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adjustments to PBS/SGE, SSH Launchers + docs update
adjustments to PBS/SGE, SSH Launchers + docs update

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r3647:b18ddd8a
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scheduler.py
580 lines | 21.6 KiB | text/x-python | PythonLexer
MinRK
general parallel code cleanup
r3556 """The Python scheduler for rich scheduling.
The Pure ZMQ scheduler does not allow routing schemes other than LRU,
nor does it check msg_id DAG dependencies. For those, a slightly slower
Python Scheduler exists.
"""
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r3548 #----------------------------------------------------------------------
# Imports
#----------------------------------------------------------------------
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use print_function
r3553 from __future__ import print_function
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r3631
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r3603 import logging
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r3631 import sys
from datetime import datetime, timedelta
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r3611 from random import randint, random
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r3603 from types import FunctionType
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r3631
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r3548 try:
import numpy
except ImportError:
numpy = None
import zmq
from zmq.eventloop import ioloop, zmqstream
# local imports
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r3603 from IPython.external.decorator import decorator
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r3604 from IPython.utils.traitlets import Instance, Dict, List, Set
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r3603
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r3642 from . import error
from .dependency import Dependency
from .entry_point import connect_logger, local_logger
from .factory import SessionFactory
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r3548
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r3603
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r3548 @decorator
def logged(f,self,*args,**kwargs):
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r3602 # print ("#--------------------")
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r3610 self.log.debug("scheduler::%s(*%s,**%s)"%(f.func_name, args, kwargs))
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r3602 # print ("#--")
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r3548 return f(self,*args, **kwargs)
#----------------------------------------------------------------------
# Chooser functions
#----------------------------------------------------------------------
def plainrandom(loads):
"""Plain random pick."""
n = len(loads)
return randint(0,n-1)
def lru(loads):
"""Always pick the front of the line.
MinRK
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r3556 The content of `loads` is ignored.
MinRK
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r3548
Assumes LRU ordering of loads, with oldest first.
"""
return 0
def twobin(loads):
"""Pick two at random, use the LRU of the two.
The content of loads is ignored.
Assumes LRU ordering of loads, with oldest first.
"""
n = len(loads)
a = randint(0,n-1)
b = randint(0,n-1)
return min(a,b)
def weighted(loads):
"""Pick two at random using inverse load as weight.
Return the less loaded of the two.
"""
# weight 0 a million times more than 1:
weights = 1./(1e-6+numpy.array(loads))
sums = weights.cumsum()
t = sums[-1]
x = random()*t
y = random()*t
idx = 0
idy = 0
while sums[idx] < x:
idx += 1
while sums[idy] < y:
idy += 1
if weights[idy] > weights[idx]:
return idy
else:
return idx
def leastload(loads):
"""Always choose the lowest load.
If the lowest load occurs more than once, the first
occurance will be used. If loads has LRU ordering, this means
the LRU of those with the lowest load is chosen.
"""
return loads.index(min(loads))
#---------------------------------------------------------------------
# Classes
#---------------------------------------------------------------------
MinRK
Improvements to dependency handling...
r3607 # store empty default dependency:
MET = Dependency([])
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r3611 class TaskScheduler(SessionFactory):
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r3551 """Python TaskScheduler object.
MinRK
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r3548
This is the simplest object that supports msg_id based
DAG dependencies. *Only* task msg_ids are checked, not
msg_ids of jobs submitted via the MUX queue.
"""
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r3604 # input arguments:
MinRK
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r3603 scheme = Instance(FunctionType, default=leastload) # function for determining the destination
client_stream = Instance(zmqstream.ZMQStream) # client-facing stream
engine_stream = Instance(zmqstream.ZMQStream) # engine-facing stream
notifier_stream = Instance(zmqstream.ZMQStream) # hub-facing sub stream
mon_stream = Instance(zmqstream.ZMQStream) # hub-facing pub stream
# internals:
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r3624 graph = Dict() # dict by msg_id of [ msg_ids that depend on key ]
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r3604 depending = Dict() # dict by msg_id of (msg_id, raw_msg, after, follow)
pending = Dict() # dict by engine_uuid of submitted tasks
completed = Dict() # dict by engine_uuid of completed tasks
MinRK
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r3607 failed = Dict() # dict by engine_uuid of failed tasks
destinations = Dict() # dict by msg_id of engine_uuids where jobs ran (reverse of completed+failed)
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r3604 clients = Dict() # dict by msg_id for who submitted the task
targets = List() # list of target IDENTs
loads = List() # list of engine loads
MinRK
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r3607 all_completed = Set() # set of all completed tasks
all_failed = Set() # set of all failed tasks
all_done = Set() # set of all finished tasks=union(completed,failed)
MinRK
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r3624 all_ids = Set() # set of all submitted task IDs
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r3604 blacklist = Dict() # dict by msg_id of locations where a job has encountered UnmetDependency
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r3611 auditor = Instance('zmq.eventloop.ioloop.PeriodicCallback')
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r3548
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r3611 def start(self):
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r3603 self.engine_stream.on_recv(self.dispatch_result, copy=False)
MinRK
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r3548 self._notification_handlers = dict(
registration_notification = self._register_engine,
unregistration_notification = self._unregister_engine
)
self.notifier_stream.on_recv(self.dispatch_notification)
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r3612 self.auditor = ioloop.PeriodicCallback(self.audit_timeouts, 2e3, self.loop) # 1 Hz
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r3611 self.auditor.start()
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r3610 self.log.info("Scheduler started...%r"%self)
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r3548
def resume_receiving(self):
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r3556 """Resume accepting jobs."""
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r3548 self.client_stream.on_recv(self.dispatch_submission, copy=False)
def stop_receiving(self):
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r3556 """Stop accepting jobs while there are no engines.
Leave them in the ZMQ queue."""
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r3548 self.client_stream.on_recv(None)
#-----------------------------------------------------------------------
# [Un]Registration Handling
#-----------------------------------------------------------------------
def dispatch_notification(self, msg):
"""dispatch register/unregister events."""
idents,msg = self.session.feed_identities(msg)
msg = self.session.unpack_message(msg)
msg_type = msg['msg_type']
handler = self._notification_handlers.get(msg_type, None)
if handler is None:
raise Exception("Unhandled message type: %s"%msg_type)
else:
try:
handler(str(msg['content']['queue']))
except KeyError:
MinRK
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r3610 self.log.error("task::Invalid notification msg: %s"%msg)
MinRK
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r3603
MinRK
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r3548 @logged
def _register_engine(self, uid):
MinRK
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r3556 """New engine with ident `uid` became available."""
MinRK
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r3548 # head of the line:
self.targets.insert(0,uid)
self.loads.insert(0,0)
# initialize sets
self.completed[uid] = set()
MinRK
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r3607 self.failed[uid] = set()
MinRK
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r3548 self.pending[uid] = {}
if len(self.targets) == 1:
self.resume_receiving()
def _unregister_engine(self, uid):
MinRK
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r3556 """Existing engine with ident `uid` became unavailable."""
MinRK
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r3548 if len(self.targets) == 1:
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r3556 # this was our only engine
MinRK
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r3548 self.stop_receiving()
MinRK
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r3556
# handle any potentially finished tasks:
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r3548 self.engine_stream.flush()
self.completed.pop(uid)
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r3607 self.failed.pop(uid)
# don't pop destinations, because it might be used later
# map(self.destinations.pop, self.completed.pop(uid))
# map(self.destinations.pop, self.failed.pop(uid))
MinRK
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r3548 idx = self.targets.index(uid)
self.targets.pop(idx)
self.loads.pop(idx)
MinRK
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r3612 # wait 5 seconds before cleaning up pending jobs, since the results might
# still be incoming
if self.pending[uid]:
dc = ioloop.DelayedCallback(lambda : self.handle_stranded_tasks(uid), 5000, self.loop)
dc.start()
MinRK
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r3548
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r3612 @logged
def handle_stranded_tasks(self, engine):
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r3556 """Deal with jobs resident in an engine that died."""
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r3612 lost = self.pending.pop(engine)
MinRK
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r3628 for msg_id, (raw_msg, targets, MET, follow, timeout) in lost.iteritems():
MinRK
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r3612 self.all_failed.add(msg_id)
self.all_done.add(msg_id)
idents,msg = self.session.feed_identities(raw_msg, copy=False)
msg = self.session.unpack_message(msg, copy=False, content=False)
parent = msg['header']
idents = [idents[0],engine]+idents[1:]
print (idents)
try:
raise error.EngineError("Engine %r died while running task %r"%(engine, msg_id))
except:
MinRK
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r3644 content = error.wrap_exception()
MinRK
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r3612 msg = self.session.send(self.client_stream, 'apply_reply', content,
parent=parent, ident=idents)
self.session.send(self.mon_stream, msg, ident=['outtask']+idents)
MinRK
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r3624 self.update_graph(msg_id)
MinRK
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r3548
#-----------------------------------------------------------------------
# Job Submission
#-----------------------------------------------------------------------
@logged
def dispatch_submission(self, raw_msg):
MinRK
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r3556 """Dispatch job submission to appropriate handlers."""
MinRK
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r3548 # ensure targets up to date:
self.notifier_stream.flush()
try:
idents, msg = self.session.feed_identities(raw_msg, copy=False)
MinRK
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r3624 msg = self.session.unpack_message(msg, content=False, copy=False)
except:
self.log.error("task::Invaid task: %s"%raw_msg, exc_info=True)
MinRK
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r3548 return
MinRK
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r3563 # send to monitor
self.mon_stream.send_multipart(['intask']+raw_msg, copy=False)
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r3548 header = msg['header']
msg_id = header['msg_id']
MinRK
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r3624 self.all_ids.add(msg_id)
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r3556
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r3625 # targets
targets = set(header.get('targets', []))
MinRK
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r3556 # time dependencies
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r3548 after = Dependency(header.get('after', []))
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r3624 if after.all:
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r3607 after.difference_update(self.all_completed)
if not after.success_only:
after.difference_update(self.all_failed)
if after.check(self.all_completed, self.all_failed):
MinRK
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r3556 # recast as empty set, if `after` already met,
# to prevent unnecessary set comparisons
MinRK
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r3607 after = MET
MinRK
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r3548
MinRK
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r3556 # location dependencies
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r3548 follow = Dependency(header.get('follow', []))
MinRK
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r3624
MinRK
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r3625 # turn timeouts into datetime objects:
timeout = header.get('timeout', None)
if timeout:
timeout = datetime.now() + timedelta(0,timeout,0)
args = [raw_msg, targets, after, follow, timeout]
# validate and reduce dependencies:
MinRK
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r3624 for dep in after,follow:
# check valid:
if msg_id in dep or dep.difference(self.all_ids):
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r3625 self.depending[msg_id] = args
MinRK
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r3624 return self.fail_unreachable(msg_id, error.InvalidDependency)
# check if unreachable:
if dep.unreachable(self.all_failed):
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r3625 self.depending[msg_id] = args
MinRK
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r3624 return self.fail_unreachable(msg_id)
MinRK
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r3607
if after.check(self.all_completed, self.all_failed):
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r3548 # time deps already met, try to run
MinRK
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r3625 if not self.maybe_run(msg_id, *args):
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r3548 # can't run yet
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r3625 self.save_unmet(msg_id, *args)
MinRK
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r3548 else:
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r3625 self.save_unmet(msg_id, *args)
MinRK
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r3556
MinRK
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r3622 # @logged
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r3611 def audit_timeouts(self):
"""Audit all waiting tasks for expired timeouts."""
now = datetime.now()
for msg_id in self.depending.keys():
# must recheck, in case one failure cascaded to another:
if msg_id in self.depending:
MinRK
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r3625 raw,after,targets,follow,timeout = self.depending[msg_id]
MinRK
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r3611 if timeout and timeout < now:
self.fail_unreachable(msg_id, timeout=True)
@logged
MinRK
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r3624 def fail_unreachable(self, msg_id, why=error.ImpossibleDependency):
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r3625 """a task has become unreachable, send a reply with an ImpossibleDependency
error."""
MinRK
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r3607 if msg_id not in self.depending:
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r3610 self.log.error("msg %r already failed!"%msg_id)
MinRK
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r3607 return
MinRK
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r3625 raw_msg,targets,after,follow,timeout = self.depending.pop(msg_id)
MinRK
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r3607 for mid in follow.union(after):
MinRK
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r3624 if mid in self.graph:
self.graph[mid].remove(msg_id)
MinRK
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r3607
MinRK
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r3611 # FIXME: unpacking a message I've already unpacked, but didn't save:
MinRK
Improvements to dependency handling...
r3607 idents,msg = self.session.feed_identities(raw_msg, copy=False)
msg = self.session.unpack_message(msg, copy=False, content=False)
header = msg['header']
try:
MinRK
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r3624 raise why()
MinRK
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r3607 except:
MinRK
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r3644 content = error.wrap_exception()
MinRK
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r3607
self.all_done.add(msg_id)
self.all_failed.add(msg_id)
msg = self.session.send(self.client_stream, 'apply_reply', content,
parent=header, ident=idents)
self.session.send(self.mon_stream, msg, ident=['outtask']+idents)
MinRK
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r3624 self.update_graph(msg_id, success=False)
MinRK
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r3607
@logged
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r3625 def maybe_run(self, msg_id, raw_msg, targets, after, follow, timeout):
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r3548 """check location dependencies, and run if they are met."""
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r3625 blacklist = self.blacklist.setdefault(msg_id, set())
if follow or targets or blacklist:
# we need a can_run filter
MinRK
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r3548 def can_run(idx):
target = self.targets[idx]
MinRK
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r3625 # check targets
if targets and target not in targets:
return False
# check blacklist
if target in blacklist:
return False
# check follow
return follow.check(self.completed[target], self.failed[target])
MinRK
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r3548
indices = filter(can_run, range(len(self.targets)))
if not indices:
MinRK
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r3625 # couldn't run
MinRK
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r3624 if follow.all:
MinRK
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r3625 # check follow for impossibility
MinRK
Improvements to dependency handling...
r3607 dests = set()
relevant = self.all_completed if follow.success_only else self.all_done
for m in follow.intersection(relevant):
dests.add(self.destinations[m])
if len(dests) > 1:
self.fail_unreachable(msg_id)
MinRK
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r3625 return False
if targets:
# check blacklist+targets for impossibility
targets.difference_update(blacklist)
if not targets or not targets.intersection(self.targets):
self.fail_unreachable(msg_id)
return False
MinRK
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r3548 return False
else:
indices = None
MinRK
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r3625 self.submit_task(msg_id, raw_msg, targets, follow, timeout, indices)
MinRK
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r3548 return True
@logged
MinRK
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r3625 def save_unmet(self, msg_id, raw_msg, targets, after, follow, timeout):
MinRK
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r3548 """Save a message for later submission when its dependencies are met."""
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r3625 self.depending[msg_id] = [raw_msg,targets,after,follow,timeout]
MinRK
Improvements to dependency handling...
r3607 # track the ids in follow or after, but not those already finished
MinRK
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r3548 for dep_id in after.union(follow).difference(self.all_done):
MinRK
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r3624 if dep_id not in self.graph:
self.graph[dep_id] = set()
self.graph[dep_id].add(msg_id)
MinRK
scheduler progress
r3551
MinRK
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r3548 @logged
MinRK
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r3625 def submit_task(self, msg_id, raw_msg, targets, follow, timeout, indices=None):
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r3556 """Submit a task to any of a subset of our targets."""
MinRK
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r3548 if indices:
loads = [self.loads[i] for i in indices]
else:
loads = self.loads
idx = self.scheme(loads)
if indices:
idx = indices[idx]
target = self.targets[idx]
MinRK
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r3563 # print (target, map(str, msg[:3]))
MinRK
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r3551 self.engine_stream.send(target, flags=zmq.SNDMORE, copy=False)
MinRK
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r3612 self.engine_stream.send_multipart(raw_msg, copy=False)
MinRK
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r3548 self.add_job(idx)
MinRK
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r3625 self.pending[target][msg_id] = (raw_msg, targets, MET, follow, timeout)
MinRK
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r3556 content = dict(msg_id=msg_id, engine_id=target)
MinRK
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r3603 self.session.send(self.mon_stream, 'task_destination', content=content,
ident=['tracktask',self.session.session])
MinRK
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r3548
#-----------------------------------------------------------------------
# Result Handling
#-----------------------------------------------------------------------
@logged
def dispatch_result(self, raw_msg):
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r3625 """dispatch method for result replies"""
MinRK
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r3548 try:
idents,msg = self.session.feed_identities(raw_msg, copy=False)
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r3624 msg = self.session.unpack_message(msg, content=False, copy=False)
except:
self.log.error("task::Invaid result: %s"%raw_msg, exc_info=True)
MinRK
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r3548 return
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r3624
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r3548 header = msg['header']
if header.get('dependencies_met', True):
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r3607 success = (header['status'] == 'ok')
self.handle_result(idents, msg['parent_header'], raw_msg, success)
# send to Hub monitor
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r3548 self.mon_stream.send_multipart(['outtask']+raw_msg, copy=False)
else:
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r3551 self.handle_unmet_dependency(idents, msg['parent_header'])
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r3548
@logged
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r3607 def handle_result(self, idents, parent, raw_msg, success=True):
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r3625 """handle a real task result, either success or failure"""
MinRK
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r3548 # first, relay result to client
engine = idents[0]
client = idents[1]
# swap_ids for XREP-XREP mirror
raw_msg[:2] = [client,engine]
MinRK
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r3563 # print (map(str, raw_msg[:4]))
MinRK
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r3548 self.client_stream.send_multipart(raw_msg, copy=False)
# now, update our data structures
msg_id = parent['msg_id']
MinRK
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r3612 self.blacklist.pop(msg_id, None)
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r3548 self.pending[engine].pop(msg_id)
MinRK
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r3607 if success:
self.completed[engine].add(msg_id)
self.all_completed.add(msg_id)
else:
self.failed[engine].add(msg_id)
self.all_failed.add(msg_id)
MinRK
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r3565 self.all_done.add(msg_id)
MinRK
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r3607 self.destinations[msg_id] = engine
MinRK
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r3548
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r3624 self.update_graph(msg_id, success)
MinRK
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r3548
@logged
def handle_unmet_dependency(self, idents, parent):
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r3625 """handle an unmet dependency"""
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r3548 engine = idents[0]
msg_id = parent['msg_id']
MinRK
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r3625
MinRK
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r3548 if msg_id not in self.blacklist:
self.blacklist[msg_id] = set()
self.blacklist[msg_id].add(engine)
MinRK
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r3625
args = self.pending[engine].pop(msg_id)
raw,targets,after,follow,timeout = args
if self.blacklist[msg_id] == targets:
self.depending[msg_id] = args
return self.fail_unreachable(msg_id)
elif not self.maybe_run(msg_id, *args):
MinRK
added dependencies & Python scheduler
r3548 # resubmit failed, put it back in our dependency tree
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allow load-balancing across subsets of engines
r3625 self.save_unmet(msg_id, *args)
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Improvements to dependency handling...
r3607
MinRK
added dependencies & Python scheduler
r3548 @logged
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dependency tweaks + dependency/scheduler docs
r3624 def update_graph(self, dep_id, success=True):
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added dependencies & Python scheduler
r3548 """dep_id just finished. Update our dependency
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allow load-balancing across subsets of engines
r3625 graph and submit any jobs that just became runable."""
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Improvements to dependency handling...
r3607 # print ("\n\n***********")
# pprint (dep_id)
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dependency tweaks + dependency/scheduler docs
r3624 # pprint (self.graph)
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Improvements to dependency handling...
r3607 # pprint (self.depending)
# pprint (self.all_completed)
# pprint (self.all_failed)
# print ("\n\n***********\n\n")
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dependency tweaks + dependency/scheduler docs
r3624 if dep_id not in self.graph:
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added dependencies & Python scheduler
r3548 return
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dependency tweaks + dependency/scheduler docs
r3624 jobs = self.graph.pop(dep_id)
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Improvements to dependency handling...
r3607
for msg_id in jobs:
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allow load-balancing across subsets of engines
r3625 raw_msg, targets, after, follow, timeout = self.depending[msg_id]
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Improvements to dependency handling...
r3607 # if dep_id in after:
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dependency tweaks + dependency/scheduler docs
r3624 # if after.all and (success or not after.success_only):
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Improvements to dependency handling...
r3607 # after.remove(dep_id)
if after.unreachable(self.all_failed) or follow.unreachable(self.all_failed):
self.fail_unreachable(msg_id)
elif after.check(self.all_completed, self.all_failed): # time deps met, maybe run
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allow load-balancing across subsets of engines
r3625 if self.maybe_run(msg_id, raw_msg, targets, MET, follow, timeout):
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Improvements to dependency handling...
r3607
self.depending.pop(msg_id)
for mid in follow.union(after):
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dependency tweaks + dependency/scheduler docs
r3624 if mid in self.graph:
self.graph[mid].remove(msg_id)
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added dependencies & Python scheduler
r3548
#----------------------------------------------------------------------
# methods to be overridden by subclasses
#----------------------------------------------------------------------
def add_job(self, idx):
"""Called after self.targets[idx] just got the job with header.
Override with subclasses. The default ordering is simple LRU.
The default loads are the number of outstanding jobs."""
self.loads[idx] += 1
for lis in (self.targets, self.loads):
lis.append(lis.pop(idx))
def finish_job(self, idx):
"""Called after self.targets[idx] just finished a job.
Override with subclasses."""
self.loads[idx] -= 1
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dependency tweaks + dependency/scheduler docs
r3624 def launch_scheduler(in_addr, out_addr, mon_addr, not_addr, config=None,logname='ZMQ',
log_addr=None, loglevel=logging.DEBUG, scheme='lru'):
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added dependencies & Python scheduler
r3548 from zmq.eventloop import ioloop
from zmq.eventloop.zmqstream import ZMQStream
ctx = zmq.Context()
loop = ioloop.IOLoop()
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newparallel tweaks, fixes...
r3622 print (in_addr, out_addr, mon_addr, not_addr)
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added dependencies & Python scheduler
r3548 ins = ZMQStream(ctx.socket(zmq.XREP),loop)
ins.bind(in_addr)
outs = ZMQStream(ctx.socket(zmq.XREP),loop)
outs.bind(out_addr)
mons = ZMQStream(ctx.socket(zmq.PUB),loop)
mons.connect(mon_addr)
nots = ZMQStream(ctx.socket(zmq.SUB),loop)
nots.setsockopt(zmq.SUBSCRIBE, '')
nots.connect(not_addr)
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Refactor newparallel to use Config system...
r3604 scheme = globals().get(scheme, None)
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improved logging + Hub,Engine,Scheduler are Configurable
r3603 # setup logging
if log_addr:
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rework logging connections
r3610 connect_logger(logname, ctx, log_addr, root="scheduler", loglevel=loglevel)
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improved logging + Hub,Engine,Scheduler are Configurable
r3603 else:
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rework logging connections
r3610 local_logger(logname, loglevel)
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improved logging + Hub,Engine,Scheduler are Configurable
r3603
scheduler = TaskScheduler(client_stream=ins, engine_stream=outs,
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add timeout for unmet dependencies in task scheduler
r3611 mon_stream=mons, notifier_stream=nots,
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newparallel tweaks, fixes...
r3622 scheme=scheme, loop=loop, logname=logname,
config=config)
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add timeout for unmet dependencies in task scheduler
r3611 scheduler.start()
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Refactor newparallel to use Config system...
r3604 try:
loop.start()
except KeyboardInterrupt:
print ("interrupted, exiting...", file=sys.__stderr__)
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added dependencies & Python scheduler
r3548