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@@ -1,238 +1,238 b'' | |||||
1 | """The official API for working with notebooks in the current format version. |
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1 | """The official API for working with notebooks in the current format version. | |
2 |
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2 | |||
3 | Authors: |
|
3 | Authors: | |
4 |
|
4 | |||
5 | * Brian Granger |
|
5 | * Brian Granger | |
6 | * Jonathan Frederic |
|
6 | * Jonathan Frederic | |
7 | """ |
|
7 | """ | |
8 |
|
8 | |||
9 | #----------------------------------------------------------------------------- |
|
9 | #----------------------------------------------------------------------------- | |
10 | # Copyright (C) 2008-2011 The IPython Development Team |
|
10 | # Copyright (C) 2008-2011 The IPython Development Team | |
11 | # |
|
11 | # | |
12 | # Distributed under the terms of the BSD License. The full license is in |
|
12 | # Distributed under the terms of the BSD License. The full license is in | |
13 | # the file COPYING, distributed as part of this software. |
|
13 | # the file COPYING, distributed as part of this software. | |
14 | #----------------------------------------------------------------------------- |
|
14 | #----------------------------------------------------------------------------- | |
15 |
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15 | |||
16 | #----------------------------------------------------------------------------- |
|
16 | #----------------------------------------------------------------------------- | |
17 | # Imports |
|
17 | # Imports | |
18 | #----------------------------------------------------------------------------- |
|
18 | #----------------------------------------------------------------------------- | |
19 |
|
19 | |||
20 | from __future__ import print_function |
|
20 | from __future__ import print_function | |
21 |
|
21 | |||
22 | from xml.etree import ElementTree as ET |
|
22 | from xml.etree import ElementTree as ET | |
23 | import re |
|
23 | import re | |
24 |
|
24 | |||
25 | from IPython.utils.py3compat import unicode_type |
|
25 | from IPython.utils.py3compat import unicode_type | |
26 |
|
26 | |||
27 | from IPython.nbformat.v3 import ( |
|
27 | from IPython.nbformat.v3 import ( | |
28 | NotebookNode, |
|
28 | NotebookNode, | |
29 | new_code_cell, new_text_cell, new_notebook, new_output, new_worksheet, |
|
29 | new_code_cell, new_text_cell, new_notebook, new_output, new_worksheet, | |
30 | parse_filename, new_metadata, new_author, new_heading_cell, nbformat, |
|
30 | parse_filename, new_metadata, new_author, new_heading_cell, nbformat, | |
31 | nbformat_minor, nbformat_schema, to_notebook_json |
|
31 | nbformat_minor, nbformat_schema, to_notebook_json | |
32 | ) |
|
32 | ) | |
33 | from IPython.nbformat import v3 as _v_latest |
|
33 | from IPython.nbformat import v3 as _v_latest | |
34 |
|
34 | |||
35 | from .reader import reads as reader_reads |
|
35 | from .reader import reads as reader_reads | |
36 | from .reader import versions |
|
36 | from .reader import versions | |
37 | from .convert import convert |
|
37 | from .convert import convert | |
38 | from .validator import validate |
|
38 | from .validator import validate | |
39 |
|
39 | |||
40 | import logging |
|
40 | import logging | |
41 | logger = logging.getLogger('NotebookApp') |
|
41 | logger = logging.getLogger('NotebookApp') | |
42 |
|
42 | |||
43 | #----------------------------------------------------------------------------- |
|
43 | #----------------------------------------------------------------------------- | |
44 | # Code |
|
44 | # Code | |
45 | #----------------------------------------------------------------------------- |
|
45 | #----------------------------------------------------------------------------- | |
46 |
|
46 | |||
47 | current_nbformat = nbformat |
|
47 | current_nbformat = nbformat | |
48 | current_nbformat_minor = nbformat_minor |
|
48 | current_nbformat_minor = nbformat_minor | |
49 | current_nbformat_module = _v_latest.__name__ |
|
49 | current_nbformat_module = _v_latest.__name__ | |
50 |
|
50 | |||
51 |
|
51 | |||
52 | def docstring_nbformat_mod(func): |
|
52 | def docstring_nbformat_mod(func): | |
53 | """Decorator for docstrings referring to classes/functions accessed through |
|
53 | """Decorator for docstrings referring to classes/functions accessed through | |
54 | nbformat.current. |
|
54 | nbformat.current. | |
55 |
|
55 | |||
56 | Put {nbformat_mod} in the docstring in place of 'IPython.nbformat.v3'. |
|
56 | Put {nbformat_mod} in the docstring in place of 'IPython.nbformat.v3'. | |
57 | """ |
|
57 | """ | |
58 | func.__doc__ = func.__doc__.format(nbformat_mod=current_nbformat_module) |
|
58 | func.__doc__ = func.__doc__.format(nbformat_mod=current_nbformat_module) | |
59 | return func |
|
59 | return func | |
60 |
|
60 | |||
61 |
|
61 | |||
62 | class NBFormatError(ValueError): |
|
62 | class NBFormatError(ValueError): | |
63 | pass |
|
63 | pass | |
64 |
|
64 | |||
65 |
|
65 | |||
66 | def parse_py(s, **kwargs): |
|
66 | def parse_py(s, **kwargs): | |
67 | """Parse a string into a (nbformat, string) tuple.""" |
|
67 | """Parse a string into a (nbformat, string) tuple.""" | |
68 | nbf = current_nbformat |
|
68 | nbf = current_nbformat | |
69 | nbm = current_nbformat_minor |
|
69 | nbm = current_nbformat_minor | |
70 |
|
70 | |||
71 | pattern = r'# <nbformat>(?P<nbformat>\d+[\.\d+]*)</nbformat>' |
|
71 | pattern = r'# <nbformat>(?P<nbformat>\d+[\.\d+]*)</nbformat>' | |
72 | m = re.search(pattern,s) |
|
72 | m = re.search(pattern,s) | |
73 | if m is not None: |
|
73 | if m is not None: | |
74 | digits = m.group('nbformat').split('.') |
|
74 | digits = m.group('nbformat').split('.') | |
75 | nbf = int(digits[0]) |
|
75 | nbf = int(digits[0]) | |
76 | if len(digits) > 1: |
|
76 | if len(digits) > 1: | |
77 | nbm = int(digits[1]) |
|
77 | nbm = int(digits[1]) | |
78 |
|
78 | |||
79 | return nbf, nbm, s |
|
79 | return nbf, nbm, s | |
80 |
|
80 | |||
81 |
|
81 | |||
82 | def reads_json(nbjson, **kwargs): |
|
82 | def reads_json(nbjson, **kwargs): | |
83 | """Read a JSON notebook from a string and return the NotebookNode |
|
83 | """Read a JSON notebook from a string and return the NotebookNode | |
84 | object. Report if any JSON format errors are detected. |
|
84 | object. Report if any JSON format errors are detected. | |
85 |
|
85 | |||
86 | """ |
|
86 | """ | |
87 | nb = reader_reads(nbjson, **kwargs) |
|
87 | nb = reader_reads(nbjson, **kwargs) | |
88 | nb_current = convert(nb, current_nbformat) |
|
88 | nb_current = convert(nb, current_nbformat) | |
89 |
|
|
89 | errors = validate(nb_current) | |
90 |
if |
|
90 | if len(errors) > 0: | |
91 | logger.error( |
|
91 | logger.error( | |
92 | "Notebook JSON is invalid (%d errors detected during read)", |
|
92 | "Notebook JSON is invalid (%d errors detected during read)", | |
93 |
|
|
93 | len(errors)) | |
94 | return nb_current |
|
94 | return nb_current | |
95 |
|
95 | |||
96 |
|
96 | |||
97 | def writes_json(nb, **kwargs): |
|
97 | def writes_json(nb, **kwargs): | |
98 | """Take a NotebookNode object and write out a JSON string. Report if |
|
98 | """Take a NotebookNode object and write out a JSON string. Report if | |
99 | any JSON format errors are detected. |
|
99 | any JSON format errors are detected. | |
100 |
|
100 | |||
101 | """ |
|
101 | """ | |
102 |
|
|
102 | errors = validate(nb) | |
103 |
if |
|
103 | if len(errors) > 0: | |
104 | logger.error( |
|
104 | logger.error( | |
105 | "Notebook JSON is invalid (%d errors detected during write)", |
|
105 | "Notebook JSON is invalid (%d errors detected during write)", | |
106 |
|
|
106 | len(errors)) | |
107 | nbjson = versions[current_nbformat].writes_json(nb, **kwargs) |
|
107 | nbjson = versions[current_nbformat].writes_json(nb, **kwargs) | |
108 | return nbjson |
|
108 | return nbjson | |
109 |
|
109 | |||
110 |
|
110 | |||
111 | def reads_py(s, **kwargs): |
|
111 | def reads_py(s, **kwargs): | |
112 | """Read a .py notebook from a string and return the NotebookNode object.""" |
|
112 | """Read a .py notebook from a string and return the NotebookNode object.""" | |
113 | nbf, nbm, s = parse_py(s, **kwargs) |
|
113 | nbf, nbm, s = parse_py(s, **kwargs) | |
114 | if nbf in (2, 3): |
|
114 | if nbf in (2, 3): | |
115 | nb = versions[nbf].to_notebook_py(s, **kwargs) |
|
115 | nb = versions[nbf].to_notebook_py(s, **kwargs) | |
116 | else: |
|
116 | else: | |
117 | raise NBFormatError('Unsupported PY nbformat version: %i' % nbf) |
|
117 | raise NBFormatError('Unsupported PY nbformat version: %i' % nbf) | |
118 | return nb |
|
118 | return nb | |
119 |
|
119 | |||
120 |
|
120 | |||
121 | def writes_py(nb, **kwargs): |
|
121 | def writes_py(nb, **kwargs): | |
122 | # nbformat 3 is the latest format that supports py |
|
122 | # nbformat 3 is the latest format that supports py | |
123 | return versions[3].writes_py(nb, **kwargs) |
|
123 | return versions[3].writes_py(nb, **kwargs) | |
124 |
|
124 | |||
125 |
|
125 | |||
126 | # High level API |
|
126 | # High level API | |
127 |
|
127 | |||
128 |
|
128 | |||
129 | def reads(s, format, **kwargs): |
|
129 | def reads(s, format, **kwargs): | |
130 | """Read a notebook from a string and return the NotebookNode object. |
|
130 | """Read a notebook from a string and return the NotebookNode object. | |
131 |
|
131 | |||
132 | This function properly handles notebooks of any version. The notebook |
|
132 | This function properly handles notebooks of any version. The notebook | |
133 | returned will always be in the current version's format. |
|
133 | returned will always be in the current version's format. | |
134 |
|
134 | |||
135 | Parameters |
|
135 | Parameters | |
136 | ---------- |
|
136 | ---------- | |
137 | s : unicode |
|
137 | s : unicode | |
138 | The raw unicode string to read the notebook from. |
|
138 | The raw unicode string to read the notebook from. | |
139 | format : (u'json', u'ipynb', u'py') |
|
139 | format : (u'json', u'ipynb', u'py') | |
140 | The format that the string is in. |
|
140 | The format that the string is in. | |
141 |
|
141 | |||
142 | Returns |
|
142 | Returns | |
143 | ------- |
|
143 | ------- | |
144 | nb : NotebookNode |
|
144 | nb : NotebookNode | |
145 | The notebook that was read. |
|
145 | The notebook that was read. | |
146 | """ |
|
146 | """ | |
147 | format = unicode_type(format) |
|
147 | format = unicode_type(format) | |
148 | if format == u'json' or format == u'ipynb': |
|
148 | if format == u'json' or format == u'ipynb': | |
149 | return reads_json(s, **kwargs) |
|
149 | return reads_json(s, **kwargs) | |
150 | elif format == u'py': |
|
150 | elif format == u'py': | |
151 | return reads_py(s, **kwargs) |
|
151 | return reads_py(s, **kwargs) | |
152 | else: |
|
152 | else: | |
153 | raise NBFormatError('Unsupported format: %s' % format) |
|
153 | raise NBFormatError('Unsupported format: %s' % format) | |
154 |
|
154 | |||
155 |
|
155 | |||
156 | def writes(nb, format, **kwargs): |
|
156 | def writes(nb, format, **kwargs): | |
157 | """Write a notebook to a string in a given format in the current nbformat version. |
|
157 | """Write a notebook to a string in a given format in the current nbformat version. | |
158 |
|
158 | |||
159 | This function always writes the notebook in the current nbformat version. |
|
159 | This function always writes the notebook in the current nbformat version. | |
160 |
|
160 | |||
161 | Parameters |
|
161 | Parameters | |
162 | ---------- |
|
162 | ---------- | |
163 | nb : NotebookNode |
|
163 | nb : NotebookNode | |
164 | The notebook to write. |
|
164 | The notebook to write. | |
165 | format : (u'json', u'ipynb', u'py') |
|
165 | format : (u'json', u'ipynb', u'py') | |
166 | The format to write the notebook in. |
|
166 | The format to write the notebook in. | |
167 |
|
167 | |||
168 | Returns |
|
168 | Returns | |
169 | ------- |
|
169 | ------- | |
170 | s : unicode |
|
170 | s : unicode | |
171 | The notebook string. |
|
171 | The notebook string. | |
172 | """ |
|
172 | """ | |
173 | format = unicode_type(format) |
|
173 | format = unicode_type(format) | |
174 | if format == u'json' or format == u'ipynb': |
|
174 | if format == u'json' or format == u'ipynb': | |
175 | return writes_json(nb, **kwargs) |
|
175 | return writes_json(nb, **kwargs) | |
176 | elif format == u'py': |
|
176 | elif format == u'py': | |
177 | return writes_py(nb, **kwargs) |
|
177 | return writes_py(nb, **kwargs) | |
178 | else: |
|
178 | else: | |
179 | raise NBFormatError('Unsupported format: %s' % format) |
|
179 | raise NBFormatError('Unsupported format: %s' % format) | |
180 |
|
180 | |||
181 |
|
181 | |||
182 | def read(fp, format, **kwargs): |
|
182 | def read(fp, format, **kwargs): | |
183 | """Read a notebook from a file and return the NotebookNode object. |
|
183 | """Read a notebook from a file and return the NotebookNode object. | |
184 |
|
184 | |||
185 | This function properly handles notebooks of any version. The notebook |
|
185 | This function properly handles notebooks of any version. The notebook | |
186 | returned will always be in the current version's format. |
|
186 | returned will always be in the current version's format. | |
187 |
|
187 | |||
188 | Parameters |
|
188 | Parameters | |
189 | ---------- |
|
189 | ---------- | |
190 | fp : file |
|
190 | fp : file | |
191 | Any file-like object with a read method. |
|
191 | Any file-like object with a read method. | |
192 | format : (u'json', u'ipynb', u'py') |
|
192 | format : (u'json', u'ipynb', u'py') | |
193 | The format that the string is in. |
|
193 | The format that the string is in. | |
194 |
|
194 | |||
195 | Returns |
|
195 | Returns | |
196 | ------- |
|
196 | ------- | |
197 | nb : NotebookNode |
|
197 | nb : NotebookNode | |
198 | The notebook that was read. |
|
198 | The notebook that was read. | |
199 | """ |
|
199 | """ | |
200 | return reads(fp.read(), format, **kwargs) |
|
200 | return reads(fp.read(), format, **kwargs) | |
201 |
|
201 | |||
202 |
|
202 | |||
203 | def write(nb, fp, format, **kwargs): |
|
203 | def write(nb, fp, format, **kwargs): | |
204 | """Write a notebook to a file in a given format in the current nbformat version. |
|
204 | """Write a notebook to a file in a given format in the current nbformat version. | |
205 |
|
205 | |||
206 | This function always writes the notebook in the current nbformat version. |
|
206 | This function always writes the notebook in the current nbformat version. | |
207 |
|
207 | |||
208 | Parameters |
|
208 | Parameters | |
209 | ---------- |
|
209 | ---------- | |
210 | nb : NotebookNode |
|
210 | nb : NotebookNode | |
211 | The notebook to write. |
|
211 | The notebook to write. | |
212 | fp : file |
|
212 | fp : file | |
213 | Any file-like object with a write method. |
|
213 | Any file-like object with a write method. | |
214 | format : (u'json', u'ipynb', u'py') |
|
214 | format : (u'json', u'ipynb', u'py') | |
215 | The format to write the notebook in. |
|
215 | The format to write the notebook in. | |
216 |
|
216 | |||
217 | Returns |
|
217 | Returns | |
218 | ------- |
|
218 | ------- | |
219 | s : unicode |
|
219 | s : unicode | |
220 | The notebook string. |
|
220 | The notebook string. | |
221 | """ |
|
221 | """ | |
222 | return fp.write(writes(nb, format, **kwargs)) |
|
222 | return fp.write(writes(nb, format, **kwargs)) | |
223 |
|
223 | |||
224 | def _convert_to_metadata(): |
|
224 | def _convert_to_metadata(): | |
225 | """Convert to a notebook having notebook metadata.""" |
|
225 | """Convert to a notebook having notebook metadata.""" | |
226 | import glob |
|
226 | import glob | |
227 | for fname in glob.glob('*.ipynb'): |
|
227 | for fname in glob.glob('*.ipynb'): | |
228 | print('Converting file:',fname) |
|
228 | print('Converting file:',fname) | |
229 | with open(fname,'r') as f: |
|
229 | with open(fname,'r') as f: | |
230 | nb = read(f,u'json') |
|
230 | nb = read(f,u'json') | |
231 | md = new_metadata() |
|
231 | md = new_metadata() | |
232 | if u'name' in nb: |
|
232 | if u'name' in nb: | |
233 | md.name = nb.name |
|
233 | md.name = nb.name | |
234 | del nb[u'name'] |
|
234 | del nb[u'name'] | |
235 | nb.metadata = md |
|
235 | nb.metadata = md | |
236 | with open(fname,'w') as f: |
|
236 | with open(fname,'w') as f: | |
237 | write(nb, f, u'json') |
|
237 | write(nb, f, u'json') | |
238 |
|
238 |
@@ -1,97 +1,91 b'' | |||||
1 | from __future__ import print_function |
|
1 | from __future__ import print_function | |
2 | import json |
|
2 | import json | |
3 | import os |
|
3 | import os | |
4 |
|
4 | |||
5 | from IPython.external.jsonschema import Draft3Validator, SchemaError |
|
5 | from IPython.external.jsonschema import Draft3Validator, SchemaError | |
6 | import IPython.external.jsonpointer as jsonpointer |
|
6 | import IPython.external.jsonpointer as jsonpointer | |
7 | from IPython.utils.py3compat import iteritems |
|
7 | from IPython.utils.py3compat import iteritems | |
8 |
|
8 | |||
9 |
|
9 | |||
10 | from .current import nbformat, nbformat_schema |
|
10 | from .current import nbformat, nbformat_schema | |
11 | schema_path = os.path.join( |
|
11 | schema_path = os.path.join( | |
12 | os.path.dirname(__file__), "v%d" % nbformat, nbformat_schema) |
|
12 | os.path.dirname(__file__), "v%d" % nbformat, nbformat_schema) | |
13 |
|
13 | |||
14 |
|
14 | |||
15 |
def isvalid(nbjson |
|
15 | def isvalid(nbjson): | |
16 | """Checks whether the given notebook JSON conforms to the current |
|
16 | """Checks whether the given notebook JSON conforms to the current | |
17 | notebook format schema. Returns True if the JSON is valid, and |
|
17 | notebook format schema. Returns True if the JSON is valid, and | |
18 | False otherwise. |
|
18 | False otherwise. | |
19 |
|
19 | |||
20 | If `verbose` is set, then print out each error that is detected. |
|
20 | To see the individual errors that were encountered, please use the | |
|
21 | `validate` function instead. | |||
21 |
|
22 | |||
22 | """ |
|
23 | """ | |
23 |
|
24 | |||
24 |
errors = validate(nbjson |
|
25 | errors = validate(nbjson) | |
25 | return errors == 0 |
|
26 | return errors == 0 | |
26 |
|
27 | |||
27 |
|
28 | |||
28 |
def validate(nbjson |
|
29 | def validate(nbjson): | |
29 | """Checks whether the given notebook JSON conforms to the current |
|
30 | """Checks whether the given notebook JSON conforms to the current | |
30 |
notebook format schema, and returns the |
|
31 | notebook format schema, and returns the list of errors. | |
31 |
|
||||
32 | If `verbose` is set, then print out each error that is detected. |
|
|||
33 |
|
32 | |||
34 | """ |
|
33 | """ | |
35 |
|
34 | |||
36 | # load the schema file |
|
35 | # load the schema file | |
37 | with open(schema_path, 'r') as fh: |
|
36 | with open(schema_path, 'r') as fh: | |
38 | schema_json = json.load(fh) |
|
37 | schema_json = json.load(fh) | |
39 |
|
38 | |||
40 | # resolve internal references |
|
39 | # resolve internal references | |
41 | v3schema = resolve_ref(schema_json) |
|
40 | v3schema = resolve_ref(schema_json) | |
42 | v3schema = jsonpointer.resolve_pointer(v3schema, '/notebook') |
|
41 | v3schema = jsonpointer.resolve_pointer(v3schema, '/notebook') | |
43 |
|
42 | |||
44 | # count how many errors there are |
|
43 | # count how many errors there are | |
45 | errors = 0 |
|
|||
46 | v = Draft3Validator(v3schema) |
|
44 | v = Draft3Validator(v3schema) | |
47 |
for e |
|
45 | errors = [e for e in v.iter_errors(nbjson)] | |
48 | errors = errors + 1 |
|
|||
49 | if verbose: |
|
|||
50 | print(error) |
|
|||
51 |
|
||||
52 | return errors |
|
46 | return errors | |
53 |
|
47 | |||
54 |
|
48 | |||
55 | def resolve_ref(json, schema=None): |
|
49 | def resolve_ref(json, schema=None): | |
56 | """Resolve internal references within the given JSON. This essentially |
|
50 | """Resolve internal references within the given JSON. This essentially | |
57 | means that dictionaries of this form: |
|
51 | means that dictionaries of this form: | |
58 |
|
52 | |||
59 | {"$ref": "/somepointer"} |
|
53 | {"$ref": "/somepointer"} | |
60 |
|
54 | |||
61 | will be replaced with the resolved reference to `/somepointer`. |
|
55 | will be replaced with the resolved reference to `/somepointer`. | |
62 | This only supports local reference to the same JSON file. |
|
56 | This only supports local reference to the same JSON file. | |
63 |
|
57 | |||
64 | """ |
|
58 | """ | |
65 |
|
59 | |||
66 | if not schema: |
|
60 | if not schema: | |
67 | schema = json |
|
61 | schema = json | |
68 |
|
62 | |||
69 | # if it's a list, resolve references for each item in the list |
|
63 | # if it's a list, resolve references for each item in the list | |
70 | if type(json) is list: |
|
64 | if type(json) is list: | |
71 | resolved = [] |
|
65 | resolved = [] | |
72 | for item in json: |
|
66 | for item in json: | |
73 | resolved.append(resolve_ref(item, schema=schema)) |
|
67 | resolved.append(resolve_ref(item, schema=schema)) | |
74 |
|
68 | |||
75 | # if it's a dictionary, resolve references for each item in the |
|
69 | # if it's a dictionary, resolve references for each item in the | |
76 | # dictionary |
|
70 | # dictionary | |
77 | elif type(json) is dict: |
|
71 | elif type(json) is dict: | |
78 | resolved = {} |
|
72 | resolved = {} | |
79 | for key, ref in iteritems(json): |
|
73 | for key, ref in iteritems(json): | |
80 |
|
74 | |||
81 | # if the key is equal to $ref, then replace the entire |
|
75 | # if the key is equal to $ref, then replace the entire | |
82 | # dictionary with the resolved value |
|
76 | # dictionary with the resolved value | |
83 | if key == '$ref': |
|
77 | if key == '$ref': | |
84 | if len(json) != 1: |
|
78 | if len(json) != 1: | |
85 | raise SchemaError( |
|
79 | raise SchemaError( | |
86 | "objects containing a $ref should only have one item") |
|
80 | "objects containing a $ref should only have one item") | |
87 | pointer = jsonpointer.resolve_pointer(schema, ref) |
|
81 | pointer = jsonpointer.resolve_pointer(schema, ref) | |
88 | resolved = resolve_ref(pointer, schema=schema) |
|
82 | resolved = resolve_ref(pointer, schema=schema) | |
89 |
|
83 | |||
90 | else: |
|
84 | else: | |
91 | resolved[key] = resolve_ref(ref, schema=schema) |
|
85 | resolved[key] = resolve_ref(ref, schema=schema) | |
92 |
|
86 | |||
93 | # otherwise it's a normal object, so just return it |
|
87 | # otherwise it's a normal object, so just return it | |
94 | else: |
|
88 | else: | |
95 | resolved = json |
|
89 | resolved = json | |
96 |
|
90 | |||
97 | return resolved |
|
91 | return resolved |
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