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add kernel metadata to example notebooks
add kernel metadata to example notebooks

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Parallel Magics.ipynb
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MinRK
add parallel magics notebook
r7053 {
Min RK
upate exmaple notebooks to nbformat v4
r18669 "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Using Parallel Magics"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"IPython has a few magics for working with your engines.\n",
"\n",
"This assumes you have started an IPython cluster, either with the notebook interface,\n",
"or the `ipcluster/controller/engine` commands."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"from IPython import parallel\n",
"rc = parallel.Client()\n",
"dv = rc[:]\n",
"rc.ids"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Creating a Client registers the parallel magics `%px`, `%%px`, `%pxresult`, `pxconfig`, and `%autopx`. \n",
"These magics are initially associated with a DirectView always associated with all currently registered engines."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Now we can execute code remotely with `%px`:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px a=5"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px print(a)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px a"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"with dv.sync_imports():\n",
" import sys"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px from __future__ import print_function\n",
"%px print(\"ERROR\", file=sys.stderr)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You don't have to wait for results. The `%pxconfig` magic lets you change the default blocking/targets for the `%px` magics:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxconfig --noblock"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px import time\n",
"%px time.sleep(5)\n",
"%px time.time()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"But you will notice that this didn't output the result of the last command.\n",
"For this, we have `%pxresult`, which displays the output of the latest request:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxresult"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Remember, an IPython engine is IPython, so you can do magics remotely as well!"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxconfig --block\n",
"%px %matplotlib inline"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%%px\n",
"import numpy as np\n",
"import matplotlib.pyplot as plt"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"`%%px` can also be used as a cell magic, for submitting whole blocks.\n",
"This one acceps `--block` and `--noblock` flags to specify\n",
"the blocking behavior, though the default is unchanged.\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"dv.scatter('id', dv.targets, flatten=True)\n",
"dv['stride'] = len(dv)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%%px --noblock\n",
"x = np.linspace(0,np.pi,1000)\n",
"for n in range(id,12, stride):\n",
" print(n)\n",
" plt.plot(x,np.sin(n*x))\n",
"plt.title(\"Plot %i\" % id)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxresult"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"It also lets you choose some amount of the grouping of the outputs with `--group-outputs`:\n",
"\n",
"The choices are:\n",
"\n",
"* `engine` - all of an engine's output is collected together\n",
"* `type` - where stdout of each engine is grouped, etc. (the default)\n",
"* `order` - same as `type`, but individual displaypub outputs are interleaved.\n",
" That is, it will output the first plot from each engine, then the second from each,\n",
" etc."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%%px --group-outputs=engine\n",
"x = np.linspace(0,np.pi,1000)\n",
"for n in range(id+1,12, stride):\n",
" print(n)\n",
" plt.figure()\n",
" plt.plot(x,np.sin(n*x))\n",
" plt.title(\"Plot %i\" % n)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"When you specify 'order', then individual display outputs (e.g. plots) will be interleaved.\n",
"\n",
"`%pxresult` takes the same output-ordering arguments as `%%px`, \n",
"so you can view the previous result in a variety of different ways with a few sequential calls to `%pxresult`:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxresult --group-outputs=order"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Single-engine views"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"When a DirectView has a single target, the output is a bit simpler (no prefixes on stdout/err, etc.):"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"from __future__ import print_function\n",
"\n",
"def generate_output():\n",
" \"\"\"function for testing output\n",
" \n",
" publishes two outputs of each type, and returns something\n",
" \"\"\"\n",
" \n",
" import sys,os\n",
" from IPython.display import display, HTML, Math\n",
" \n",
" print(\"stdout\")\n",
" print(\"stderr\", file=sys.stderr)\n",
" \n",
" display(HTML(\"<b>HTML</b>\"))\n",
" \n",
" print(\"stdout2\")\n",
" print(\"stderr2\", file=sys.stderr)\n",
" \n",
" display(Math(r\"\\alpha=\\beta\"))\n",
" \n",
" return os.getpid()\n",
"\n",
"dv['generate_output'] = generate_output"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"You can also have more than one set of parallel magics registered at a time.\n",
"\n",
"The `View.activate()` method takes a suffix argument, which is added to `'px'`."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"e0 = rc[-1]\n",
"e0.block = True\n",
"e0.activate('0')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px0 generate_output()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%px generate_output()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"As mentioned above, we can redisplay those same results with various grouping:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxresult --group-outputs order"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%pxresult --group-outputs engine"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Parallel Exceptions"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"When you raise exceptions with the parallel exception,\n",
"the CompositeError raised locally will display your remote traceback."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%%px\n",
"from numpy.random import random\n",
"A = random((100,100,'invalid shape'))"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Remote Cell Magics"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Remember, Engines are IPython too, so the cell that is run remotely by %%px can in turn use a cell magic."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%%px\n",
"%%timeit\n",
"from numpy.random import random\n",
"from numpy.linalg import norm\n",
"A = random((100,100))\n",
"norm(A, 2)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Local Execution"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"As of IPython 1.0, you can instruct `%%px` to also execute the cell locally.\n",
"This is useful for interactive definitions,\n",
"or if you want to load a data source everywhere,\n",
"not just on the engines."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%%px --local\n",
"import os\n",
"thispid = os.getpid()\n",
"print(thispid)"
]
MinRK
add parallel magics notebook
r7053 }
Min RK
upate exmaple notebooks to nbformat v4
r18669 ],
Min RK
add kernel metadata to example notebooks
r20278 "metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.4.2"
}
},
Min RK
upate exmaple notebooks to nbformat v4
r18669 "nbformat": 4,
"nbformat_minor": 0
Min RK
add kernel metadata to example notebooks
r20278 }