Fixed bug when linking kernel to new code cells

IPython/html/services/notebooks/handlers.py

@@ -1,200 +1,199 b''
 """Tornado handlers for the notebooks web service.
 
 Authors:
 
 * Brian Granger
 """
 
 #-----------------------------------------------------------------------------
 #  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from tornado import web
 import ast
 
 from zmq.utils import jsonapi
 
 from IPython.utils.jsonutil import date_default
 
 from ...base.handlers import IPythonHandler
 
 #-----------------------------------------------------------------------------
 # Notebook web service handlers
 #-----------------------------------------------------------------------------
 
 
 class NotebookRootHandler(IPythonHandler):
 
     @web.authenticated
     def get(self):
         nbm = self.notebook_manager
         km = self.kernel_manager
         notebooks = nbm.list_notebooks("")
         self.finish(jsonapi.dumps(notebooks))
 
     @web.authenticated
     def post(self):
         nbm = self.notebook_manager
         notebook_name = nbm.new_notebook()
         model = nbm.notebook_model(notebook_name)
         self.set_header('Location', '{0}api/notebooks/{1}'.format(self.base_project_url, notebook_name))
         self.finish(jsonapi.dumps(model))
         
         
 class NotebookRootRedirect(IPythonHandler):
 
     @authenticate_unless_readonly
     def get(self):
         self.redirect("/api/notebooks")
 
 
 class NotebookHandler(IPythonHandler):
 
     SUPPORTED_METHODS = ('GET', 'PUT', 'PATCH', 'DELETE')
 
     @web.authenticated
     def get(self, notebook_path):
         nbm = self.notebook_manager
         name, path = nbm.named_notebook_path(notebook_path)
         
         if name == None:
             notebooks = nbm.list_notebooks(path)
             self.finish(jsonapi.dumps(notebooks))
         else:
             format = self.get_argument('format', default='json')
             model = nbm.notebook_model(name,path)
             data, name = nbm.get_notebook(model, format)
 
             if format == u'json':
                 self.set_header('Content-Type', 'application/json')
                 self.set_header('Content-Disposition','attachment; filename="%s.ipynb"' % name)
             elif format == u'py':
                 self.set_header('Content-Type', 'application/x-python')
                 self.set_header('Content-Disposition','attachment; filename="%s.py"' % name)
             #self.set_header('Last-Modified', last_mod)
             self.finish(jsonapi.dumps(model))
 
     @web.authenticated
     def patch(self, notebook_path):
         nbm = self.notebook_manager
         notebook_name, notebook_path = nbm.named_notebook_path(notebook_path)
         data = jsonapi.loads(self.request.body)
         model = nbm.change_notebook(data, notebook_name, notebook_path)
-        self.log.info(model)
         self.finish(jsonapi.dumps(model))
 
     @web.authenticated
     def put(self, notebook_path):
         nbm = self.notebook_manager
         notebook_name, notebook_path = nbm.named_notebook_path(notebook_path)        
         if notebook_name == None:
             body = self.request.body.strip()
             format = self.get_argument('format', default='json')
             name = self.get_argument('name', default=None)
             if body:
                 notebook_name = nbm.save_new_notebook(body, notebook_path=notebook_path, name=name, format=format)
             else:
                 notebook_name = nbm.new_notebook(notebook_path=notebook_path)
             if notebook_path==None:
                 self.set_header('Location', nbm.notebook_dir + '/'+ notebook_name)
             else:
                 self.set_header('Location', nbm.notebook_dir + '/'+ notebook_path + '/' + notebook_name)
             model = nbm.notebook_model(notebook_name, notebook_path)
             self.finish(jsonapi.dumps(model))
         else:            
             format = self.get_argument('format', default='json')
             name = self.get_argument('name', default=None)
             nbm.save_notebook(self.request.body, notebook_path=notebook_path, name=name, format=format)
             model = nbm.notebook_model(notebook_name, notebook_path)
             self.set_status(204)
             self.finish(jsonapi.dumps(model))
 
     @web.authenticated
     def delete(self, notebook_path):
         nbm = self.notebook_manager
         name, path = nbm.named_notebook_path(notebook_path)
         nbm.delete_notebook(name, path)
         self.set_status(204)
         self.finish()
 
 
 class NotebookCheckpointsHandler(IPythonHandler):
     
     SUPPORTED_METHODS = ('GET', 'POST')
     
     @web.authenticated
     def get(self, notebook_path):
         """get lists checkpoints for a notebook"""
         nbm = self.notebook_manager
         name, path = nbm.named_notebook_path(notebook_path)
         checkpoints = nbm.list_checkpoints(name, path)
         data = jsonapi.dumps(checkpoints, default=date_default)
         self.finish(data)
     
     @web.authenticated
     def post(self, notebook_path):
         """post creates a new checkpoint"""
         nbm = self.notebook_manager
         name, path = nbm.named_notebook_path(notebook_path)
         checkpoint = nbm.create_checkpoint(name, path)
         data = jsonapi.dumps(checkpoint, default=date_default)
         if path == None:
             self.set_header('Location', '{0}notebooks/{1}/checkpoints/{2}'.format(
                 self.base_project_url, name, checkpoint['checkpoint_id']
                 ))
         else:
             self.set_header('Location', '{0}notebooks/{1}/{2}/checkpoints/{3}'.format(
                 self.base_project_url, path, name, checkpoint['checkpoint_id']
                 ))
         self.finish(data)
 
 
 class ModifyNotebookCheckpointsHandler(IPythonHandler):
     
     SUPPORTED_METHODS = ('POST', 'DELETE')
     
     @web.authenticated
     def post(self, notebook_path, checkpoint_id):
         """post restores a notebook from a checkpoint"""
         nbm = self.notebook_manager
         name, path = nbm.named_notebook_path(notebook_path)
         nbm.restore_checkpoint(name, checkpoint_id, path)
         self.set_status(204)
         self.finish()
     
     @web.authenticated
     def delete(self, notebook_path, checkpoint_id):
         """delete clears a checkpoint for a given notebook"""
         nbm = self.notebook_manager
         name, path = nbm.named_notebook_path(notebook_path)
         nbm.delete_checkpoint(name, checkpoint_id, path)
         self.set_status(204)
         self.finish()
         
 #-----------------------------------------------------------------------------
 # URL to handler mappings
 #-----------------------------------------------------------------------------
 
 
 _notebook_path_regex = r"(?P<notebook_path>.+)"
 _checkpoint_id_regex = r"(?P<checkpoint_id>[\w-]+)"
 
 default_handlers = [
     (r"api/notebooks/%s/checkpoints" % _notebook_path_regex, NotebookCheckpointsHandler),
     (r"api/notebooks/%s/checkpoints/%s" % (_notebook_path_regex, _checkpoint_id_regex),
         ModifyNotebookCheckpointsHandler),
     (r"api/notebooks/%s" % _notebook_path_regex, NotebookHandler),
     (r"api/notebooks/", NotebookRootRedirect),
     (r"api/notebooks", NotebookRootHandler),
 ]
 
 
 
 

IPython/html/static/notebook/js/codecell.js

@@ -1,445 +1,445 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008-2011  The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // CodeCell
 //============================================================================
 /**
  * An extendable module that provide base functionnality to create cell for notebook.
  * @module IPython
  * @namespace IPython
  * @submodule CodeCell
  */
 
 
 /* local util for codemirror */
 var posEq = function(a, b) {return a.line == b.line && a.ch == b.ch;}
 
 /**
  *
  * function to delete until previous non blanking space character
  * or first multiple of 4 tabstop.
  * @private
  */
 CodeMirror.commands.delSpaceToPrevTabStop = function(cm){
     var from = cm.getCursor(true), to = cm.getCursor(false), sel = !posEq(from, to);
     if (!posEq(from, to)) {cm.replaceRange("", from, to); return}
     var cur = cm.getCursor(), line = cm.getLine(cur.line);
     var tabsize = cm.getOption('tabSize');
     var chToPrevTabStop = cur.ch-(Math.ceil(cur.ch/tabsize)-1)*tabsize;
     var from = {ch:cur.ch-chToPrevTabStop,line:cur.line}
     var select = cm.getRange(from,cur)
     if( select.match(/^\ +$/) != null){
         cm.replaceRange("",from,cur)
     } else {
         cm.deleteH(-1,"char")
     }
 };
 
 
 var IPython = (function (IPython) {
     "use strict";
 
     var utils = IPython.utils;
     var key   = IPython.utils.keycodes;
 
     /**
      * A Cell conceived to write code.
      *
      * The kernel doesn't have to be set at creation time, in that case
      * it will be null and set_kernel has to be called later.
      * @class CodeCell
      * @extends IPython.Cell
      *
      * @constructor
      * @param {Object|null} kernel
      * @param {object|undefined} [options]
      *      @param [options.cm_config] {object} config to pass to CodeMirror
      */
-    var CodeCell = function (kernel, options) {
-        this.kernel = kernel || null;
+    var CodeCell = function (session, options) {
+        this.session = session || null;
         this.code_mirror = null;
         this.input_prompt_number = null;
         this.collapsed = false;
         this.cell_type = "code";
         this.last_msg_id = null;
 
 
         var cm_overwrite_options  = {
             onKeyEvent: $.proxy(this.handle_codemirror_keyevent,this)
         };
 
         options = this.mergeopt(CodeCell, options, {cm_config:cm_overwrite_options});
 
         IPython.Cell.apply(this,[options]);
 
         var that = this;
         this.element.focusout(
             function() { that.auto_highlight(); }
         );
     };
 
     CodeCell.options_default = {
         cm_config : {
             extraKeys: {
                 "Tab" :  "indentMore",
                 "Shift-Tab" : "indentLess",
                 "Backspace" : "delSpaceToPrevTabStop",
                 "Cmd-/" : "toggleComment",
                 "Ctrl-/" : "toggleComment"
             },
             mode: 'ipython',
             theme: 'ipython',
             matchBrackets: true
         }
     };
 
 
     CodeCell.prototype = new IPython.Cell();
 
     /**
      * @method auto_highlight
      */
     CodeCell.prototype.auto_highlight = function () {
         this._auto_highlight(IPython.config.cell_magic_highlight)
     };
 
     /** @method create_element */
     CodeCell.prototype.create_element = function () {
         IPython.Cell.prototype.create_element.apply(this, arguments);
 
         var cell =  $('<div></div>').addClass('cell border-box-sizing code_cell');
         cell.attr('tabindex','2');
 
         this.celltoolbar = new IPython.CellToolbar(this);
 
         var input = $('<div></div>').addClass('input');
         var vbox = $('<div/>').addClass('vbox box-flex1')
         input.append($('<div/>').addClass('prompt input_prompt'));
         vbox.append(this.celltoolbar.element);
         var input_area = $('<div/>').addClass('input_area');
         this.code_mirror = CodeMirror(input_area.get(0), this.cm_config);
         $(this.code_mirror.getInputField()).attr("spellcheck", "false");
         vbox.append(input_area);
         input.append(vbox);
         var output = $('<div></div>');
         cell.append(input).append(output);
         this.element = cell;
         this.output_area = new IPython.OutputArea(output, true);
 
         // construct a completer only if class exist
         // otherwise no print view
         if (IPython.Completer !== undefined)
         {
             this.completer = new IPython.Completer(this);
         }
     };
 
     /**
      *  This method gets called in CodeMirror's onKeyDown/onKeyPress
      *  handlers and is used to provide custom key handling. Its return
      *  value is used to determine if CodeMirror should ignore the event:
      *  true = ignore, false = don't ignore.
      *  @method handle_codemirror_keyevent
      */
     CodeCell.prototype.handle_codemirror_keyevent = function (editor, event) {
 
         var that = this;
         // whatever key is pressed, first, cancel the tooltip request before
         // they are sent, and remove tooltip if any, except for tab again
         if (event.type === 'keydown' && event.which != key.TAB ) {
             IPython.tooltip.remove_and_cancel_tooltip();
         };
 
         var cur = editor.getCursor();
         if (event.keyCode === key.ENTER){
             this.auto_highlight();
         }
 
         if (event.keyCode === key.ENTER && (event.shiftKey || event.ctrlKey)) {
             // Always ignore shift-enter in CodeMirror as we handle it.
             return true;
         } else if (event.which === 40 && event.type === 'keypress' && IPython.tooltip.time_before_tooltip >= 0) {
             // triger on keypress (!) otherwise inconsistent event.which depending on plateform
             // browser and keyboard layout !
             // Pressing '(' , request tooltip, don't forget to reappend it
             // The second argument says to hide the tooltip if the docstring
             // is actually empty
             IPython.tooltip.pending(that, true);
         } else if (event.which === key.UPARROW && event.type === 'keydown') {
             // If we are not at the top, let CM handle the up arrow and
             // prevent the global keydown handler from handling it.
             if (!that.at_top()) {
                 event.stop();
                 return false;
             } else {
                 return true;
             };
         } else if (event.which === key.ESC) {
             return IPython.tooltip.remove_and_cancel_tooltip(true);
         } else if (event.which === key.DOWNARROW && event.type === 'keydown') {
             // If we are not at the bottom, let CM handle the down arrow and
             // prevent the global keydown handler from handling it.
             if (!that.at_bottom()) {
                 event.stop();
                 return false;
             } else {
                 return true;
             };
         } else if (event.keyCode === key.TAB && event.type == 'keydown' && event.shiftKey) {
                 if (editor.somethingSelected()){
                     var anchor = editor.getCursor("anchor");
                     var head = editor.getCursor("head");
                     if( anchor.line != head.line){
                         return false;
                     }
                 }
                 IPython.tooltip.request(that);
                 event.stop();
                 return true;
         } else if (event.keyCode === key.TAB && event.type == 'keydown') {
             // Tab completion.
             //Do not trim here because of tooltip
             if (editor.somethingSelected()){return false}
             var pre_cursor = editor.getRange({line:cur.line,ch:0},cur);
             if (pre_cursor.trim() === "") {
                 // Don't autocomplete if the part of the line before the cursor
                 // is empty.  In this case, let CodeMirror handle indentation.
                 return false;
             } else if ((pre_cursor.substr(-1) === "("|| pre_cursor.substr(-1) === " ") && IPython.config.tooltip_on_tab ) {
                 IPython.tooltip.request(that);
                 // Prevent the event from bubbling up.
                 event.stop();
                 // Prevent CodeMirror from handling the tab.
                 return true;
             } else {
                 event.stop();
                 this.completer.startCompletion();
                 return true;
             };
         } else {
             // keypress/keyup also trigger on TAB press, and we don't want to
             // use those to disable tab completion.
             return false;
         };
         return false;
     };
 
 
     // Kernel related calls.
 
-    CodeCell.prototype.set_kernel = function (kernel) {
-        this.kernel = kernel;
+    CodeCell.prototype.set_session = function (session) {
+        this.session = session;
     }
 
     /**
      * Execute current code cell to the kernel
      * @method execute
      */
     CodeCell.prototype.execute = function () {
         this.output_area.clear_output();
         this.set_input_prompt('*');
         this.element.addClass("running");
         if (this.last_msg_id) {
             this.kernel.clear_callbacks_for_msg(this.last_msg_id);
         }
         var callbacks = {
             'execute_reply': $.proxy(this._handle_execute_reply, this),
             'output': $.proxy(this.output_area.handle_output, this.output_area),
             'clear_output': $.proxy(this.output_area.handle_clear_output, this.output_area),
             'set_next_input': $.proxy(this._handle_set_next_input, this),
             'input_request': $.proxy(this._handle_input_request, this)
         };
         this.last_msg_id = this.kernel.execute(this.get_text(), callbacks, {silent: false, store_history: true});
     };
 
     /**
      * @method _handle_execute_reply
      * @private
      */
     CodeCell.prototype._handle_execute_reply = function (content) {
         this.set_input_prompt(content.execution_count);
         this.element.removeClass("running");
         $([IPython.events]).trigger('set_dirty.Notebook', {value: true});
     }
 
     /**
      * @method _handle_set_next_input
      * @private
      */
     CodeCell.prototype._handle_set_next_input = function (text) {
         var data = {'cell': this, 'text': text}
         $([IPython.events]).trigger('set_next_input.Notebook', data);
     }
 
     /**
      * @method _handle_input_request
      * @private
      */
     CodeCell.prototype._handle_input_request = function (content) {
         this.output_area.append_raw_input(content);
     }
 
 
     // Basic cell manipulation.
 
     CodeCell.prototype.select = function () {
         IPython.Cell.prototype.select.apply(this);
         this.code_mirror.refresh();
         this.code_mirror.focus();
         this.auto_highlight();
         // We used to need an additional refresh() after the focus, but
         // it appears that this has been fixed in CM. This bug would show
         // up on FF when a newly loaded markdown cell was edited.
     };
 
 
     CodeCell.prototype.select_all = function () {
         var start = {line: 0, ch: 0};
         var nlines = this.code_mirror.lineCount();
         var last_line = this.code_mirror.getLine(nlines-1);
         var end = {line: nlines-1, ch: last_line.length};
         this.code_mirror.setSelection(start, end);
     };
 
 
     CodeCell.prototype.collapse = function () {
         this.collapsed = true;
         this.output_area.collapse();
     };
 
 
     CodeCell.prototype.expand = function () {
         this.collapsed = false;
         this.output_area.expand();
     };
 
 
     CodeCell.prototype.toggle_output = function () {
         this.collapsed = Boolean(1 - this.collapsed);
         this.output_area.toggle_output();
     };
 
 
     CodeCell.prototype.toggle_output_scroll = function () {
     this.output_area.toggle_scroll();
     };
 
 
     CodeCell.input_prompt_classical = function (prompt_value, lines_number) {
         var ns = prompt_value || "&nbsp;";
         return 'In&nbsp;[' + ns + ']:'
     };
 
     CodeCell.input_prompt_continuation = function (prompt_value, lines_number) {
         var html = [CodeCell.input_prompt_classical(prompt_value, lines_number)];
         for(var i=1; i < lines_number; i++){html.push(['...:'])};
         return html.join('</br>')
     };
 
     CodeCell.input_prompt_function = CodeCell.input_prompt_classical;
 
 
     CodeCell.prototype.set_input_prompt = function (number) {
         var nline = 1
         if( this.code_mirror != undefined) {
            nline = this.code_mirror.lineCount();
         }
         this.input_prompt_number = number;
         var prompt_html = CodeCell.input_prompt_function(this.input_prompt_number, nline);
         this.element.find('div.input_prompt').html(prompt_html);
     };
 
 
     CodeCell.prototype.clear_input = function () {
         this.code_mirror.setValue('');
     };
 
 
     CodeCell.prototype.get_text = function () {
         return this.code_mirror.getValue();
     };
 
 
     CodeCell.prototype.set_text = function (code) {
         return this.code_mirror.setValue(code);
     };
 
 
     CodeCell.prototype.at_top = function () {
         var cursor = this.code_mirror.getCursor();
         if (cursor.line === 0 && cursor.ch === 0) {
             return true;
         } else {
             return false;
         }
     };
 
 
     CodeCell.prototype.at_bottom = function () {
         var cursor = this.code_mirror.getCursor();
         if (cursor.line === (this.code_mirror.lineCount()-1) && cursor.ch === this.code_mirror.getLine(cursor.line).length) {
             return true;
         } else {
             return false;
         }
     };
 
 
     CodeCell.prototype.clear_output = function (wait) {
         this.output_area.clear_output(wait);
     };
 
 
     // JSON serialization
 
     CodeCell.prototype.fromJSON = function (data) {
         IPython.Cell.prototype.fromJSON.apply(this, arguments);
         if (data.cell_type === 'code') {
             if (data.input !== undefined) {
                 this.set_text(data.input);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 this.code_mirror.clearHistory();
                 this.auto_highlight();
             }
             if (data.prompt_number !== undefined) {
                 this.set_input_prompt(data.prompt_number);
             } else {
                 this.set_input_prompt();
             };
             this.output_area.fromJSON(data.outputs);
             if (data.collapsed !== undefined) {
                 if (data.collapsed) {
                     this.collapse();
                 } else {
                     this.expand();
                 };
             };
         };
     };
 
 
     CodeCell.prototype.toJSON = function () {
         var data = IPython.Cell.prototype.toJSON.apply(this);
         data.input = this.get_text();
         data.cell_type = 'code';
         if (this.input_prompt_number) {
             data.prompt_number = this.input_prompt_number;
         };
         var outputs = this.output_area.toJSON();
         data.outputs = outputs;
         data.language = 'python';
         data.collapsed = this.collapsed;
         return data;
     };
 
 
     IPython.CodeCell = CodeCell;
 
     return IPython;
 }(IPython));

IPython/html/static/notebook/js/notebook.js

@@ -1,2130 +1,2146 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008-2011  The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // Notebook
 //============================================================================
 
 var IPython = (function (IPython) {
     "use strict";
 
     var utils = IPython.utils;
     var key   = IPython.utils.keycodes;
 
     /**
      * A notebook contains and manages cells.
      * 
      * @class Notebook
      * @constructor
      * @param {String} selector A jQuery selector for the notebook's DOM element
      * @param {Object} [options] A config object
      */
     var Notebook = function (selector, options) {
         var options = options || {};
         this._baseProjectUrl = options.baseProjectUrl;
         this.notebook_path = options.notebookPath;
         this.notebook_name = options.notebookName;
         this.element = $(selector);
         this.element.scroll();
         this.element.data("notebook", this);
         this.next_prompt_number = 1;
         this.session = null;
         this.clipboard = null;
         this.undelete_backup = null;
         this.undelete_index = null;
         this.undelete_below = false;
         this.paste_enabled = false;
         this.set_dirty(false);
         this.metadata = {};
         this._checkpoint_after_save = false;
         this.last_checkpoint = null;
         this.checkpoints = [];
         this.autosave_interval = 0;
         this.autosave_timer = null;
         // autosave *at most* every two minutes
         this.minimum_autosave_interval = 120000;
         // single worksheet for now
         this.worksheet_metadata = {};
         this.control_key_active = false;
         this.notebook_name = null;
         this.notebook_name_blacklist_re = /[\/\\:]/;
         this.nbformat = 3 // Increment this when changing the nbformat
         this.nbformat_minor = 0 // Increment this when changing the nbformat
         this.style();
         this.create_elements();
         this.bind_events();
     };
 
     /**
      * Tweak the notebook's CSS style.
      * 
      * @method style
      */
     Notebook.prototype.style = function () {
         $('div#notebook').addClass('border-box-sizing');
     };
 
     /**
      * Get the root URL of the notebook server.
      * 
      * @method baseProjectUrl
      * @return {String} The base project URL
      */
     Notebook.prototype.baseProjectUrl = function(){
         return this._baseProjectUrl || $('body').data('baseProjectUrl');
     };
 
     Notebook.prototype.notebookPath = function() {
         var path = $('body').data('notebookPath');
         if (path != 'None') {
             if (path[path.length-1] != '/') {
                 path = path.substring(0,path.length);
             };
             return path;
         } else {
             return '';
         }
     };
     
     /**
      * Create an HTML and CSS representation of the notebook.
      * 
      * @method create_elements
      */
     Notebook.prototype.create_elements = function () {
         // We add this end_space div to the end of the notebook div to:
         // i) provide a margin between the last cell and the end of the notebook
         // ii) to prevent the div from scrolling up when the last cell is being
         // edited, but is too low on the page, which browsers will do automatically.
         var that = this;
         this.container = $("<div/>").addClass("container").attr("id", "notebook-container");
         var end_space = $('<div/>').addClass('end_space');
         end_space.dblclick(function (e) {
             var ncells = that.ncells();
             that.insert_cell_below('code',ncells-1);
         });
         this.element.append(this.container);
         this.container.append(end_space);
         $('div#notebook').addClass('border-box-sizing');
     };
 
     /**
      * Bind JavaScript events: key presses and custom IPython events.
      * 
      * @method bind_events
      */
     Notebook.prototype.bind_events = function () {
         var that = this;
 
         $([IPython.events]).on('set_next_input.Notebook', function (event, data) {
             var index = that.find_cell_index(data.cell);
             var new_cell = that.insert_cell_below('code',index);
             new_cell.set_text(data.text);
             that.dirty = true;
         });
 
         $([IPython.events]).on('set_dirty.Notebook', function (event, data) {
             that.dirty = data.value;
         });
 
         $([IPython.events]).on('select.Cell', function (event, data) {
             var index = that.find_cell_index(data.cell);
             that.select(index);
         });
         
         $([IPython.events]).on('status_autorestarting.Kernel', function () {
             IPython.dialog.modal({
                 title: "Kernel Restarting",
                 body: "The kernel appears to have died. It will restart automatically.",
                 buttons: {
                     OK : {
                         class : "btn-primary"
                     }
                 }
             });
         });
 
 
         $(document).keydown(function (event) {
 
             // Save (CTRL+S) or (AppleKey+S)
             //metaKey = applekey on mac
             if ((event.ctrlKey || event.metaKey) && event.keyCode==83) {
                 that.save_checkpoint();
                 event.preventDefault();
                 return false;
             } else if (event.which === key.ESC) {
                 // Intercept escape at highest level to avoid closing
                 // websocket connection with firefox
                 IPython.pager.collapse();
                 event.preventDefault();
             } else if (event.which === key.SHIFT) {
                 // ignore shift keydown
                 return true;
             }
             if (event.which === key.UPARROW && !event.shiftKey) {
                 var cell = that.get_selected_cell();
                 if (cell && cell.at_top()) {
                     event.preventDefault();
                     that.select_prev();
                 };
             } else if (event.which === key.DOWNARROW && !event.shiftKey) {
                 var cell = that.get_selected_cell();
                 if (cell && cell.at_bottom()) {
                     event.preventDefault();
                     that.select_next();
                 };
             } else if (event.which === key.ENTER && event.shiftKey) {
                 that.execute_selected_cell();
                 return false;
             } else if (event.which === key.ENTER && event.altKey) {
                 // Execute code cell, and insert new in place
                 that.execute_selected_cell();
                  // Only insert a new cell, if we ended up in an already populated cell
                 if (/\S/.test(that.get_selected_cell().get_text()) == true) {
                     that.insert_cell_above('code');
                 }
                 return false;
             } else if (event.which === key.ENTER && event.ctrlKey) {
                 that.execute_selected_cell({terminal:true});
                 return false;
             } else if (event.which === 77 && event.ctrlKey && that.control_key_active == false) {
                 that.control_key_active = true;
                 return false;
             } else if (event.which === 88 && that.control_key_active) {
                 // Cut selected cell = x
                 that.cut_cell();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 67 && that.control_key_active) {
                 // Copy selected cell = c
                 that.copy_cell();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 86 && that.control_key_active) {
                 // Paste below selected cell = v
                 that.paste_cell_below();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 68 && that.control_key_active) {
                 // Delete selected cell = d
                 that.delete_cell();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 65 && that.control_key_active) {
                 // Insert code cell above selected = a
                 that.insert_cell_above('code');
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 66 && that.control_key_active) {
                 // Insert code cell below selected = b
                 that.insert_cell_below('code');
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 89 && that.control_key_active) {
                 // To code = y
                 that.to_code();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 77 && that.control_key_active) {
                 // To markdown = m
                 that.to_markdown();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 84 && that.control_key_active) {
                 // To Raw = t
                 that.to_raw();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 49 && that.control_key_active) {
                 // To Heading 1 = 1
                 that.to_heading(undefined, 1);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 50 && that.control_key_active) {
                 // To Heading 2 = 2
                 that.to_heading(undefined, 2);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 51 && that.control_key_active) {
                 // To Heading 3 = 3
                 that.to_heading(undefined, 3);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 52 && that.control_key_active) {
                 // To Heading 4 = 4
                 that.to_heading(undefined, 4);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 53 && that.control_key_active) {
                 // To Heading 5 = 5
                 that.to_heading(undefined, 5);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 54 && that.control_key_active) {
                 // To Heading 6 = 6
                 that.to_heading(undefined, 6);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 79 && that.control_key_active) {
                 // Toggle output = o
                 if (event.shiftKey){
                     that.toggle_output_scroll();
                 } else {
                     that.toggle_output();
                 }
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 83 && that.control_key_active) {
                 // Save notebook = s
                 that.save_checkpoint();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 74 && that.control_key_active) {
                 // Move cell down = j
                 that.move_cell_down();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 75 && that.control_key_active) {
                 // Move cell up = k
                 that.move_cell_up();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 80 && that.control_key_active) {
                 // Select previous = p
                 that.select_prev();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 78 && that.control_key_active) {
                 // Select next = n
                 that.select_next();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 76 && that.control_key_active) {
                 // Toggle line numbers = l
                 that.cell_toggle_line_numbers();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 73 && that.control_key_active) {
                 // Interrupt kernel = i
                 that.session.interrupt_kernel();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 190 && that.control_key_active) {
                 // Restart kernel = .  # matches qt console
                 that.restart_kernel();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 72 && that.control_key_active) {
                 // Show keyboard shortcuts = h
                 IPython.quick_help.show_keyboard_shortcuts();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 90 && that.control_key_active) {
                 // Undo last cell delete = z
                 that.undelete();
                 that.control_key_active = false;
                 return false;
             } else if ((event.which === 189 || event.which === 173) &&
                     that.control_key_active) {
                 // how fun! '-' is 189 in Chrome, but 173 in FF and Opera
                 // Split cell = -
                 that.split_cell();
                 that.control_key_active = false;
                 return false;                                               
             } else if (that.control_key_active) {
                 that.control_key_active = false;
                 return true;
             }
             return true;
         });
         
         var collapse_time = function(time){
             var app_height = $('#ipython-main-app').height(); // content height
             var splitter_height = $('div#pager_splitter').outerHeight(true);
             var new_height = app_height - splitter_height;
             that.element.animate({height : new_height + 'px'}, time);
         }
 
         this.element.bind('collapse_pager', function (event,extrap) {
             var time = (extrap != undefined) ? ((extrap.duration != undefined ) ? extrap.duration : 'fast') : 'fast';
             collapse_time(time);
         });
 
         var expand_time = function(time) {
             var app_height = $('#ipython-main-app').height(); // content height
             var splitter_height = $('div#pager_splitter').outerHeight(true);
             var pager_height = $('div#pager').outerHeight(true);
             var new_height = app_height - pager_height - splitter_height;
             that.element.animate({height : new_height + 'px'}, time);
         }
 
         this.element.bind('expand_pager', function (event, extrap) {
             var time = (extrap != undefined) ? ((extrap.duration != undefined ) ? extrap.duration : 'fast') : 'fast';
             expand_time(time);
         });
         
         // Firefox 22 broke $(window).on("beforeunload")
         // I'm not sure why or how.
         window.onbeforeunload = function (e) {
             // TODO: Make killing the kernel configurable.
             var kill_kernel = false;
             if (kill_kernel) {
-                that.kernel.kill();
+                that.session.kill_kernel();
             }
             // if we are autosaving, trigger an autosave on nav-away.
             // still warn, because if we don't the autosave may fail.
             if (that.dirty) {
                 if ( that.autosave_interval ) {
                     // schedule autosave in a timeout
                     // this gives you a chance to forcefully discard changes
                     // by reloading the page if you *really* want to.
                     // the timer doesn't start until you *dismiss* the dialog.
                     setTimeout(function () {
                         if (that.dirty) {
                             that.save_notebook();
                         }
                     }, 1000);
                     return "Autosave in progress, latest changes may be lost.";
                 } else {
                     return "Unsaved changes will be lost.";
                 }
             };
             // Null is the *only* return value that will make the browser not
             // pop up the "don't leave" dialog.
             return null;
         };
     };
 
     /**
      * Set the dirty flag, and trigger the set_dirty.Notebook event
      * 
      * @method set_dirty
      */
     Notebook.prototype.set_dirty = function (value) {
         if (value === undefined) {
             value = true;
         }
         if (this.dirty == value) {
             return;
         }
         $([IPython.events]).trigger('set_dirty.Notebook', {value: value});
     };
 
     /**
      * Scroll the top of the page to a given cell.
      * 
      * @method scroll_to_cell
      * @param {Number} cell_number An index of the cell to view
      * @param {Number} time Animation time in milliseconds
      * @return {Number} Pixel offset from the top of the container
      */
     Notebook.prototype.scroll_to_cell = function (cell_number, time) {
         var cells = this.get_cells();
         var time = time || 0;
         cell_number = Math.min(cells.length-1,cell_number);
         cell_number = Math.max(0             ,cell_number);
         var scroll_value = cells[cell_number].element.position().top-cells[0].element.position().top ;
         this.element.animate({scrollTop:scroll_value}, time);
         return scroll_value;
     };
 
     /**
      * Scroll to the bottom of the page.
      * 
      * @method scroll_to_bottom
      */
     Notebook.prototype.scroll_to_bottom = function () {
         this.element.animate({scrollTop:this.element.get(0).scrollHeight}, 0);
     };
 
     /**
      * Scroll to the top of the page.
      * 
      * @method scroll_to_top
      */
     Notebook.prototype.scroll_to_top = function () {
         this.element.animate({scrollTop:0}, 0);
     };
 
     // Edit Notebook metadata
 
     Notebook.prototype.edit_metadata = function () {
         var that = this;
         IPython.dialog.edit_metadata(this.metadata, function (md) {
             that.metadata = md;
         }, 'Notebook');
     };
 
     // Cell indexing, retrieval, etc.
 
     /**
      * Get all cell elements in the notebook.
      * 
      * @method get_cell_elements
      * @return {jQuery} A selector of all cell elements
      */
     Notebook.prototype.get_cell_elements = function () {
         return this.container.children("div.cell");
     };
 
     /**
      * Get a particular cell element.
      * 
      * @method get_cell_element
      * @param {Number} index An index of a cell to select
      * @return {jQuery} A selector of the given cell.
      */
     Notebook.prototype.get_cell_element = function (index) {
         var result = null;
         var e = this.get_cell_elements().eq(index);
         if (e.length !== 0) {
             result = e;
         }
         return result;
     };
 
     /**
      * Count the cells in this notebook.
      * 
      * @method ncells
      * @return {Number} The number of cells in this notebook
      */
     Notebook.prototype.ncells = function () {
         return this.get_cell_elements().length;
     };
 
     /**
      * Get all Cell objects in this notebook.
      * 
      * @method get_cells
      * @return {Array} This notebook's Cell objects
      */
     // TODO: we are often calling cells as cells()[i], which we should optimize
     // to cells(i) or a new method.
     Notebook.prototype.get_cells = function () {
         return this.get_cell_elements().toArray().map(function (e) {
             return $(e).data("cell");
         });
     };
 
     /**
      * Get a Cell object from this notebook.
      * 
      * @method get_cell
      * @param {Number} index An index of a cell to retrieve
      * @return {Cell} A particular cell
      */
     Notebook.prototype.get_cell = function (index) {
         var result = null;
         var ce = this.get_cell_element(index);
         if (ce !== null) {
             result = ce.data('cell');
         }
         return result;
     }
 
     /**
      * Get the cell below a given cell.
      * 
      * @method get_next_cell
      * @param {Cell} cell The provided cell
      * @return {Cell} The next cell
      */
     Notebook.prototype.get_next_cell = function (cell) {
         var result = null;
         var index = this.find_cell_index(cell);
         if (this.is_valid_cell_index(index+1)) {
             result = this.get_cell(index+1);
         }
         return result;
     }
 
     /**
      * Get the cell above a given cell.
      * 
      * @method get_prev_cell
      * @param {Cell} cell The provided cell
      * @return {Cell} The previous cell
      */
     Notebook.prototype.get_prev_cell = function (cell) {
         // TODO: off-by-one
         // nb.get_prev_cell(nb.get_cell(1)) is null
         var result = null;
         var index = this.find_cell_index(cell);
         if (index !== null && index > 1) {
             result = this.get_cell(index-1);
         }
         return result;
     }
     
     /**
      * Get the numeric index of a given cell.
      * 
      * @method find_cell_index
      * @param {Cell} cell The provided cell
      * @return {Number} The cell's numeric index
      */
     Notebook.prototype.find_cell_index = function (cell) {
         var result = null;
         this.get_cell_elements().filter(function (index) {
             if ($(this).data("cell") === cell) {
                 result = index;
             };
         });
         return result;
     };
 
     /**
      * Get a given index , or the selected index if none is provided.
      * 
      * @method index_or_selected
      * @param {Number} index A cell's index
      * @return {Number} The given index, or selected index if none is provided.
      */
     Notebook.prototype.index_or_selected = function (index) {
         var i;
         if (index === undefined || index === null) {
             i = this.get_selected_index();
             if (i === null) {
                 i = 0;
             }
         } else {
             i = index;
         }
         return i;
     };
 
     /**
      * Get the currently selected cell.
      * @method get_selected_cell
      * @return {Cell} The selected cell
      */
     Notebook.prototype.get_selected_cell = function () {
         var index = this.get_selected_index();
         return this.get_cell(index);
     };
 
     /**
      * Check whether a cell index is valid.
      * 
      * @method is_valid_cell_index
      * @param {Number} index A cell index
      * @return True if the index is valid, false otherwise
      */
     Notebook.prototype.is_valid_cell_index = function (index) {
         if (index !== null && index >= 0 && index < this.ncells()) {
             return true;
         } else {
             return false;
         };
     }
 
     /**
      * Get the index of the currently selected cell.
      
      * @method get_selected_index
      * @return {Number} The selected cell's numeric index
      */
     Notebook.prototype.get_selected_index = function () {
         var result = null;
         this.get_cell_elements().filter(function (index) {
             if ($(this).data("cell").selected === true) {
                 result = index;
             };
         });
         return result;
     };
 
 
     // Cell selection.
 
     /**
      * Programmatically select a cell.
      * 
      * @method select
      * @param {Number} index A cell's index
      * @return {Notebook} This notebook
      */
     Notebook.prototype.select = function (index) {
         if (this.is_valid_cell_index(index)) {
             var sindex = this.get_selected_index()
             if (sindex !== null && index !== sindex) {
                 this.get_cell(sindex).unselect();
             };
             var cell = this.get_cell(index);
             cell.select();
             if (cell.cell_type === 'heading') {
                 $([IPython.events]).trigger('selected_cell_type_changed.Notebook',
                     {'cell_type':cell.cell_type,level:cell.level}
                 );
             } else {
                 $([IPython.events]).trigger('selected_cell_type_changed.Notebook',
                     {'cell_type':cell.cell_type}
                 );
             };
         };
         return this;
     };
 
     /**
      * Programmatically select the next cell.
      *
      * @method select_next
      * @return {Notebook} This notebook
      */
     Notebook.prototype.select_next = function () {
         var index = this.get_selected_index();
         this.select(index+1);
         return this;
     };
 
     /**
      * Programmatically select the previous cell.
      *
      * @method select_prev
      * @return {Notebook} This notebook
      */
     Notebook.prototype.select_prev = function () {
         var index = this.get_selected_index();
         this.select(index-1);
         return this;
     };
 
 
     // Cell movement
 
     /**
      * Move given (or selected) cell up and select it.
      * 
      * @method move_cell_up
      * @param [index] {integer} cell index
      * @return {Notebook} This notebook
      **/
     Notebook.prototype.move_cell_up = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i) && i > 0) {
             var pivot = this.get_cell_element(i-1);
             var tomove = this.get_cell_element(i);
             if (pivot !== null && tomove !== null) {
                 tomove.detach();
                 pivot.before(tomove);
                 this.select(i-1);
             };
             this.set_dirty(true);
         };
         return this;
     };
 
 
     /**
      * Move given (or selected) cell down and select it
      * 
      * @method move_cell_down
      * @param [index] {integer} cell index
      * @return {Notebook} This notebook
      **/
     Notebook.prototype.move_cell_down = function (index) {
         var i = this.index_or_selected(index);
         if ( this.is_valid_cell_index(i) && this.is_valid_cell_index(i+1)) {
             var pivot = this.get_cell_element(i+1);
             var tomove = this.get_cell_element(i);
             if (pivot !== null && tomove !== null) {
                 tomove.detach();
                 pivot.after(tomove);
                 this.select(i+1);
             };
         };
         this.set_dirty();
         return this;
     };
 
 
     // Insertion, deletion.
 
     /**
      * Delete a cell from the notebook.
      * 
      * @method delete_cell
      * @param [index] A cell's numeric index
      * @return {Notebook} This notebook
      */
     Notebook.prototype.delete_cell = function (index) {
         var i = this.index_or_selected(index);
         var cell = this.get_selected_cell();
         this.undelete_backup = cell.toJSON();
         $('#undelete_cell').removeClass('ui-state-disabled');
         if (this.is_valid_cell_index(i)) {
             var ce = this.get_cell_element(i);
             ce.remove();
             if (i === (this.ncells())) {
                 this.select(i-1);
                 this.undelete_index = i - 1;
                 this.undelete_below = true;
             } else {
                 this.select(i);
                 this.undelete_index = i;
                 this.undelete_below = false;
             };
             $([IPython.events]).trigger('delete.Cell', {'cell': cell, 'index': i});
             this.set_dirty(true);
         };
         return this;
     };
 
     /**
      * Insert a cell so that after insertion the cell is at given index.
      *
      * Similar to insert_above, but index parameter is mandatory
      *
      * Index will be brought back into the accissible range [0,n]
      *
      * @method insert_cell_at_index
      * @param type {string} in ['code','markdown','heading']
      * @param [index] {int} a valid index where to inser cell
      *
      * @return cell {cell|null} created cell or null
      **/
     Notebook.prototype.insert_cell_at_index = function(type, index){
 
         var ncells = this.ncells();
         var index = Math.min(index,ncells);
             index = Math.max(index,0);
         var cell = null;
 
         if (ncells === 0 || this.is_valid_cell_index(index) || index === ncells) {
             if (type === 'code') {
-                cell = new IPython.CodeCell(this.kernel);
+                cell = new IPython.CodeCell(this.session);
                 cell.set_input_prompt();
             } else if (type === 'markdown') {
                 cell = new IPython.MarkdownCell();
             } else if (type === 'raw') {
                 cell = new IPython.RawCell();
             } else if (type === 'heading') {
                 cell = new IPython.HeadingCell();
             }
 
             if(this._insert_element_at_index(cell.element,index)){
                 cell.render();
                 this.select(this.find_cell_index(cell));
                 $([IPython.events]).trigger('create.Cell', {'cell': cell, 'index': index});
                 this.set_dirty(true);
             }
         }
         return cell;
 
     };
 
     /**
      * Insert an element at given cell index.
      *
      * @method _insert_element_at_index
      * @param element {dom element} a cell element
      * @param [index] {int} a valid index where to inser cell
      * @private
      *
      * return true if everything whent fine.
      **/
     Notebook.prototype._insert_element_at_index = function(element, index){
         if (element === undefined){
             return false;
         }
 
         var ncells = this.ncells();
 
         if (ncells === 0) {
             // special case append if empty
             this.element.find('div.end_space').before(element);
         } else if ( ncells === index ) {
             // special case append it the end, but not empty
             this.get_cell_element(index-1).after(element);
         } else if (this.is_valid_cell_index(index)) {
             // otherwise always somewhere to append to
             this.get_cell_element(index).before(element);
         } else {
             return false;
         }
 
         if (this.undelete_index !== null && index <= this.undelete_index) {
             this.undelete_index = this.undelete_index + 1;
             this.set_dirty(true);
         }
         return true;
     };
 
     /**
      * Insert a cell of given type above given index, or at top
      * of notebook if index smaller than 0.
      *
      * default index value is the one of currently selected cell
      *
      * @method insert_cell_above
      * @param type {string} cell type
      * @param [index] {integer}
      *
      * @return handle to created cell or null
      **/
     Notebook.prototype.insert_cell_above = function (type, index) {
         index = this.index_or_selected(index);
         return this.insert_cell_at_index(type, index);
     };
 
     /**
      * Insert a cell of given type below given index, or at bottom
      * of notebook if index greater thatn number of cell
      *
      * default index value is the one of currently selected cell
      *
      * @method insert_cell_below
      * @param type {string} cell type
      * @param [index] {integer}
      *
      * @return handle to created cell or null
      *
      **/
     Notebook.prototype.insert_cell_below = function (type, index) {
         index = this.index_or_selected(index);
         return this.insert_cell_at_index(type, index+1);
     };
 
 
     /**
      * Insert cell at end of notebook
      *
      * @method insert_cell_at_bottom
      * @param {String} type cell type
      *
      * @return the added cell; or null
      **/
     Notebook.prototype.insert_cell_at_bottom = function (type){
         var len = this.ncells();
         return this.insert_cell_below(type,len-1);
     };
 
     /**
      * Turn a cell into a code cell.
      * 
      * @method to_code
      * @param {Number} [index] A cell's index
      */
     Notebook.prototype.to_code = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             if (!(source_cell instanceof IPython.CodeCell)) {
                 var target_cell = this.insert_cell_below('code',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 }
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
         };
     };
 
     /**
      * Turn a cell into a Markdown cell.
      * 
      * @method to_markdown
      * @param {Number} [index] A cell's index
      */
     Notebook.prototype.to_markdown = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             if (!(source_cell instanceof IPython.MarkdownCell)) {
                 var target_cell = this.insert_cell_below('markdown',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 };
                 // The edit must come before the set_text.
                 target_cell.edit();
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
         };
     };
 
     /**
      * Turn a cell into a raw text cell.
      * 
      * @method to_raw
      * @param {Number} [index] A cell's index
      */
     Notebook.prototype.to_raw = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             var target_cell = null;
             if (!(source_cell instanceof IPython.RawCell)) {
                 target_cell = this.insert_cell_below('raw',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 };
                 // The edit must come before the set_text.
                 target_cell.edit();
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
         };
     };
 
     /**
      * Turn a cell into a heading cell.
      * 
      * @method to_heading
      * @param {Number} [index] A cell's index
      * @param {Number} [level] A heading level (e.g., 1 becomes &lt;h1&gt;)
      */
     Notebook.prototype.to_heading = function (index, level) {
         level = level || 1;
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             var target_cell = null;
             if (source_cell instanceof IPython.HeadingCell) {
                 source_cell.set_level(level);
             } else {
                 target_cell = this.insert_cell_below('heading',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 };
                 // The edit must come before the set_text.
                 target_cell.set_level(level);
                 target_cell.edit();
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
             $([IPython.events]).trigger('selected_cell_type_changed.Notebook',
                 {'cell_type':'heading',level:level}
             );
         };
     };
 
 
     // Cut/Copy/Paste
 
     /**
      * Enable UI elements for pasting cells.
      * 
      * @method enable_paste
      */
     Notebook.prototype.enable_paste = function () {
         var that = this;
         if (!this.paste_enabled) {
             $('#paste_cell_replace').removeClass('ui-state-disabled')
                 .on('click', function () {that.paste_cell_replace();});
             $('#paste_cell_above').removeClass('ui-state-disabled')
                 .on('click', function () {that.paste_cell_above();});
             $('#paste_cell_below').removeClass('ui-state-disabled')
                 .on('click', function () {that.paste_cell_below();});
             this.paste_enabled = true;
         };
     };
 
     /**
      * Disable UI elements for pasting cells.
      * 
      * @method disable_paste
      */
     Notebook.prototype.disable_paste = function () {
         if (this.paste_enabled) {
             $('#paste_cell_replace').addClass('ui-state-disabled').off('click');
             $('#paste_cell_above').addClass('ui-state-disabled').off('click');
             $('#paste_cell_below').addClass('ui-state-disabled').off('click');
             this.paste_enabled = false;
         };
     };
 
     /**
      * Cut a cell.
      * 
      * @method cut_cell
      */
     Notebook.prototype.cut_cell = function () {
         this.copy_cell();
         this.delete_cell();
     }
 
     /**
      * Copy a cell.
      * 
      * @method copy_cell
      */
     Notebook.prototype.copy_cell = function () {
         var cell = this.get_selected_cell();
         this.clipboard = cell.toJSON();
         this.enable_paste();
     };
 
     /**
      * Replace the selected cell with a cell in the clipboard.
      * 
      * @method paste_cell_replace
      */
     Notebook.prototype.paste_cell_replace = function () {
         if (this.clipboard !== null && this.paste_enabled) {
             var cell_data = this.clipboard;
             var new_cell = this.insert_cell_above(cell_data.cell_type);
             new_cell.fromJSON(cell_data);
             var old_cell = this.get_next_cell(new_cell);
             this.delete_cell(this.find_cell_index(old_cell));
             this.select(this.find_cell_index(new_cell));
         };
     };
 
     /**
      * Paste a cell from the clipboard above the selected cell.
      * 
      * @method paste_cell_above
      */
     Notebook.prototype.paste_cell_above = function () {
         if (this.clipboard !== null && this.paste_enabled) {
             var cell_data = this.clipboard;
             var new_cell = this.insert_cell_above(cell_data.cell_type);
             new_cell.fromJSON(cell_data);
         };
     };
 
     /**
      * Paste a cell from the clipboard below the selected cell.
      * 
      * @method paste_cell_below
      */
     Notebook.prototype.paste_cell_below = function () {
         if (this.clipboard !== null && this.paste_enabled) {
             var cell_data = this.clipboard;
             var new_cell = this.insert_cell_below(cell_data.cell_type);
             new_cell.fromJSON(cell_data);
         };
     };
 
     // Cell undelete
 
     /**
      * Restore the most recently deleted cell.
      * 
      * @method undelete
      */
     Notebook.prototype.undelete = function() {
         if (this.undelete_backup !== null && this.undelete_index !== null) {
             var current_index = this.get_selected_index();
             if (this.undelete_index < current_index) {
                 current_index = current_index + 1;
             }
             if (this.undelete_index >= this.ncells()) {
                 this.select(this.ncells() - 1);
             }
             else {
                 this.select(this.undelete_index);
             }
             var cell_data = this.undelete_backup;
             var new_cell = null;
             if (this.undelete_below) {
                 new_cell = this.insert_cell_below(cell_data.cell_type);
             } else {
                 new_cell = this.insert_cell_above(cell_data.cell_type);
             }
             new_cell.fromJSON(cell_data);
             this.select(current_index);
             this.undelete_backup = null;
             this.undelete_index = null;
         }
         $('#undelete_cell').addClass('ui-state-disabled');
     }
 
     // Split/merge
 
     /**
      * Split the selected cell into two, at the cursor.
      * 
      * @method split_cell
      */
     Notebook.prototype.split_cell = function () {
         // Todo: implement spliting for other cell types.
         var cell = this.get_selected_cell();
         if (cell.is_splittable()) {
             var texta = cell.get_pre_cursor();
             var textb = cell.get_post_cursor();
             if (cell instanceof IPython.CodeCell) {
                 cell.set_text(texta);
                 var new_cell = this.insert_cell_below('code');
                 new_cell.set_text(textb);
             } else if (cell instanceof IPython.MarkdownCell) {
                 cell.set_text(texta);
                 cell.render();
                 var new_cell = this.insert_cell_below('markdown');
                 new_cell.edit(); // editor must be visible to call set_text
                 new_cell.set_text(textb);
                 new_cell.render();
             }
         };
     };
 
     /**
      * Combine the selected cell into the cell above it.
      * 
      * @method merge_cell_above
      */
     Notebook.prototype.merge_cell_above = function () {
         var index = this.get_selected_index();
         var cell = this.get_cell(index);
         if (!cell.is_mergeable()) {
             return;
         }
         if (index > 0) {
             var upper_cell = this.get_cell(index-1);
             if (!upper_cell.is_mergeable()) {
                 return;
             }
             var upper_text = upper_cell.get_text();
             var text = cell.get_text();
             if (cell instanceof IPython.CodeCell) {
                 cell.set_text(upper_text+'\n'+text);
             } else if (cell instanceof IPython.MarkdownCell) {
                 cell.edit();
                 cell.set_text(upper_text+'\n'+text);
                 cell.render();
             };
             this.delete_cell(index-1);
             this.select(this.find_cell_index(cell));
         };
     };
 
     /**
      * Combine the selected cell into the cell below it.
      * 
      * @method merge_cell_below
      */
     Notebook.prototype.merge_cell_below = function () {
         var index = this.get_selected_index();
         var cell = this.get_cell(index);
         if (!cell.is_mergeable()) {
             return;
         }
         if (index < this.ncells()-1) {
             var lower_cell = this.get_cell(index+1);
             if (!lower_cell.is_mergeable()) {
                 return;
             }
             var lower_text = lower_cell.get_text();
             var text = cell.get_text();
             if (cell instanceof IPython.CodeCell) {
                 cell.set_text(text+'\n'+lower_text);
             } else if (cell instanceof IPython.MarkdownCell) {
                 cell.edit();
                 cell.set_text(text+'\n'+lower_text);
                 cell.render();
             };
             this.delete_cell(index+1);
             this.select(this.find_cell_index(cell));
         };
     };
 
 
     // Cell collapsing and output clearing
 
     /**
      * Hide a cell's output.
      * 
      * @method collapse
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.collapse = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).collapse();
         this.set_dirty(true);
     };
 
     /**
      * Show a cell's output.
      * 
      * @method expand
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.expand = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).expand();
         this.set_dirty(true);
     };
 
     /** Toggle whether a cell's output is collapsed or expanded.
      * 
      * @method toggle_output
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.toggle_output = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).toggle_output();
         this.set_dirty(true);
     };
 
     /**
      * Toggle a scrollbar for long cell outputs.
      * 
      * @method toggle_output_scroll
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.toggle_output_scroll = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).toggle_output_scroll();
     };
 
     /**
      * Hide each code cell's output area.
      * 
      * @method collapse_all_output
      */
     Notebook.prototype.collapse_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].output_area.collapse();
             }
         };
         // this should not be set if the `collapse` key is removed from nbformat
         this.set_dirty(true);
     };
 
     /**
      * Expand each code cell's output area, and add a scrollbar for long output.
      * 
      * @method scroll_all_output
      */
     Notebook.prototype.scroll_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].output_area.expand();
                 cells[i].output_area.scroll_if_long();
             }
         };
         // this should not be set if the `collapse` key is removed from nbformat
         this.set_dirty(true);
     };
 
     /**
      * Expand each code cell's output area, and remove scrollbars.
      * 
      * @method expand_all_output
      */
     Notebook.prototype.expand_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].output_area.expand();
                 cells[i].output_area.unscroll_area();
             }
         };
         // this should not be set if the `collapse` key is removed from nbformat
         this.set_dirty(true);
     };
 
     /**
      * Clear each code cell's output area.
      * 
      * @method clear_all_output
      */
     Notebook.prototype.clear_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].clear_output();
                 // Make all In[] prompts blank, as well
                 // TODO: make this configurable (via checkbox?)
                 cells[i].set_input_prompt();
             }
         };
         this.set_dirty(true);
     };
 
 
     // Other cell functions: line numbers, ...
 
     /**
      * Toggle line numbers in the selected cell's input area.
      * 
      * @method cell_toggle_line_numbers
      */
     Notebook.prototype.cell_toggle_line_numbers = function() {
         this.get_selected_cell().toggle_line_numbers();
     };
 
     // Session related things
 
     /**
      * Start a new session and set it on each code cell.
      * 
      * @method start_session
      */
     Notebook.prototype.start_session = function () {
         var notebook_info = this.notebookPath() + this.notebook_name;
         this.session = new IPython.Session(notebook_info, this);
         this.session.start();
+        this.link_cells_to_session();
     };
 
+
+    /**
+     * Once a session is started, link the code cells to the session
+     *
+     */
+    Notebook.prototype.link_cells_to_session= function(){
+        var ncells = this.ncells();
+        for (var i=0; i<ncells; i++) {
+            var cell = this.get_cell(i);
+            if (cell instanceof IPython.CodeCell) {
+                cell.set_session(this.session);
+            };
+        };  
+    };
+    
     /**
      * Prompt the user to restart the IPython kernel.
      * 
      * @method restart_kernel
      */
     Notebook.prototype.restart_kernel = function () {
         var that = this;
         IPython.dialog.modal({
             title : "Restart kernel or continue running?",
             body : $("<p/>").html(
                 'Do you want to restart the current kernel?  You will lose all variables defined in it.'
             ),
             buttons : {
                 "Continue running" : {},
                 "Restart" : {
                     "class" : "btn-danger",
                     "click" : function() {
                         that.session.restart_kernel();
                     }
                 }
             }
         });
     };
     
     /**
      * Run the selected cell.
      * 
      * Execute or render cell outputs.
      * 
      * @method execute_selected_cell
      * @param {Object} options Customize post-execution behavior
      */
     Notebook.prototype.execute_selected_cell = function (options) {
         // add_new: should a new cell be added if we are at the end of the nb
         // terminal: execute in terminal mode, which stays in the current cell
         var default_options = {terminal: false, add_new: true};
         $.extend(default_options, options);
         var that = this;
         var cell = that.get_selected_cell();
         var cell_index = that.find_cell_index(cell);
         if (cell instanceof IPython.CodeCell) {
             cell.execute();
         }
         if (default_options.terminal) {
             cell.select_all();
         } else {
             if ((cell_index === (that.ncells()-1)) && default_options.add_new) {
                 that.insert_cell_below('code');
                 // If we are adding a new cell at the end, scroll down to show it.
                 that.scroll_to_bottom();
             } else {
                 that.select(cell_index+1);
             };
         };
         this.set_dirty(true);
     };
 
     /**
      * Execute all cells below the selected cell.
      * 
      * @method execute_cells_below
      */
     Notebook.prototype.execute_cells_below = function () {
         this.execute_cell_range(this.get_selected_index(), this.ncells());
         this.scroll_to_bottom();
     };
 
     /**
      * Execute all cells above the selected cell.
      * 
      * @method execute_cells_above
      */
     Notebook.prototype.execute_cells_above = function () {
         this.execute_cell_range(0, this.get_selected_index());
     };
 
     /**
      * Execute all cells.
      * 
      * @method execute_all_cells
      */
     Notebook.prototype.execute_all_cells = function () {
         this.execute_cell_range(0, this.ncells());
         this.scroll_to_bottom();
     };
 
     /**
      * Execute a contiguous range of cells.
      * 
      * @method execute_cell_range
      * @param {Number} start Index of the first cell to execute (inclusive)
      * @param {Number} end Index of the last cell to execute (exclusive)
      */
     Notebook.prototype.execute_cell_range = function (start, end) {
         for (var i=start; i<end; i++) {
             this.select(i);
             this.execute_selected_cell({add_new:false});
         };
     };
 
     // Persistance and loading
 
     /**
      * Getter method for this notebook's ID.
      * 
      * @method get_notebook_id
      * @return {String} This notebook's ID
      */
     Notebook.prototype.get_notebook_id = function () {
         return this.notebook_id;
     };
 
     /**
      * Getter method for this notebook's name.
      * 
      * @method get_notebook_name
      * @return {String} This notebook's name
      */
     Notebook.prototype.get_notebook_name = function () {
         return this.notebook_name;
     };
 
     /**
      * Setter method for this notebook's name.
      *
      * @method set_notebook_name
      * @param {String} name A new name for this notebook
      */
     Notebook.prototype.set_notebook_name = function (name) {
         this.notebook_name = name;
     };
 
     /**
      * Check that a notebook's name is valid.
      * 
      * @method test_notebook_name
      * @param {String} nbname A name for this notebook
      * @return {Boolean} True if the name is valid, false if invalid
      */
     Notebook.prototype.test_notebook_name = function (nbname) {
         nbname = nbname || '';
         if (this.notebook_name_blacklist_re.test(nbname) == false && nbname.length>0) {
             return true;
         } else {
             return false;
         };
     };
 
     /**
      * Load a notebook from JSON (.ipynb).
      * 
      * This currently handles one worksheet: others are deleted.
      * 
      * @method fromJSON
      * @param {Object} data JSON representation of a notebook
      */
     Notebook.prototype.fromJSON = function (data) {
         data = data.content;
         var ncells = this.ncells();
         var i;
         for (i=0; i<ncells; i++) {
             // Always delete cell 0 as they get renumbered as they are deleted.
             this.delete_cell(0);
         };
         // Save the metadata and name.
         this.metadata = data.metadata;
         this.notebook_name = data.metadata.name +'.ipynb';
         // Only handle 1 worksheet for now.
         var worksheet = data.worksheets[0];
         if (worksheet !== undefined) {
             if (worksheet.metadata) {
                 this.worksheet_metadata = worksheet.metadata;
             }
             var new_cells = worksheet.cells;
             ncells = new_cells.length;
             var cell_data = null;
             var new_cell = null;
             for (i=0; i<ncells; i++) {
                 cell_data = new_cells[i];
                 // VERSIONHACK: plaintext -> raw
                 // handle never-released plaintext name for raw cells
                 if (cell_data.cell_type === 'plaintext'){
                     cell_data.cell_type = 'raw';
                 }
 
                 new_cell = this.insert_cell_below(cell_data.cell_type);
                 new_cell.fromJSON(cell_data);
             };
         };
         if (data.worksheets.length > 1) {
             IPython.dialog.modal({
                 title : "Multiple worksheets",
                 body : "This notebook has " + data.worksheets.length + " worksheets, " +
                     "but this version of IPython can only handle the first.  " +
                     "If you save this notebook, worksheets after the first will be lost.",
                 buttons : {
                     OK : {
                         class : "btn-danger"
                     }
                 }
             });
         }
     };
 
     /**
      * Dump this notebook into a JSON-friendly object.
      * 
      * @method toJSON
      * @return {Object} A JSON-friendly representation of this notebook.
      */
     Notebook.prototype.toJSON = function () {
         var cells = this.get_cells();
         var ncells = cells.length;
         var cell_array = new Array(ncells);
         for (var i=0; i<ncells; i++) {
             cell_array[i] = cells[i].toJSON();
         };
         var data = {
             // Only handle 1 worksheet for now.
             worksheets : [{
                 cells: cell_array,
                 metadata: this.worksheet_metadata
             }],
             metadata : this.metadata
         };
         return data;
     };
 
     /**
      * Start an autosave timer, for periodically saving the notebook.
      * 
      * @method set_autosave_interval
      * @param {Integer} interval the autosave interval in milliseconds
      */
     Notebook.prototype.set_autosave_interval = function (interval) {
         var that = this;
         // clear previous interval, so we don't get simultaneous timers
         if (this.autosave_timer) {
             clearInterval(this.autosave_timer);
         }
         
         this.autosave_interval = this.minimum_autosave_interval = interval;
         if (interval) {
             this.autosave_timer = setInterval(function() {
                 if (that.dirty) {
                     that.save_notebook();
                 }
             }, interval);
             $([IPython.events]).trigger("autosave_enabled.Notebook", interval);
         } else {
             this.autosave_timer = null;
             $([IPython.events]).trigger("autosave_disabled.Notebook");
         };
     };
     
     /**
      * Save this notebook on the server.
      * 
      * @method save_notebook
      */
     Notebook.prototype.save_notebook = function () {
         // We may want to move the name/id/nbformat logic inside toJSON?
         var data = this.toJSON();
         data.metadata.name = this.notebook_name;
         data.nbformat = this.nbformat;
         data.nbformat_minor = this.nbformat_minor;
         
         // time the ajax call for autosave tuning purposes.
         var start =  new Date().getTime();
         console.log(JSON.stringify(data))
         // We do the call with settings so we can set cache to false.
         var settings = {
             processData : false,
             cache : false,
             type : "PUT",
             data : JSON.stringify(data),
             headers : {'Content-Type': 'application/json'},
             success : $.proxy(this.save_notebook_success, this, start),
             error : $.proxy(this.save_notebook_error, this)
         };
         $([IPython.events]).trigger('notebook_saving.Notebook');
         var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath()+ this.notebook_name;
         $.ajax(url, settings);
     };
     
     /**
      * Success callback for saving a notebook.
      * 
      * @method save_notebook_success
      * @param {Integer} start the time when the save request started
      * @param {Object} data JSON representation of a notebook
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.save_notebook_success = function (start, data, status, xhr) {
         this.set_dirty(false);
         $([IPython.events]).trigger('notebook_saved.Notebook');
         this._update_autosave_interval(start);
         if (this._checkpoint_after_save) {
             this.create_checkpoint();
             this._checkpoint_after_save = false;
         };
     };
     
     /**
      * update the autosave interval based on how long the last save took
      * 
      * @method _update_autosave_interval
      * @param {Integer} timestamp when the save request started
      */
     Notebook.prototype._update_autosave_interval = function (start) {
         var duration = (new Date().getTime() - start);
         if (this.autosave_interval) {
             // new save interval: higher of 10x save duration or parameter (default 30 seconds)
             var interval = Math.max(10 * duration, this.minimum_autosave_interval);
             // round to 10 seconds, otherwise we will be setting a new interval too often
             interval = 10000 * Math.round(interval / 10000);
             // set new interval, if it's changed
             if (interval != this.autosave_interval) {
                 this.set_autosave_interval(interval);
             }
         }
     };
     
     /**
      * Failure callback for saving a notebook.
      * 
      * @method save_notebook_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.save_notebook_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('notebook_save_failed.Notebook');
     };
 
 
     Notebook.prototype.notebook_rename = function (new_name) {
         var that = this;
         var name = {'notebook_name': new_name};
         var settings = {
             processData : false,
             cache : false,
             type : "PATCH",
             data : JSON.stringify(name),
             dataType: "json",
             headers : {'Content-Type': 'application/json'},
             success : $.proxy(that.rename_success, this)
         };
         $([IPython.events]).trigger('notebook_rename.Notebook');
         var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath()+ this.notebook_name;
         $.ajax(url, settings);
     };
     
     
     Notebook.prototype.rename_success = function (json, status, xhr) {
         this.notebook_name = json.notebook_name
         var notebook_path = this.notebookPath() + this.notebook_name;
         this.session.notebook_rename(notebook_path);
         $([IPython.events]).trigger('notebook_renamed.Notebook');
     }
     
     /**
      * Request a notebook's data from the server.
      * 
      * @method load_notebook
      * @param {String} notebook_naem and path A notebook to load
      */
      Notebook.prototype.load_notebook = function (notebook_name, notebook_path) {
          var that = this;
          this.notebook_name = notebook_name;
          this.notebook_path = notebook_path;
          // We do the call with settings so we can set cache to false.
          var settings = {
              processData : false,
              cache : false,
              type : "GET",
              dataType : "json",
              success : $.proxy(this.load_notebook_success,this),
              error : $.proxy(this.load_notebook_error,this),
          };
          $([IPython.events]).trigger('notebook_loading.Notebook');
          var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath() + this.notebook_name;
          $.ajax(url, settings);
      };
 
     /**
      * Success callback for loading a notebook from the server.
      * 
      * Load notebook data from the JSON response.
      * 
      * @method load_notebook_success
      * @param {Object} data JSON representation of a notebook
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.load_notebook_success = function (data, status, xhr) {
         this.fromJSON(data);
         if (this.ncells() === 0) {
             this.insert_cell_below('code');
         };
         this.set_dirty(false);
         this.select(0);
         this.scroll_to_top();
         if (data.orig_nbformat !== undefined && data.nbformat !== data.orig_nbformat) {
             var msg = "This notebook has been converted from an older " +
             "notebook format (v"+data.orig_nbformat+") to the current notebook " +
             "format (v"+data.nbformat+"). The next time you save this notebook, the " +
             "newer notebook format will be used and older versions of IPython " +
             "may not be able to read it. To keep the older version, close the " +
             "notebook without saving it.";
             IPython.dialog.modal({
                 title : "Notebook converted",
                 body : msg,
                 buttons : {
                     OK : {
                         class : "btn-primary"
                     }
                 }
             });
         } else if (data.orig_nbformat_minor !== undefined && data.nbformat_minor !== data.orig_nbformat_minor) {
             var that = this;
             var orig_vs = 'v' + data.nbformat + '.' + data.orig_nbformat_minor;
             var this_vs = 'v' + data.nbformat + '.' + this.nbformat_minor;
             var msg = "This notebook is version " + orig_vs + ", but we only fully support up to " +
             this_vs + ".  You can still work with this notebook, but some features " +
             "introduced in later notebook versions may not be available."
 
             IPython.dialog.modal({
                 title : "Newer Notebook",
                 body : msg,
                 buttons : {
                     OK : {
                         class : "btn-danger"
                     }
                 }
             });
 
         }
         
         // Create the session after the notebook is completely loaded to prevent
         // code execution upon loading, which is a security risk.
         if (this.session == null) {
             this.start_session(this.notebook_path);
         }
         // load our checkpoint list
         IPython.notebook.list_checkpoints();
         $([IPython.events]).trigger('notebook_loaded.Notebook');
     };
 
     /**
      * Failure callback for loading a notebook from the server.
      * 
      * @method load_notebook_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} textStatus Description of response status
      * @param {String} errorThrow HTTP error message
      */
     Notebook.prototype.load_notebook_error = function (xhr, textStatus, errorThrow) {
         if (xhr.status === 400) {
             var msg = errorThrow;
         } else if (xhr.status === 500) {
             var msg = "An unknown error occurred while loading this notebook. " +
             "This version can load notebook formats " +
             "v" + this.nbformat + " or earlier.";
         }
         IPython.dialog.modal({
             title: "Error loading notebook",
             body : msg,
             buttons : {
                 "OK": {}
             }
         });
     }
 
     /*********************  checkpoint-related  *********************/
     
     /**
      * Save the notebook then immediately create a checkpoint.
      * 
      * @method save_checkpoint
      */
     Notebook.prototype.save_checkpoint = function () {
         this._checkpoint_after_save = true;
         this.save_notebook();
     };
     
     /**
      * Add a checkpoint for this notebook.
      * for use as a callback from checkpoint creation.
      * 
      * @method add_checkpoint
      */
     Notebook.prototype.add_checkpoint = function (checkpoint) {
         var found = false;
         for (var i = 0; i < this.checkpoints.length; i++) {
             var existing = this.checkpoints[i];
             if (existing.checkpoint_id == checkpoint.checkpoint_id) {
                 found = true;
                 this.checkpoints[i] = checkpoint;
                 break;
             }
         }
         if (!found) {
             this.checkpoints.push(checkpoint);
         }
         this.last_checkpoint = this.checkpoints[this.checkpoints.length - 1];
     };
     
     /**
      * List checkpoints for this notebook.
      * 
      * @method list_checkpoints
      */
      Notebook.prototype.list_checkpoints = function () {
          var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath() + this.notebook_name + '/checkpoints';
          $.get(url).done(
              $.proxy(this.list_checkpoints_success, this)
          ).fail(
              $.proxy(this.list_checkpoints_error, this)
          );
      };
 
     /**
      * Success callback for listing checkpoints.
      * 
      * @method list_checkpoint_success
      * @param {Object} data JSON representation of a checkpoint
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.list_checkpoints_success = function (data, status, xhr) {
         var data = $.parseJSON(data);
         this.checkpoints = data;
         if (data.length) {
             this.last_checkpoint = data[data.length - 1];
         } else {
             this.last_checkpoint = null;
         }
         $([IPython.events]).trigger('checkpoints_listed.Notebook', [data]);
     };
 
     /**
      * Failure callback for listing a checkpoint.
      * 
      * @method list_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.list_checkpoints_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('list_checkpoints_failed.Notebook');
     };
     
     /**
      * Create a checkpoint of this notebook on the server from the most recent save.
      * 
      * @method create_checkpoint
      */
      Notebook.prototype.create_checkpoint = function () {
          var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath() + this.notebook_name + '/checkpoints';
          $.post(url).done(
              $.proxy(this.create_checkpoint_success, this)
          ).fail(
              $.proxy(this.create_checkpoint_error, this)
          );
      };
 
     /**
      * Success callback for creating a checkpoint.
      * 
      * @method create_checkpoint_success
      * @param {Object} data JSON representation of a checkpoint
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.create_checkpoint_success = function (data, status, xhr) {
         var data = $.parseJSON(data);
         this.add_checkpoint(data);
         $([IPython.events]).trigger('checkpoint_created.Notebook', data);
     };
 
     /**
      * Failure callback for creating a checkpoint.
      * 
      * @method create_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.create_checkpoint_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('checkpoint_failed.Notebook');
     };
     
     Notebook.prototype.restore_checkpoint_dialog = function (checkpoint) {
         var that = this;
         var checkpoint = checkpoint || this.last_checkpoint;
         if ( ! checkpoint ) {
             console.log("restore dialog, but no checkpoint to restore to!");
             return;
         }
         var body = $('<div/>').append(
             $('<p/>').addClass("p-space").text(
                 "Are you sure you want to revert the notebook to " +
                 "the latest checkpoint?"
             ).append(
                 $("<strong/>").text(
                     " This cannot be undone."
                 )
             )
         ).append(
             $('<p/>').addClass("p-space").text("The checkpoint was last updated at:")
         ).append(
             $('<p/>').addClass("p-space").text(
                 Date(checkpoint.last_modified)
             ).css("text-align", "center")
         );
         
         IPython.dialog.modal({
             title : "Revert notebook to checkpoint",
             body : body,
             buttons : {
                 Revert : {
                     class : "btn-danger",
                     click : function () {
                         that.restore_checkpoint(checkpoint.checkpoint_id);
                     }
                 },
                 Cancel : {}
                 }
         });
     }
     
     /**
      * Restore the notebook to a checkpoint state.
      * 
      * @method restore_checkpoint
      * @param {String} checkpoint ID
      */
     Notebook.prototype.restore_checkpoint = function (checkpoint) {
 <<<<<<< HEAD
         $([IPython.events]).trigger('checkpoint_restoring.Notebook', checkpoint);
         if (this.notebook_path != "") {
             var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebook_path + this.notebook_name + '/checkpoints/' + checkpoint;
         }
         else {
             var url = this.baseProjectUrl() + 'api/notebooks/' +this.notebook_name + '/checkpoints/' + checkpoint;
         }
 =======
         $([IPython.events]).trigger('notebook_restoring.Notebook', checkpoint);
         var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath() + this.notebook_name + '/checkpoints/' + checkpoint;
 >>>>>>> fixing path redirects, cleaning path logic
         $.post(url).done(
             $.proxy(this.restore_checkpoint_success, this)
         ).fail(
             $.proxy(this.restore_checkpoint_error, this)
         );
     };
     
     /**
      * Success callback for restoring a notebook to a checkpoint.
      * 
      * @method restore_checkpoint_success
      * @param {Object} data (ignored, should be empty)
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.restore_checkpoint_success = function (data, status, xhr) {
         $([IPython.events]).trigger('checkpoint_restored.Notebook');
         this.load_notebook(this.notebook_name, this.notebook_path);
     };
 
     /**
      * Failure callback for restoring a notebook to a checkpoint.
      * 
      * @method restore_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.restore_checkpoint_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('checkpoint_restore_failed.Notebook');
     };
     
     /**
      * Delete a notebook checkpoint.
      * 
      * @method delete_checkpoint
      * @param {String} checkpoint ID
      */
     Notebook.prototype.delete_checkpoint = function (checkpoint) {
         $([IPython.events]).trigger('notebook_restoring.Notebook', checkpoint);
         var url = this.baseProjectUrl() + 'api/notebooks/' + this.notebookPath() + this.notebook_name + '/checkpoints/' + checkpoint;
         $.ajax(url, {
             type: 'DELETE',
             success: $.proxy(this.delete_checkpoint_success, this),
             error: $.proxy(this.delete_notebook_error,this)
         });
     };
     
     /**
      * Success callback for deleting a notebook checkpoint
      * 
      * @method delete_checkpoint_success
      * @param {Object} data (ignored, should be empty)
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.delete_checkpoint_success = function (data, status, xhr) {
         $([IPython.events]).trigger('checkpoint_deleted.Notebook', data);
         this.load_notebook(this.notebook_name, this.notebook_path);
     };
 
     /**
      * Failure callback for deleting a notebook checkpoint.
      * 
      * @method delete_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.delete_checkpoint_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('checkpoint_delete_failed.Notebook');
     };
 
 
     IPython.Notebook = Notebook;
 
 
     return IPython;
 
 }(IPython));
 

IPython/html/static/services/sessions/js/session.js

@@ -1,105 +1,97 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008-2011  The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // Notebook
 //============================================================================
 
 var IPython = (function (IPython) {
     
     var Session = function(notebook_path, Notebook){
         this.kernel = null;
         this.kernel_id = null;
         this.session_id = null;
         this.notebook_path = notebook_path;
         this.notebook = Notebook;
         this._baseProjectUrl = Notebook.baseProjectUrl() 
     };
     
     Session.prototype.start = function(){
         var that = this
         var qs = $.param({notebook_path:this.notebook_path});
         var url = '/api/sessions' + '?' + qs;
         $.post(url, 
             $.proxy(this.start_kernel, that),
             'json'
         );
     };
     
     Session.prototype.notebook_rename = function (notebook_path) {
         this.notebook_path = notebook_path;
         console.log("TEST");
         var settings = {
             processData : false,
             cache : false,
             type : "PATCH",
             data: notebook_path,
             dataType : "json",
         };
         var url = this._baseProjectUrl + 'api/sessions/' + this.session_id;
         $.ajax(url, settings);
     }
     
     
     Session.prototype.delete_session = function() {
         var settings = {
             processData : false,
             cache : false,
             type : "DELETE",
             dataType : "json",
         };
         var url = this._baseProjectUrl + 'api/sessions/' + this.session_id;
         $.ajax(url, settings);
     };
     
     // Kernel related things
     /**
      * Start a new kernel and set it on each code cell.
      * 
      * @method start_kernel
      */
     Session.prototype.start_kernel = function (json) {
         this.session_id = json.session_id;
         this.kernel_content = json.kernel;
         var base_url = $('body').data('baseKernelUrl') + "api/kernels";
         this.kernel = new IPython.Kernel(base_url, this.session_id);
         // Now that the kernel has been created, tell the CodeCells about it.
-        this.kernel._kernel_started(this.kernel_content)
-        var ncells = this.notebook.ncells();
-        for (var i=0; i<ncells; i++) {
-            var cell = this.notebook.get_cell(i);
-            if (cell instanceof IPython.CodeCell) {
-                cell.set_kernel(this.kernel)
-            };
-        };
-        
+        this.kernel._kernel_started(this.kernel_content);
     };
     
     /**
      * Prompt the user to restart the IPython kernel.
      * 
      * @method restart_kernel
      */
     Session.prototype.restart_kernel = function () {
         this.kernel.restart();
     };
     
     Session.prototype.interrupt_kernel = function() {
         this.kernel.interrupt();
     };
     
 
     Session.prototype.kill_kernel = function() {
         this.kernel.kill();        
     };
     
     IPython.Session = Session;
 
 
     return IPython;
 
 }(IPython));