Define flags in application that's going to use them.

IPython/frontend/html/notebook/notebookapp.py

@@ -1,380 +1,383
 """A tornado based IPython notebook server.
 
 Authors:
 
 * Brian Granger
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 # stdlib
 import errno
 import logging
 import os
 import signal
 import socket
 import sys
 import threading
 import webbrowser
 
 # Third party
 import zmq
 
 # Install the pyzmq ioloop. This has to be done before anything else from
 # tornado is imported.
 from zmq.eventloop import ioloop
 # FIXME: ioloop.install is new in pyzmq-2.1.7, so remove this conditional
 # when pyzmq dependency is updated beyond that.
 if hasattr(ioloop, 'install'):
     ioloop.install()
 else:
     import tornado.ioloop
     tornado.ioloop.IOLoop = ioloop.IOLoop
 
 from tornado import httpserver
 from tornado import web
 
 # Our own libraries
 from .kernelmanager import MappingKernelManager
 from .handlers import (LoginHandler, LogoutHandler,
     ProjectDashboardHandler, NewHandler, NamedNotebookHandler,
     MainKernelHandler, KernelHandler, KernelActionHandler, IOPubHandler,
     ShellHandler, NotebookRootHandler, NotebookHandler, RSTHandler
 )
-from .notebookmanager import NotebookManager, manager_flags
+from .notebookmanager import NotebookManager
 
-from IPython.config.application import catch_config_error
+from IPython.config.application import catch_config_error, boolean_flag
 from IPython.core.application import BaseIPythonApplication
 from IPython.core.profiledir import ProfileDir
 from IPython.lib.kernel import swallow_argv
 from IPython.zmq.session import Session, default_secure
 from IPython.zmq.zmqshell import ZMQInteractiveShell
 from IPython.zmq.ipkernel import (
     flags as ipkernel_flags,
     aliases as ipkernel_aliases,
     IPKernelApp
 )
 from IPython.utils.traitlets import Dict, Unicode, Integer, List, Enum, Bool
 
 #-----------------------------------------------------------------------------
 # Module globals
 #-----------------------------------------------------------------------------
 
 _kernel_id_regex = r"(?P<kernel_id>\w+-\w+-\w+-\w+-\w+)"
 _kernel_action_regex = r"(?P<action>restart|interrupt)"
 _notebook_id_regex = r"(?P<notebook_id>\w+-\w+-\w+-\w+-\w+)"
 
 LOCALHOST = '127.0.0.1'
 
 _examples = """
 ipython notebook                       # start the notebook
 ipython notebook --profile=sympy       # use the sympy profile
 ipython notebook --pylab=inline        # pylab in inline plotting mode
 ipython notebook --certfile=mycert.pem # use SSL/TLS certificate
 ipython notebook --port=5555 --ip=*    # Listen on port 5555, all interfaces
 """
 
 #-----------------------------------------------------------------------------
 # The Tornado web application
 #-----------------------------------------------------------------------------
 
 class NotebookWebApplication(web.Application):
 
     def __init__(self, ipython_app, kernel_manager, notebook_manager, log, settings_overrides):
         handlers = [
             (r"/", ProjectDashboardHandler),
             (r"/login", LoginHandler),
             (r"/logout", LogoutHandler),
             (r"/new", NewHandler),
             (r"/%s" % _notebook_id_regex, NamedNotebookHandler),
             (r"/kernels", MainKernelHandler),
             (r"/kernels/%s" % _kernel_id_regex, KernelHandler),
             (r"/kernels/%s/%s" % (_kernel_id_regex, _kernel_action_regex), KernelActionHandler),
             (r"/kernels/%s/iopub" % _kernel_id_regex, IOPubHandler),
             (r"/kernels/%s/shell" % _kernel_id_regex, ShellHandler),
             (r"/notebooks", NotebookRootHandler),
             (r"/notebooks/%s" % _notebook_id_regex, NotebookHandler),
             (r"/rstservice/render", RSTHandler)
         ]
         settings = dict(
             template_path=os.path.join(os.path.dirname(__file__), "templates"),
             static_path=os.path.join(os.path.dirname(__file__), "static"),
             cookie_secret=os.urandom(1024),
             login_url="/login",
         )
 
         # allow custom overrides for the tornado web app.
         settings.update(settings_overrides)
 
         super(NotebookWebApplication, self).__init__(handlers, **settings)
 
         self.kernel_manager = kernel_manager
         self.log = log
         self.notebook_manager = notebook_manager
         self.ipython_app = ipython_app
         self.read_only = self.ipython_app.read_only
 
 
 #-----------------------------------------------------------------------------
 # Aliases and Flags
 #-----------------------------------------------------------------------------
 
 flags = dict(ipkernel_flags)
 flags['no-browser']=(
     {'NotebookApp' : {'open_browser' : False}},
     "Don't open the notebook in a browser after startup."
 )
 flags['no-mathjax']=(
     {'NotebookApp' : {'enable_mathjax' : False}},
     """Disable MathJax
     
     MathJax is the javascript library IPython uses to render math/LaTeX. It is
     very large, so you may want to disable it if you have a slow internet
     connection, or for offline use of the notebook.
     
     When disabled, equations etc. will appear as their untransformed TeX source.
     """
 )
 flags['read-only'] = (
     {'NotebookApp' : {'read_only' : True}},
     """Allow read-only access to notebooks.
     
     When using a password to protect the notebook server, this flag
     allows unauthenticated clients to view the notebook list, and
     individual notebooks, but not edit them, start kernels, or run
     code.
     
     If no password is set, the server will be entirely read-only.
     """
 )
 
-flags.update(manager_flags)
+# Add notebook manager flags
+flags.update(boolean_flag('script', 'NotebookManager.save_script',
+               'Auto-save a .py script everytime the .ipynb notebook is saved',
+               'Do not auto-save .py scripts for every notebook'))
 
 # the flags that are specific to the frontend
 # these must be scrubbed before being passed to the kernel,
 # or it will raise an error on unrecognized flags
-notebook_flags = ['no-browser', 'no-mathjax', 'read-only', 'script']
+notebook_flags = ['no-browser', 'no-mathjax', 'read-only', 'script', 'no-script']
 
 aliases = dict(ipkernel_aliases)
 
 aliases.update({
     'ip': 'NotebookApp.ip',
     'port': 'NotebookApp.port',
     'keyfile': 'NotebookApp.keyfile',
     'certfile': 'NotebookApp.certfile',
     'notebook-dir': 'NotebookManager.notebook_dir',
 })
 
 # remove ipkernel flags that are singletons, and don't make sense in
 # multi-kernel evironment:
 aliases.pop('f', None)
 
 notebook_aliases = [u'port', u'ip', u'keyfile', u'certfile',
                     u'notebook-dir']
 
 #-----------------------------------------------------------------------------
 # NotebookApp
 #-----------------------------------------------------------------------------
 
 class NotebookApp(BaseIPythonApplication):
 
     name = 'ipython-notebook'
     default_config_file_name='ipython_notebook_config.py'
     
     description = """
         The IPython HTML Notebook.
         
         This launches a Tornado based HTML Notebook Server that serves up an
         HTML5/Javascript Notebook client.
     """
     examples = _examples
     
     classes = [IPKernelApp, ZMQInteractiveShell, ProfileDir, Session,
                MappingKernelManager, NotebookManager]
     flags = Dict(flags)
     aliases = Dict(aliases)
 
     kernel_argv = List(Unicode)
 
     log_level = Enum((0,10,20,30,40,50,'DEBUG','INFO','WARN','ERROR','CRITICAL'),
                     default_value=logging.INFO,
                     config=True,
                     help="Set the log level by value or name.")
 
     # Network related information.
 
     ip = Unicode(LOCALHOST, config=True,
         help="The IP address the notebook server will listen on."
     )
 
     def _ip_changed(self, name, old, new):
         if new == u'*': self.ip = u''
 
     port = Integer(8888, config=True,
         help="The port the notebook server will listen on."
     )
 
     certfile = Unicode(u'', config=True, 
         help="""The full path to an SSL/TLS certificate file."""
     )
     
     keyfile = Unicode(u'', config=True, 
         help="""The full path to a private key file for usage with SSL/TLS."""
     )
 
     password = Unicode(u'', config=True,
                       help="""Hashed password to use for web authentication.
 
                       To generate, type in a python/IPython shell:
 
                         from IPython.lib import passwd; passwd()
 
                       The string should be of the form type:salt:hashed-password.
                       """
     )
     
     open_browser = Bool(True, config=True,
                         help="Whether to open in a browser after starting.")
     
     read_only = Bool(False, config=True,
         help="Whether to prevent editing/execution of notebooks."
     )
     
     webapp_settings = Dict(config=True,
             help="Supply overrides for the tornado.web.Application that the "
                  "IPython notebook uses.")
     
     enable_mathjax = Bool(True, config=True,
         help="""Whether to enable MathJax for typesetting math/TeX
 
         MathJax is the javascript library IPython uses to render math/LaTeX. It is
         very large, so you may want to disable it if you have a slow internet
         connection, or for offline use of the notebook.
 
         When disabled, equations etc. will appear as their untransformed TeX source.
         """
     )
     def _enable_mathjax_changed(self, name, old, new):
         """set mathjax url to empty if mathjax is disabled"""
         if not new:
             self.mathjax_url = u''
     
     mathjax_url = Unicode("", config=True,
         help="""The url for MathJax.js."""
     )
     def _mathjax_url_default(self):
         if not self.enable_mathjax:
             return u''
         static_path = self.webapp_settings.get("static_path", os.path.join(os.path.dirname(__file__), "static"))
         if os.path.exists(os.path.join(static_path, 'mathjax', "MathJax.js")):
             self.log.info("Using local MathJax")
             return u"static/mathjax/MathJax.js"
         else:
             self.log.info("Using MathJax from CDN")
             return u"http://cdn.mathjax.org/mathjax/latest/MathJax.js"
     
     def _mathjax_url_changed(self, name, old, new):
         if new and not self.enable_mathjax:
             # enable_mathjax=False overrides mathjax_url
             self.mathjax_url = u''
         else:
             self.log.info("Using MathJax: %s", new)
 
     def parse_command_line(self, argv=None):
         super(NotebookApp, self).parse_command_line(argv)
         if argv is None:
             argv = sys.argv[1:]
 
         # Scrub frontend-specific flags
         self.kernel_argv = swallow_argv(argv, notebook_aliases, notebook_flags)
         # Kernel should inherit default config file from frontend
         self.kernel_argv.append("--KernelApp.parent_appname='%s'"%self.name)
 
     def init_configurables(self):
         # Don't let Qt or ZMQ swallow KeyboardInterupts.
         signal.signal(signal.SIGINT, signal.SIG_DFL)
 
         # force Session default to be secure
         default_secure(self.config)
         # Create a KernelManager and start a kernel.
         self.kernel_manager = MappingKernelManager(
             config=self.config, log=self.log, kernel_argv=self.kernel_argv,
             connection_dir = self.profile_dir.security_dir,
         )
         self.notebook_manager = NotebookManager(config=self.config, log=self.log)
         self.notebook_manager.list_notebooks()
 
     def init_logging(self):
         super(NotebookApp, self).init_logging()
         # This prevents double log messages because tornado use a root logger that
         # self.log is a child of. The logging module dipatches log messages to a log
         # and all of its ancenstors until propagate is set to False.
         self.log.propagate = False
 
     @catch_config_error
     def initialize(self, argv=None):
         super(NotebookApp, self).initialize(argv)
         self.init_configurables()
         self.web_app = NotebookWebApplication(
             self, self.kernel_manager, self.notebook_manager, self.log,
             self.webapp_settings
         )
         if self.certfile:
             ssl_options = dict(certfile=self.certfile)
             if self.keyfile:
                 ssl_options['keyfile'] = self.keyfile
         else:
             ssl_options = None
         self.web_app.password = self.password
         self.http_server = httpserver.HTTPServer(self.web_app, ssl_options=ssl_options)
         if ssl_options is None and not self.ip:
             self.log.critical('WARNING: the notebook server is listening on all IP addresses '
                               'but not using any encryption or authentication. This is highly '
                               'insecure and not recommended.')
 
         # Try random ports centered around the default.
         from random import randint
         n = 50  # Max number of attempts, keep reasonably large.
         for port in range(self.port, self.port+5) + [self.port + randint(-2*n, 2*n) for i in range(n-5)]:
             try:
                 self.http_server.listen(port, self.ip)
             except socket.error, e:
                 if e.errno != errno.EADDRINUSE:
                     raise
                 self.log.info('The port %i is already in use, trying another random port.' % port)
             else:
                 self.port = port
                 break
 
     def start(self):
         ip = self.ip if self.ip else '[all ip addresses on your system]'
         proto = 'https' if self.certfile else 'http'
         self.log.info("The IPython Notebook is running at: %s://%s:%i" % (proto,
                                                                           ip,
                                                                           self.port))
         if self.open_browser:
             ip = self.ip or '127.0.0.1'
             b = lambda : webbrowser.open("%s://%s:%i" % (proto, ip, self.port),
                                          new=2)
             threading.Thread(target=b).start()
 
         ioloop.IOLoop.instance().start()
 
 #-----------------------------------------------------------------------------
 # Main entry point
 #-----------------------------------------------------------------------------
 
 def launch_new_instance():
     app = NotebookApp()
     app.initialize()
     app.start()
 

IPython/frontend/html/notebook/notebookmanager.py

@@ -1,264 +1,255
 """A notebook manager that uses the local file system for storage.
 
 Authors:
 
 * Brian Granger
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 import datetime
 import os
 import uuid
 import glob
 
 from tornado import web
 
-from IPython.config.application import boolean_flag
 from IPython.config.configurable import LoggingConfigurable
 from IPython.nbformat import current
 from IPython.utils.traitlets import Unicode, List, Dict, Bool
 
 #-----------------------------------------------------------------------------
-# Aliases and Flags
-#-----------------------------------------------------------------------------
-
-manager_flags =boolean_flag('script', 'NotebookManager.save_script',
-               'Auto-save a .py script everytime the .ipynb notebook is saved',
-               'Do not auto-save .py scripts for every notebook')
-
-#-----------------------------------------------------------------------------
 # Classes
 #-----------------------------------------------------------------------------
 
 class NotebookManager(LoggingConfigurable):
 
     notebook_dir = Unicode(os.getcwd(), config=True, help="""
         The directory to use for notebooks.
     """)
     
     save_script = Bool(False, config=True,
         help="""Automatically create a Python script when saving the notebook.
         
         For easier use of import, %run and %loadpy across notebooks, a
         <notebook-name>.py script will be created next to any
         <notebook-name>.ipynb on each save.  This can also be set with the
         short `--script` flag.
         """
     )
     
     filename_ext = Unicode(u'.ipynb')
     allowed_formats = List([u'json',u'py'])
 
     # Map notebook_ids to notebook names
     mapping = Dict()
     # Map notebook names to notebook_ids
     rev_mapping = Dict()
 
     def list_notebooks(self):
         """List all notebooks in the notebook dir.
 
         This returns a list of dicts of the form::
 
             dict(notebook_id=notebook,name=name)
         """
         names = glob.glob(os.path.join(self.notebook_dir,
                                        '*' + self.filename_ext))
         names = [os.path.splitext(os.path.basename(name))[0]
                  for name in names]
 
         data = []
         for name in names:
             if name not in self.rev_mapping:
                 notebook_id = self.new_notebook_id(name)
             else:
                 notebook_id = self.rev_mapping[name]
             data.append(dict(notebook_id=notebook_id,name=name))
         data = sorted(data, key=lambda item: item['name'])
         return data
 
     def new_notebook_id(self, name):
         """Generate a new notebook_id for a name and store its mappings."""
         # TODO: the following will give stable urls for notebooks, but unless
         # the notebooks are immediately redirected to their new urls when their
         # filemname changes, nasty inconsistencies result.  So for now it's
         # disabled and instead we use a random uuid4() call.  But we leave the
         # logic here so that we can later reactivate it, whhen the necessary
         # url redirection code is written.
         #notebook_id = unicode(uuid.uuid5(uuid.NAMESPACE_URL,
         #                 'file://'+self.get_path_by_name(name).encode('utf-8')))
         
         notebook_id = unicode(uuid.uuid4())
         
         self.mapping[notebook_id] = name
         self.rev_mapping[name] = notebook_id
         return notebook_id
 
     def delete_notebook_id(self, notebook_id):
         """Delete a notebook's id only. This doesn't delete the actual notebook."""
         name = self.mapping[notebook_id]
         del self.mapping[notebook_id]
         del self.rev_mapping[name]
 
     def notebook_exists(self, notebook_id):
         """Does a notebook exist?"""
         if notebook_id not in self.mapping:
             return False
         path = self.get_path_by_name(self.mapping[notebook_id])
         return os.path.isfile(path)
 
     def find_path(self, notebook_id):
         """Return a full path to a notebook given its notebook_id."""
         try:
             name = self.mapping[notebook_id]
         except KeyError:
             raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
         return self.get_path_by_name(name)
 
     def get_path_by_name(self, name):
         """Return a full path to a notebook given its name."""
         filename = name + self.filename_ext
         path = os.path.join(self.notebook_dir, filename)
         return path       
 
     def get_notebook(self, notebook_id, format=u'json'):
         """Get the representation of a notebook in format by notebook_id."""
         format = unicode(format)
         if format not in self.allowed_formats:
             raise web.HTTPError(415, u'Invalid notebook format: %s' % format)
         last_modified, nb = self.get_notebook_object(notebook_id)
         kwargs = {}
         if format == 'json':
             # don't split lines for sending over the wire, because it
             # should match the Python in-memory format.
             kwargs['split_lines'] = False
         data = current.writes(nb, format, **kwargs)
         name = nb.get('name','notebook')
         return last_modified, name, data
 
     def get_notebook_object(self, notebook_id):
         """Get the NotebookNode representation of a notebook by notebook_id."""
         path = self.find_path(notebook_id)
         if not os.path.isfile(path):
             raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
         info = os.stat(path)
         last_modified = datetime.datetime.utcfromtimestamp(info.st_mtime)
         with open(path,'r') as f:
             s = f.read()
             try:
                 # v1 and v2 and json in the .ipynb files.
                 nb = current.reads(s, u'json')
             except:
                 raise web.HTTPError(500, u'Unreadable JSON notebook.')
         if 'name' not in nb:
             nb.name = os.path.split(path)[-1].split(u'.')[0]
         return last_modified, nb
 
     def save_new_notebook(self, data, name=None, format=u'json'):
         """Save a new notebook and return its notebook_id.
 
         If a name is passed in, it overrides any values in the notebook data
         and the value in the data is updated to use that value.
         """
         if format not in self.allowed_formats:
             raise web.HTTPError(415, u'Invalid notebook format: %s' % format)
 
         try:
             nb = current.reads(data.decode('utf-8'), format)
         except:
             raise web.HTTPError(400, u'Invalid JSON data')
 
         if name is None:
             try:
                 name = nb.metadata.name
             except AttributeError:
                 raise web.HTTPError(400, u'Missing notebook name')
         nb.metadata.name = name
 
         notebook_id = self.new_notebook_id(name)
         self.save_notebook_object(notebook_id, nb)
         return notebook_id
 
     def save_notebook(self, notebook_id, data, name=None, format=u'json'):
         """Save an existing notebook by notebook_id."""
         if format not in self.allowed_formats:
             raise web.HTTPError(415, u'Invalid notebook format: %s' % format)
 
         try:
             nb = current.reads(data.decode('utf-8'), format)
         except:
             raise web.HTTPError(400, u'Invalid JSON data')
 
         if name is not None:
             nb.metadata.name = name
         self.save_notebook_object(notebook_id, nb)
 
     def save_notebook_object(self, notebook_id, nb):
         """Save an existing notebook object by notebook_id."""
         if notebook_id not in self.mapping:
             raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
         old_name = self.mapping[notebook_id]
         try:
             new_name = nb.metadata.name
         except AttributeError:
             raise web.HTTPError(400, u'Missing notebook name')
         path = self.get_path_by_name(new_name)
         try:
             with open(path,'w') as f:
                 current.write(nb, f, u'json')
         except Exception as e:
             raise web.HTTPError(400, u'Unexpected error while saving notebook: %s' % e)
         # save .py script as well
         if self.save_script:
             pypath = os.path.splitext(path)[0] + '.py'
             try:
                 with open(pypath,'w') as f:
                     current.write(nb, f, u'py')
             except Exception as e:
                 raise web.HTTPError(400, u'Unexpected error while saving notebook as script: %s' % e)
         
         if old_name != new_name:
             old_path = self.get_path_by_name(old_name)
             if os.path.isfile(old_path):
                 os.unlink(old_path)
             if self.save_script:
                 old_pypath = os.path.splitext(old_path)[0] + '.py'
                 if os.path.isfile(old_pypath):
                     os.unlink(old_pypath)
             self.mapping[notebook_id] = new_name
             self.rev_mapping[new_name] = notebook_id
 
     def delete_notebook(self, notebook_id):
         """Delete notebook by notebook_id."""
         path = self.find_path(notebook_id)
         if not os.path.isfile(path):
             raise web.HTTPError(404, u'Notebook does not exist: %s' % notebook_id)
         os.unlink(path)
         self.delete_notebook_id(notebook_id)
 
     def new_notebook(self):
         """Create a new notebook and returns its notebook_id."""
         i = 0
         while True:
             name = u'Untitled%i' % i
             path = self.get_path_by_name(name)
             if not os.path.isfile(path):
                 break
             else:
                 i = i+1
         notebook_id = self.new_notebook_id(name)
         metadata = current.new_metadata(name=name)
         nb = current.new_notebook(metadata=metadata)
         with open(path,'w') as f:
             current.write(nb, f, u'json')
         return notebook_id