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1 .. _nbformat:
1 .. _nbformat:
2
2
3 ===========================
3 ===========================
4 The Jupyter Notebook Format
4 The Jupyter Notebook Format
5 ===========================
5 ===========================
6
6
7 Introduction
7 Introduction
8 ============
8 ============
9
9
10 Jupyter (nΓ©e IPython) notebook files are simple JSON documents,
10 Jupyter (nΓ©e IPython) notebook files are simple JSON documents,
11 containing text, source code, rich media output, and metadata.
11 containing text, source code, rich media output, and metadata.
12 each segment of the document is stored in a cell.
12 each segment of the document is stored in a cell.
13
13
14 Some general points about the notebook format:
14 Some general points about the notebook format:
15
15
16 .. note::
16 .. note::
17
17
18 *All* metadata fields are optional.
18 *All* metadata fields are optional.
19 While the type and values of some metadata are defined,
19 While the type and values of some metadata are defined,
20 no metadata values are required to be defined.
20 no metadata values are required to be defined.
21
21
22
22
23 Top-level structure
23 Top-level structure
24 ===================
24 ===================
25
25
26 At the highest level, a Jupyter notebook is a dictionary with a few keys:
26 At the highest level, a Jupyter notebook is a dictionary with a few keys:
27
27
28 - metadata (dict)
28 - metadata (dict)
29 - nbformat (int)
29 - nbformat (int)
30 - nbformat_minor (int)
30 - nbformat_minor (int)
31 - cells (list)
31 - cells (list)
32
32
33 .. sourcecode:: python
33 .. sourcecode:: python
34
34
35 {
35 {
36 "metadata" : {
36 "metadata" : {
37 "signature": "hex-digest", # used for authenticating unsafe outputs on load
37 "signature": "hex-digest", # used for authenticating unsafe outputs on load
38 "kernel_info": {
38 "kernel_info": {
39 # if kernel_info is defined, its name and language fields are required.
39 # if kernel_info is defined, its name and language fields are required.
40 "name" : "the name of the kernel",
40 "name" : "the name of the kernel",
41 "language" : "the programming language of the kernel",
41 "language" : "the programming language of the kernel",
42 "codemirror_mode": "The name of the codemirror mode to use [optional]"
42 "codemirror_mode": "The name of the codemirror mode to use [optional]"
43 },
43 },
44 },
44 },
45 "nbformat": 4,
45 "nbformat": 4,
46 "nbformat_minor": 0,
46 "nbformat_minor": 0,
47 "cells" : [
47 "cells" : [
48 # list of cell dictionaries, see below
48 # list of cell dictionaries, see below
49 ],
49 ],
50 }
50 }
51
51
52
52
53 Cell Types
53 Cell Types
54 ==========
54 ==========
55
55
56 There are a few basic cell types for encapsulating code and text.
56 There are a few basic cell types for encapsulating code and text.
57 All cells have the following basic structure:
57 All cells have the following basic structure:
58
58
59 .. sourcecode:: python
59 .. sourcecode:: python
60
60
61 {
61 {
62 "cell_type" : "name",
62 "cell_type" : "name",
63 "metadata" : {},
63 "metadata" : {},
64 "source" : "single string or [list, of, strings]",
64 "source" : "single string or [list, of, strings]",
65 }
65 }
66
66
67
67
68 Markdown cells
68 Markdown cells
69 --------------
69 --------------
70
70
71 Markdown cells are used for body-text, and contain markdown,
71 Markdown cells are used for body-text, and contain markdown,
72 as defined in `GitHub-flavored markdown`_, and implemented in marked_.
72 as defined in `GitHub-flavored markdown`_, and implemented in marked_.
73
73
74 .. _GitHub-flavored markdown: https://help.github.com/articles/github-flavored-markdown
74 .. _GitHub-flavored markdown: https://help.github.com/articles/github-flavored-markdown
75 .. _marked: https://github.com/chjj/marked
75 .. _marked: https://github.com/chjj/marked
76
76
77 .. sourcecode:: python
77 .. sourcecode:: python
78
78
79 {
79 {
80 "cell_type" : "markdown",
80 "cell_type" : "markdown",
81 "metadata" : {},
81 "metadata" : {},
82 "source" : ["some *markdown*"],
82 "source" : ["some *markdown*"],
83 }
83 }
84
84
85 .. versionchanged:: 4.0
85 .. versionchanged:: 4.0
86
86
87 Heading cells have been removed, in favor of simple headings in markdown.
87 Heading cells have been removed, in favor of simple headings in markdown.
88
88
89
89
90 Code cells
90 Code cells
91 ----------
91 ----------
92
92
93 Code cells are the primary content of Jupyter notebooks.
93 Code cells are the primary content of Jupyter notebooks.
94 They contain source code int e language of the document's associated kernel,
94 They contain source code int e language of the document's associated kernel,
95 and a list of outputs associated with executing.
95 and a list of outputs associated with executing.
96 They also have an execution_count, which must be an integer or ``null``.
96 They also have an execution_count, which must be an integer or ``null``.
97
97
98 .. sourcecode:: python
98 .. sourcecode:: python
99
99
100 {
100 {
101 "cell_type" : "code",
101 "cell_type" : "code",
102 "execution_count": 1, # integer or null
102 "execution_count": 1, # integer or null
103 "metadata" : {
103 "metadata" : {
104 "collapsed" : True, # whether the output of the cell is collapsed
104 "collapsed" : True, # whether the output of the cell is collapsed
105 "autoscroll": False, # any of true, false or "auto"
105 "autoscroll": False, # any of true, false or "auto"
106 },
106 },
107 "source" : ["some code"],
107 "source" : ["some code"],
108 "outputs": [{
108 "outputs": [{
109 # list of output dicts (described below)
109 # list of output dicts (described below)
110 "output_type": "stream",
110 "output_type": "stream",
111 ...
111 ...
112 }],
112 }],
113 }
113 }
114
114
115 .. versionchanged:: 4.0
115 .. versionchanged:: 4.0
116
116
117 ``input`` was renamed to ``source``, for consistency among cell types.
117 ``input`` was renamed to ``source``, for consistency among cell types.
118
118
119 .. versionchanged:: 4.0
119 .. versionchanged:: 4.0
120
120
121 ``prompt_number`` renamed to ``execution_count``
121 ``prompt_number`` renamed to ``execution_count``
122
122
123 Code cell outputs
123 Code cell outputs
124 -----------------
124 -----------------
125
125
126 A code cell can have a variety of outputs (stream data or rich mime-type output).
126 A code cell can have a variety of outputs (stream data or rich mime-type output).
127 These correspond to :ref:`messages <messaging>` produced as a result of executing the cell.
127 These correspond to :ref:`messages <messaging>` produced as a result of executing the cell.
128
128
129 All outputs have an ``output_type`` field,
129 All outputs have an ``output_type`` field,
130 which is a string defining what type of output it is.
130 which is a string defining what type of output it is.
131
131
132
132
133 stream output
133 stream output
134 *************
134 *************
135
135
136 .. sourcecode:: python
136 .. sourcecode:: python
137
137
138 {
138 {
139 "output_type" : "stream",
139 "output_type" : "stream",
140 "name" : "stdout", # or stderr
140 "name" : "stdout", # or stderr
141 "data" : ["multiline stream text"],
141 "data" : ["multiline stream text"],
142 }
142 }
143
143
144 .. versionchanged:: 4.0
144 .. versionchanged:: 4.0
145
145
146 The keys ``stream`` and ``text`` were changed to ``name`` and ``data`` to match
146 The keys ``stream`` and ``text`` were changed to ``name`` and ``data`` to match
147 the stream message specification.
147 the stream message specification.
148
148
149
149
150 display_data
150 display_data
151 ************
151 ************
152
152
153 Rich display messages (as created by ``display_data`` messages)
153 Rich display messages (as created by ``display_data`` messages)
154 contain data keyed by mime-type. All mime-type data should
154 contain data keyed by mime-type. All mime-type data should
155 The metadata of these messages may be keyed by mime-type as well.
155 The metadata of these messages may be keyed by mime-type as well.
156
156
157
157
158 .. sourcecode:: python
158 .. sourcecode:: python
159
159
160 {
160 {
161 "output_type" : "display_data",
161 "output_type" : "display_data",
162 "data" : {
162 "data" : {
163 "text/plain" : ["multiline text data"],
163 "text/plain" : ["multiline text data"],
164 "image/png": ["base64-encoded-png-data"],
164 "image/png": ["base64-encoded-png-data"],
165 "application/json": {
165 "application/json": {
166 # JSON data is included as-is
166 # JSON data is included as-is
167 "json": "data",
167 "json": "data",
168 },
168 },
169 },
169 },
170 "metadata" : {
170 "metadata" : {
171 "image/png": {
171 "image/png": {
172 "width": 640,
172 "width": 640,
173 "height": 480,
173 "height": 480,
174 },
174 },
175 },
175 },
176 }
176 }
177
177
178
178
179 .. versionchanged:: 4.0
179 .. versionchanged:: 4.0
180
180
181 ``application/json`` output is no longer double-serialized into a string.
181 ``application/json`` output is no longer double-serialized into a string.
182
182
183 .. versionchanged:: 4.0
183 .. versionchanged:: 4.0
184
184
185 mime-types are used for keys, instead of a combination of short names (``text``)
185 mime-types are used for keys, instead of a combination of short names (``text``)
186 and mime-types, and are stored in a ``data`` key, rather than the top-level.
186 and mime-types, and are stored in a ``data`` key, rather than the top-level.
187 i.e. ``output.data['image/png']`` instead of ``output.png``.
187 i.e. ``output.data['image/png']`` instead of ``output.png``.
188
188
189
189
190 execute_result
190 execute_result
191 **************
191 **************
192
192
193 Results of executing a cell (as created by ``displayhook`` in Python)
193 Results of executing a cell (as created by ``displayhook`` in Python)
194 are stored in ``execute_result`` outputs.
194 are stored in ``execute_result`` outputs.
195 `execute_result` outputs are identical to ``display_data``,
195 `execute_result` outputs are identical to ``display_data``,
196 adding only a ``prompt_number`` field, which must be an integer.
196 adding only a ``prompt_number`` field, which must be an integer.
197
197
198 .. sourcecode:: python
198 .. sourcecode:: python
199
199
200 {
200 {
201 "output_type" : "execute_result",
201 "output_type" : "execute_result",
202 "execute_result": 42,
202 "execute_result": 42,
203 "data" : {
203 "data" : {
204 "text/plain" : ["multiline text data"],
204 "text/plain" : ["multiline text data"],
205 "image/png": ["base64-encoded-png-data"],
205 "image/png": ["base64-encoded-png-data"],
206 "application/json": {
206 "application/json": {
207 # JSON data is included as-is
207 # JSON data is included as-is
208 "json": "data",
208 "json": "data",
209 },
209 },
210 },
210 },
211 "metadata" : {
211 "metadata" : {
212 "image/png": {
212 "image/png": {
213 "width": 640,
213 "width": 640,
214 "height": 480,
214 "height": 480,
215 },
215 },
216 },
216 },
217 }
217 }
218
218
219 .. versionchanged:: 4.0
219 .. versionchanged:: 4.0
220
220
221 ``pyout`` renamed to ``execute_result``
221 ``pyout`` renamed to ``execute_result``
222
222
223 .. versionchanged:: 4.0
223 .. versionchanged:: 4.0
224
224
225 ``prompt_number`` renamed to ``execution_count``
225 ``prompt_number`` renamed to ``execution_count``
226
226
227
227
228 error
228 error
229 *****
229 *****
230
230
231 Failed execution may show a traceback
231 Failed execution may show a traceback
232
232
233 .. sourcecode:: python
233 .. sourcecode:: python
234
234
235 {
235 {
236 'ename' : str, # Exception name, as a string
236 'ename' : str, # Exception name, as a string
237 'evalue' : str, # Exception value, as a string
237 'evalue' : str, # Exception value, as a string
238
238
239 # The traceback will contain a list of frames,
239 # The traceback will contain a list of frames,
240 # represented each as a string.
240 # represented each as a string.
241 'traceback' : list,
241 'traceback' : list,
242 }
242 }
243
243
244 .. versionchanged:: 4.0
244 .. versionchanged:: 4.0
245
245
246 ``pyerr`` renamed to ``error``
246 ``pyerr`` renamed to ``error``
247
247
248
248
249 .. _raw nbconvert cells:
250
249 Raw NBConvert cells
251 Raw NBConvert cells
250 -------------------
252 -------------------
251
253
252 A raw cell is defined as content that should be included *unmodified* in :ref:`nbconvert <nbconvert>` output.
254 A raw cell is defined as content that should be included *unmodified* in :ref:`nbconvert <nbconvert>` output.
253 For example, this cell could include raw LaTeX for nbconvert to pdf via latex,
255 For example, this cell could include raw LaTeX for nbconvert to pdf via latex,
254 or restructured text for use in Sphinx documentation.
256 or restructured text for use in Sphinx documentation.
255
257
256 The notebook authoring environment does not render raw cells.
258 The notebook authoring environment does not render raw cells.
257
259
258 The only logic in a raw cell is the `format` metadata field.
260 The only logic in a raw cell is the `format` metadata field.
259 If defined, it specifies which nbconvert output format is the intended target
261 If defined, it specifies which nbconvert output format is the intended target
260 for the raw cell. When outputting to any other format,
262 for the raw cell. When outputting to any other format,
261 the raw cell's contents will be excluded.
263 the raw cell's contents will be excluded.
262 In the default case when this value is undefined,
264 In the default case when this value is undefined,
263 a raw cell's contents will be included in any nbconvert output,
265 a raw cell's contents will be included in any nbconvert output,
264 regardless of format.
266 regardless of format.
265
267
266 .. sourcecode:: python
268 .. sourcecode:: python
267
269
268 {
270 {
269 "cell_type" : "raw",
271 "cell_type" : "raw",
270 "metadata" : {
272 "metadata" : {
271 # the mime-type of the target nbconvert format.
273 # the mime-type of the target nbconvert format.
272 # nbconvert to formats other than this will exclude this cell.
274 # nbconvert to formats other than this will exclude this cell.
273 "format" : "mime/type"
275 "format" : "mime/type"
274 },
276 },
275 "source" : ["some nbformat mime-type data"]
277 "source" : ["some nbformat mime-type data"]
276 }
278 }
279
280 Metadata
281 ========
282
283 Metadata is a place that you can put arbitrary JSONable information about
284 your notebook, cell, or output. Because it is a shared namespace,
285 any custom metadata should use a sufficiently unique namespace,
286 such as `metadata.kaylees_md.foo = "bar"`.
287
288 Metadata fields officially defined for Jupyter notebooks are listed here:
289
290 Notebook metadata
291 -----------------
292
293 The following metadata keys are defined at the notebook level:
294
295 =========== =============== ==============
296 Key Value Interpretation
297 =========== =============== ==============
298 kernelspec dict A kernel specification. More detail :ref:`here <kernelspecs>`
299 signature str A hashed signature of the notebook
300 =========== =============== ==============
301
302
303 Cell metadata
304 -------------
305
306 The following metadata keys are defined at the cell level:
307
308 =========== =============== ==============
309 Key Value Interpretation
310 =========== =============== ==============
311 collapsed bool Whether the cell's output container should be collapsed
312 autoscroll bool or 'auto' Whether the cell's output is scrolled, unscrolled, or autoscrolled
313 deletable bool If False, prevent deletion of the cell
314 format 'mime/type' The mime-type of a :ref:`Raw NBConvert Cell <raw nbconvert cells>`
315 name str A name for the cell. Should be unique
316 tags list of str A list of string tags on the cell. Commas are not allowed in a tag
317 =========== =============== ==============
318
319 Output metadata
320 ---------------
321
322 The following metadata keys are defined for code cell outputs:
323
324 =========== =============== ==============
325 Key Value Interpretation
326 =========== =============== ==============
327 isolated bool Whether the output should be isolated into an IFrame
328 =========== =============== ==============
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