support notebooks in %run

Simple enough - just generalized safe_exec_ipy a bit to support a sequence of cells rather than just one cell (the .ipy behavior).

I think we have an issue open for this, but I can't seem to find it.

IPython/core/interactiveshell.py

@@ -2536,13 +2536,13 b' class InteractiveShell(SingletonConfigurable):'
                 self.showtraceback()
 
     def safe_execfile_ipy(self, fname):
-        """Like safe_execfile, but for .ipy files with IPython syntax.
+        """Like safe_execfile, but for .ipy or .ipynb files with IPython syntax.
 
         Parameters
         ----------
         fname : str
             The name of the file to execute.  The filename must have a
-            .ipy extension.
+            .ipy or .ipynb extension.
         """
         fname = os.path.abspath(os.path.expanduser(fname))
 
@@ -2559,14 +2559,28 b' class InteractiveShell(SingletonConfigurable):'
         # Python inserts the script's directory into sys.path
         dname = os.path.dirname(fname)
 
+        def get_cells():
+            """generator for sequence of code blocks to run"""
+            if fname.endswith('.ipynb'):
+                from IPython.nbformat import current
+                with open(fname) as f:
+                    nb = current.read(f, 'json')
+                    if not nb.worksheets:
+                        return
+                    for cell in nb.worksheets[0].cells:
+                        yield cell.input
+            else:
+                with open(fname) as f:
+                    yield f.read()
+
         with prepended_to_syspath(dname):
             try:
-                with open(fname) as thefile:
+                for cell in get_cells():
                     # self.run_cell currently captures all exceptions
                     # raised in user code.  It would be nice if there were
-                    # versions of runlines, execfile that did raise, so
+                    # versions of run_cell that did raise, so
                     # we could catch the errors.
-                    self.run_cell(thefile.read(), store_history=False, shell_futures=False)
+                    self.run_cell(cell, store_history=False, shell_futures=False)
             except:
                 self.showtraceback()
                 warn('Unknown failure executing file: <%s>' % fname)

IPython/core/magics/execution.py

@@ -552,7 +552,7 b' python-profiler package from non-free.""")'
           details on the options available specifically for profiling.
 
         There is one special usage for which the text above doesn't apply:
-        if the filename ends with .ipy, the file is run as ipython script,
+        if the filename ends with .ipy[nb], the file is run as ipython script,
         just as if the commands were written on IPython prompt.
 
         -m
@@ -596,7 +596,7 b' python-profiler package from non-free.""")'
             error(msg)
             return
 
-        if filename.lower().endswith('.ipy'):
+        if filename.lower().endswith(('.ipy', '.ipynb')):
             with preserve_keys(self.shell.user_ns, '__file__'):
                 self.shell.user_ns['__file__'] = filename
                 self.shell.safe_execfile_ipy(filename)