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@@ -1,1348 +1,1345 b'' | |||||
1 | # encoding: utf-8 |
|
1 | # encoding: utf-8 | |
2 | """ |
|
2 | """ | |
3 | Facilities for launching IPython processes asynchronously. |
|
3 | Facilities for launching IPython processes asynchronously. | |
4 |
|
4 | |||
5 | Authors: |
|
5 | Authors: | |
6 |
|
6 | |||
7 | * Brian Granger |
|
7 | * Brian Granger | |
8 | * MinRK |
|
8 | * MinRK | |
9 | """ |
|
9 | """ | |
10 |
|
10 | |||
11 | #----------------------------------------------------------------------------- |
|
11 | #----------------------------------------------------------------------------- | |
12 | # Copyright (C) 2008-2011 The IPython Development Team |
|
12 | # Copyright (C) 2008-2011 The IPython Development Team | |
13 | # |
|
13 | # | |
14 | # Distributed under the terms of the BSD License. The full license is in |
|
14 | # Distributed under the terms of the BSD License. The full license is in | |
15 | # the file COPYING, distributed as part of this software. |
|
15 | # the file COPYING, distributed as part of this software. | |
16 | #----------------------------------------------------------------------------- |
|
16 | #----------------------------------------------------------------------------- | |
17 |
|
17 | |||
18 | #----------------------------------------------------------------------------- |
|
18 | #----------------------------------------------------------------------------- | |
19 | # Imports |
|
19 | # Imports | |
20 | #----------------------------------------------------------------------------- |
|
20 | #----------------------------------------------------------------------------- | |
21 |
|
21 | |||
22 | import copy |
|
22 | import copy | |
23 | import logging |
|
23 | import logging | |
24 | import os |
|
24 | import os | |
25 | import re |
|
|||
26 | import stat |
|
25 | import stat | |
27 | import time |
|
26 | import time | |
28 |
|
27 | |||
29 | # signal imports, handling various platforms, versions |
|
28 | # signal imports, handling various platforms, versions | |
30 |
|
29 | |||
31 | from signal import SIGINT, SIGTERM |
|
30 | from signal import SIGINT, SIGTERM | |
32 | try: |
|
31 | try: | |
33 | from signal import SIGKILL |
|
32 | from signal import SIGKILL | |
34 | except ImportError: |
|
33 | except ImportError: | |
35 | # Windows |
|
34 | # Windows | |
36 | SIGKILL=SIGTERM |
|
35 | SIGKILL=SIGTERM | |
37 |
|
36 | |||
38 | try: |
|
37 | try: | |
39 | # Windows >= 2.7, 3.2 |
|
38 | # Windows >= 2.7, 3.2 | |
40 | from signal import CTRL_C_EVENT as SIGINT |
|
39 | from signal import CTRL_C_EVENT as SIGINT | |
41 | except ImportError: |
|
40 | except ImportError: | |
42 | pass |
|
41 | pass | |
43 |
|
42 | |||
44 | from subprocess import Popen, PIPE, STDOUT |
|
43 | from subprocess import Popen, PIPE, STDOUT | |
45 | try: |
|
44 | try: | |
46 | from subprocess import check_output |
|
45 | from subprocess import check_output | |
47 | except ImportError: |
|
46 | except ImportError: | |
48 | # pre-2.7, define check_output with Popen |
|
47 | # pre-2.7, define check_output with Popen | |
49 | def check_output(*args, **kwargs): |
|
48 | def check_output(*args, **kwargs): | |
50 | kwargs.update(dict(stdout=PIPE)) |
|
49 | kwargs.update(dict(stdout=PIPE)) | |
51 | p = Popen(*args, **kwargs) |
|
50 | p = Popen(*args, **kwargs) | |
52 | out,err = p.communicate() |
|
51 | out,err = p.communicate() | |
53 | return out |
|
52 | return out | |
54 |
|
53 | |||
55 | from zmq.eventloop import ioloop |
|
54 | from zmq.eventloop import ioloop | |
56 |
|
55 | |||
57 | from IPython.config.application import Application |
|
56 | from IPython.config.application import Application | |
58 | from IPython.config.configurable import LoggingConfigurable |
|
57 | from IPython.config.configurable import LoggingConfigurable | |
59 | from IPython.utils.text import EvalFormatter |
|
58 | from IPython.utils.text import EvalFormatter | |
60 | from IPython.utils.traitlets import ( |
|
59 | from IPython.utils.traitlets import ( | |
61 | Any, Integer, CFloat, List, Unicode, Dict, Instance, HasTraits, |
|
60 | Any, Integer, CFloat, List, Unicode, Dict, Instance, HasTraits, CRegExp | |
62 | ) |
|
61 | ) | |
63 | from IPython.utils.path import get_ipython_module_path, get_home_dir |
|
62 | from IPython.utils.path import get_ipython_module_path, get_home_dir | |
64 | from IPython.utils.process import find_cmd, pycmd2argv, FindCmdError |
|
63 | from IPython.utils.process import find_cmd, pycmd2argv, FindCmdError | |
65 |
|
64 | |||
66 | from .win32support import forward_read_events |
|
65 | from .win32support import forward_read_events | |
67 |
|
66 | |||
68 | from .winhpcjob import IPControllerTask, IPEngineTask, IPControllerJob, IPEngineSetJob |
|
67 | from .winhpcjob import IPControllerTask, IPEngineTask, IPControllerJob, IPEngineSetJob | |
69 |
|
68 | |||
70 | WINDOWS = os.name == 'nt' |
|
69 | WINDOWS = os.name == 'nt' | |
71 |
|
70 | |||
72 | #----------------------------------------------------------------------------- |
|
71 | #----------------------------------------------------------------------------- | |
73 | # Paths to the kernel apps |
|
72 | # Paths to the kernel apps | |
74 | #----------------------------------------------------------------------------- |
|
73 | #----------------------------------------------------------------------------- | |
75 |
|
74 | |||
76 |
|
75 | |||
77 | ipcluster_cmd_argv = pycmd2argv(get_ipython_module_path( |
|
76 | ipcluster_cmd_argv = pycmd2argv(get_ipython_module_path( | |
78 | 'IPython.parallel.apps.ipclusterapp' |
|
77 | 'IPython.parallel.apps.ipclusterapp' | |
79 | )) |
|
78 | )) | |
80 |
|
79 | |||
81 | ipengine_cmd_argv = pycmd2argv(get_ipython_module_path( |
|
80 | ipengine_cmd_argv = pycmd2argv(get_ipython_module_path( | |
82 | 'IPython.parallel.apps.ipengineapp' |
|
81 | 'IPython.parallel.apps.ipengineapp' | |
83 | )) |
|
82 | )) | |
84 |
|
83 | |||
85 | ipcontroller_cmd_argv = pycmd2argv(get_ipython_module_path( |
|
84 | ipcontroller_cmd_argv = pycmd2argv(get_ipython_module_path( | |
86 | 'IPython.parallel.apps.ipcontrollerapp' |
|
85 | 'IPython.parallel.apps.ipcontrollerapp' | |
87 | )) |
|
86 | )) | |
88 |
|
87 | |||
89 | #----------------------------------------------------------------------------- |
|
88 | #----------------------------------------------------------------------------- | |
90 | # Base launchers and errors |
|
89 | # Base launchers and errors | |
91 | #----------------------------------------------------------------------------- |
|
90 | #----------------------------------------------------------------------------- | |
92 |
|
91 | |||
93 |
|
92 | |||
94 | class LauncherError(Exception): |
|
93 | class LauncherError(Exception): | |
95 | pass |
|
94 | pass | |
96 |
|
95 | |||
97 |
|
96 | |||
98 | class ProcessStateError(LauncherError): |
|
97 | class ProcessStateError(LauncherError): | |
99 | pass |
|
98 | pass | |
100 |
|
99 | |||
101 |
|
100 | |||
102 | class UnknownStatus(LauncherError): |
|
101 | class UnknownStatus(LauncherError): | |
103 | pass |
|
102 | pass | |
104 |
|
103 | |||
105 |
|
104 | |||
106 | class BaseLauncher(LoggingConfigurable): |
|
105 | class BaseLauncher(LoggingConfigurable): | |
107 | """An asbtraction for starting, stopping and signaling a process.""" |
|
106 | """An asbtraction for starting, stopping and signaling a process.""" | |
108 |
|
107 | |||
109 | # In all of the launchers, the work_dir is where child processes will be |
|
108 | # In all of the launchers, the work_dir is where child processes will be | |
110 | # run. This will usually be the profile_dir, but may not be. any work_dir |
|
109 | # run. This will usually be the profile_dir, but may not be. any work_dir | |
111 | # passed into the __init__ method will override the config value. |
|
110 | # passed into the __init__ method will override the config value. | |
112 | # This should not be used to set the work_dir for the actual engine |
|
111 | # This should not be used to set the work_dir for the actual engine | |
113 | # and controller. Instead, use their own config files or the |
|
112 | # and controller. Instead, use their own config files or the | |
114 | # controller_args, engine_args attributes of the launchers to add |
|
113 | # controller_args, engine_args attributes of the launchers to add | |
115 | # the work_dir option. |
|
114 | # the work_dir option. | |
116 | work_dir = Unicode(u'.') |
|
115 | work_dir = Unicode(u'.') | |
117 | loop = Instance('zmq.eventloop.ioloop.IOLoop') |
|
116 | loop = Instance('zmq.eventloop.ioloop.IOLoop') | |
118 |
|
117 | |||
119 | start_data = Any() |
|
118 | start_data = Any() | |
120 | stop_data = Any() |
|
119 | stop_data = Any() | |
121 |
|
120 | |||
122 | def _loop_default(self): |
|
121 | def _loop_default(self): | |
123 | return ioloop.IOLoop.instance() |
|
122 | return ioloop.IOLoop.instance() | |
124 |
|
123 | |||
125 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
124 | def __init__(self, work_dir=u'.', config=None, **kwargs): | |
126 | super(BaseLauncher, self).__init__(work_dir=work_dir, config=config, **kwargs) |
|
125 | super(BaseLauncher, self).__init__(work_dir=work_dir, config=config, **kwargs) | |
127 | self.state = 'before' # can be before, running, after |
|
126 | self.state = 'before' # can be before, running, after | |
128 | self.stop_callbacks = [] |
|
127 | self.stop_callbacks = [] | |
129 | self.start_data = None |
|
128 | self.start_data = None | |
130 | self.stop_data = None |
|
129 | self.stop_data = None | |
131 |
|
130 | |||
132 | @property |
|
131 | @property | |
133 | def args(self): |
|
132 | def args(self): | |
134 | """A list of cmd and args that will be used to start the process. |
|
133 | """A list of cmd and args that will be used to start the process. | |
135 |
|
134 | |||
136 | This is what is passed to :func:`spawnProcess` and the first element |
|
135 | This is what is passed to :func:`spawnProcess` and the first element | |
137 | will be the process name. |
|
136 | will be the process name. | |
138 | """ |
|
137 | """ | |
139 | return self.find_args() |
|
138 | return self.find_args() | |
140 |
|
139 | |||
141 | def find_args(self): |
|
140 | def find_args(self): | |
142 | """The ``.args`` property calls this to find the args list. |
|
141 | """The ``.args`` property calls this to find the args list. | |
143 |
|
142 | |||
144 | Subcommand should implement this to construct the cmd and args. |
|
143 | Subcommand should implement this to construct the cmd and args. | |
145 | """ |
|
144 | """ | |
146 | raise NotImplementedError('find_args must be implemented in a subclass') |
|
145 | raise NotImplementedError('find_args must be implemented in a subclass') | |
147 |
|
146 | |||
148 | @property |
|
147 | @property | |
149 | def arg_str(self): |
|
148 | def arg_str(self): | |
150 | """The string form of the program arguments.""" |
|
149 | """The string form of the program arguments.""" | |
151 | return ' '.join(self.args) |
|
150 | return ' '.join(self.args) | |
152 |
|
151 | |||
153 | @property |
|
152 | @property | |
154 | def running(self): |
|
153 | def running(self): | |
155 | """Am I running.""" |
|
154 | """Am I running.""" | |
156 | if self.state == 'running': |
|
155 | if self.state == 'running': | |
157 | return True |
|
156 | return True | |
158 | else: |
|
157 | else: | |
159 | return False |
|
158 | return False | |
160 |
|
159 | |||
161 | def start(self): |
|
160 | def start(self): | |
162 | """Start the process.""" |
|
161 | """Start the process.""" | |
163 | raise NotImplementedError('start must be implemented in a subclass') |
|
162 | raise NotImplementedError('start must be implemented in a subclass') | |
164 |
|
163 | |||
165 | def stop(self): |
|
164 | def stop(self): | |
166 | """Stop the process and notify observers of stopping. |
|
165 | """Stop the process and notify observers of stopping. | |
167 |
|
166 | |||
168 | This method will return None immediately. |
|
167 | This method will return None immediately. | |
169 | To observe the actual process stopping, see :meth:`on_stop`. |
|
168 | To observe the actual process stopping, see :meth:`on_stop`. | |
170 | """ |
|
169 | """ | |
171 | raise NotImplementedError('stop must be implemented in a subclass') |
|
170 | raise NotImplementedError('stop must be implemented in a subclass') | |
172 |
|
171 | |||
173 | def on_stop(self, f): |
|
172 | def on_stop(self, f): | |
174 | """Register a callback to be called with this Launcher's stop_data |
|
173 | """Register a callback to be called with this Launcher's stop_data | |
175 | when the process actually finishes. |
|
174 | when the process actually finishes. | |
176 | """ |
|
175 | """ | |
177 | if self.state=='after': |
|
176 | if self.state=='after': | |
178 | return f(self.stop_data) |
|
177 | return f(self.stop_data) | |
179 | else: |
|
178 | else: | |
180 | self.stop_callbacks.append(f) |
|
179 | self.stop_callbacks.append(f) | |
181 |
|
180 | |||
182 | def notify_start(self, data): |
|
181 | def notify_start(self, data): | |
183 | """Call this to trigger startup actions. |
|
182 | """Call this to trigger startup actions. | |
184 |
|
183 | |||
185 | This logs the process startup and sets the state to 'running'. It is |
|
184 | This logs the process startup and sets the state to 'running'. It is | |
186 | a pass-through so it can be used as a callback. |
|
185 | a pass-through so it can be used as a callback. | |
187 | """ |
|
186 | """ | |
188 |
|
187 | |||
189 | self.log.debug('Process %r started: %r', self.args[0], data) |
|
188 | self.log.debug('Process %r started: %r', self.args[0], data) | |
190 | self.start_data = data |
|
189 | self.start_data = data | |
191 | self.state = 'running' |
|
190 | self.state = 'running' | |
192 | return data |
|
191 | return data | |
193 |
|
192 | |||
194 | def notify_stop(self, data): |
|
193 | def notify_stop(self, data): | |
195 | """Call this to trigger process stop actions. |
|
194 | """Call this to trigger process stop actions. | |
196 |
|
195 | |||
197 | This logs the process stopping and sets the state to 'after'. Call |
|
196 | This logs the process stopping and sets the state to 'after'. Call | |
198 | this to trigger callbacks registered via :meth:`on_stop`.""" |
|
197 | this to trigger callbacks registered via :meth:`on_stop`.""" | |
199 |
|
198 | |||
200 | self.log.debug('Process %r stopped: %r', self.args[0], data) |
|
199 | self.log.debug('Process %r stopped: %r', self.args[0], data) | |
201 | self.stop_data = data |
|
200 | self.stop_data = data | |
202 | self.state = 'after' |
|
201 | self.state = 'after' | |
203 | for i in range(len(self.stop_callbacks)): |
|
202 | for i in range(len(self.stop_callbacks)): | |
204 | d = self.stop_callbacks.pop() |
|
203 | d = self.stop_callbacks.pop() | |
205 | d(data) |
|
204 | d(data) | |
206 | return data |
|
205 | return data | |
207 |
|
206 | |||
208 | def signal(self, sig): |
|
207 | def signal(self, sig): | |
209 | """Signal the process. |
|
208 | """Signal the process. | |
210 |
|
209 | |||
211 | Parameters |
|
210 | Parameters | |
212 | ---------- |
|
211 | ---------- | |
213 | sig : str or int |
|
212 | sig : str or int | |
214 | 'KILL', 'INT', etc., or any signal number |
|
213 | 'KILL', 'INT', etc., or any signal number | |
215 | """ |
|
214 | """ | |
216 | raise NotImplementedError('signal must be implemented in a subclass') |
|
215 | raise NotImplementedError('signal must be implemented in a subclass') | |
217 |
|
216 | |||
218 | class ClusterAppMixin(HasTraits): |
|
217 | class ClusterAppMixin(HasTraits): | |
219 | """MixIn for cluster args as traits""" |
|
218 | """MixIn for cluster args as traits""" | |
220 | profile_dir=Unicode('') |
|
219 | profile_dir=Unicode('') | |
221 | cluster_id=Unicode('') |
|
220 | cluster_id=Unicode('') | |
222 |
|
221 | |||
223 | @property |
|
222 | @property | |
224 | def cluster_args(self): |
|
223 | def cluster_args(self): | |
225 | return ['--profile-dir', self.profile_dir, '--cluster-id', self.cluster_id] |
|
224 | return ['--profile-dir', self.profile_dir, '--cluster-id', self.cluster_id] | |
226 |
|
225 | |||
227 | class ControllerMixin(ClusterAppMixin): |
|
226 | class ControllerMixin(ClusterAppMixin): | |
228 | controller_cmd = List(ipcontroller_cmd_argv, config=True, |
|
227 | controller_cmd = List(ipcontroller_cmd_argv, config=True, | |
229 | help="""Popen command to launch ipcontroller.""") |
|
228 | help="""Popen command to launch ipcontroller.""") | |
230 | # Command line arguments to ipcontroller. |
|
229 | # Command line arguments to ipcontroller. | |
231 | controller_args = List(['--log-to-file','--log-level=%i' % logging.INFO], config=True, |
|
230 | controller_args = List(['--log-to-file','--log-level=%i' % logging.INFO], config=True, | |
232 | help="""command-line args to pass to ipcontroller""") |
|
231 | help="""command-line args to pass to ipcontroller""") | |
233 |
|
232 | |||
234 | class EngineMixin(ClusterAppMixin): |
|
233 | class EngineMixin(ClusterAppMixin): | |
235 | engine_cmd = List(ipengine_cmd_argv, config=True, |
|
234 | engine_cmd = List(ipengine_cmd_argv, config=True, | |
236 | help="""command to launch the Engine.""") |
|
235 | help="""command to launch the Engine.""") | |
237 | # Command line arguments for ipengine. |
|
236 | # Command line arguments for ipengine. | |
238 | engine_args = List(['--log-to-file','--log-level=%i' % logging.INFO], config=True, |
|
237 | engine_args = List(['--log-to-file','--log-level=%i' % logging.INFO], config=True, | |
239 | help="command-line arguments to pass to ipengine" |
|
238 | help="command-line arguments to pass to ipengine" | |
240 | ) |
|
239 | ) | |
241 |
|
240 | |||
242 |
|
241 | |||
243 | #----------------------------------------------------------------------------- |
|
242 | #----------------------------------------------------------------------------- | |
244 | # Local process launchers |
|
243 | # Local process launchers | |
245 | #----------------------------------------------------------------------------- |
|
244 | #----------------------------------------------------------------------------- | |
246 |
|
245 | |||
247 |
|
246 | |||
248 | class LocalProcessLauncher(BaseLauncher): |
|
247 | class LocalProcessLauncher(BaseLauncher): | |
249 | """Start and stop an external process in an asynchronous manner. |
|
248 | """Start and stop an external process in an asynchronous manner. | |
250 |
|
249 | |||
251 | This will launch the external process with a working directory of |
|
250 | This will launch the external process with a working directory of | |
252 | ``self.work_dir``. |
|
251 | ``self.work_dir``. | |
253 | """ |
|
252 | """ | |
254 |
|
253 | |||
255 | # This is used to to construct self.args, which is passed to |
|
254 | # This is used to to construct self.args, which is passed to | |
256 | # spawnProcess. |
|
255 | # spawnProcess. | |
257 | cmd_and_args = List([]) |
|
256 | cmd_and_args = List([]) | |
258 | poll_frequency = Integer(100) # in ms |
|
257 | poll_frequency = Integer(100) # in ms | |
259 |
|
258 | |||
260 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
259 | def __init__(self, work_dir=u'.', config=None, **kwargs): | |
261 | super(LocalProcessLauncher, self).__init__( |
|
260 | super(LocalProcessLauncher, self).__init__( | |
262 | work_dir=work_dir, config=config, **kwargs |
|
261 | work_dir=work_dir, config=config, **kwargs | |
263 | ) |
|
262 | ) | |
264 | self.process = None |
|
263 | self.process = None | |
265 | self.poller = None |
|
264 | self.poller = None | |
266 |
|
265 | |||
267 | def find_args(self): |
|
266 | def find_args(self): | |
268 | return self.cmd_and_args |
|
267 | return self.cmd_and_args | |
269 |
|
268 | |||
270 | def start(self): |
|
269 | def start(self): | |
271 | self.log.debug("Starting %s: %r", self.__class__.__name__, self.args) |
|
270 | self.log.debug("Starting %s: %r", self.__class__.__name__, self.args) | |
272 | if self.state == 'before': |
|
271 | if self.state == 'before': | |
273 | self.process = Popen(self.args, |
|
272 | self.process = Popen(self.args, | |
274 | stdout=PIPE,stderr=PIPE,stdin=PIPE, |
|
273 | stdout=PIPE,stderr=PIPE,stdin=PIPE, | |
275 | env=os.environ, |
|
274 | env=os.environ, | |
276 | cwd=self.work_dir |
|
275 | cwd=self.work_dir | |
277 | ) |
|
276 | ) | |
278 | if WINDOWS: |
|
277 | if WINDOWS: | |
279 | self.stdout = forward_read_events(self.process.stdout) |
|
278 | self.stdout = forward_read_events(self.process.stdout) | |
280 | self.stderr = forward_read_events(self.process.stderr) |
|
279 | self.stderr = forward_read_events(self.process.stderr) | |
281 | else: |
|
280 | else: | |
282 | self.stdout = self.process.stdout.fileno() |
|
281 | self.stdout = self.process.stdout.fileno() | |
283 | self.stderr = self.process.stderr.fileno() |
|
282 | self.stderr = self.process.stderr.fileno() | |
284 | self.loop.add_handler(self.stdout, self.handle_stdout, self.loop.READ) |
|
283 | self.loop.add_handler(self.stdout, self.handle_stdout, self.loop.READ) | |
285 | self.loop.add_handler(self.stderr, self.handle_stderr, self.loop.READ) |
|
284 | self.loop.add_handler(self.stderr, self.handle_stderr, self.loop.READ) | |
286 | self.poller = ioloop.PeriodicCallback(self.poll, self.poll_frequency, self.loop) |
|
285 | self.poller = ioloop.PeriodicCallback(self.poll, self.poll_frequency, self.loop) | |
287 | self.poller.start() |
|
286 | self.poller.start() | |
288 | self.notify_start(self.process.pid) |
|
287 | self.notify_start(self.process.pid) | |
289 | else: |
|
288 | else: | |
290 | s = 'The process was already started and has state: %r' % self.state |
|
289 | s = 'The process was already started and has state: %r' % self.state | |
291 | raise ProcessStateError(s) |
|
290 | raise ProcessStateError(s) | |
292 |
|
291 | |||
293 | def stop(self): |
|
292 | def stop(self): | |
294 | return self.interrupt_then_kill() |
|
293 | return self.interrupt_then_kill() | |
295 |
|
294 | |||
296 | def signal(self, sig): |
|
295 | def signal(self, sig): | |
297 | if self.state == 'running': |
|
296 | if self.state == 'running': | |
298 | if WINDOWS and sig != SIGINT: |
|
297 | if WINDOWS and sig != SIGINT: | |
299 | # use Windows tree-kill for better child cleanup |
|
298 | # use Windows tree-kill for better child cleanup | |
300 | check_output(['taskkill', '-pid', str(self.process.pid), '-t', '-f']) |
|
299 | check_output(['taskkill', '-pid', str(self.process.pid), '-t', '-f']) | |
301 | else: |
|
300 | else: | |
302 | self.process.send_signal(sig) |
|
301 | self.process.send_signal(sig) | |
303 |
|
302 | |||
304 | def interrupt_then_kill(self, delay=2.0): |
|
303 | def interrupt_then_kill(self, delay=2.0): | |
305 | """Send INT, wait a delay and then send KILL.""" |
|
304 | """Send INT, wait a delay and then send KILL.""" | |
306 | try: |
|
305 | try: | |
307 | self.signal(SIGINT) |
|
306 | self.signal(SIGINT) | |
308 | except Exception: |
|
307 | except Exception: | |
309 | self.log.debug("interrupt failed") |
|
308 | self.log.debug("interrupt failed") | |
310 | pass |
|
309 | pass | |
311 | self.killer = ioloop.DelayedCallback(lambda : self.signal(SIGKILL), delay*1000, self.loop) |
|
310 | self.killer = ioloop.DelayedCallback(lambda : self.signal(SIGKILL), delay*1000, self.loop) | |
312 | self.killer.start() |
|
311 | self.killer.start() | |
313 |
|
312 | |||
314 | # callbacks, etc: |
|
313 | # callbacks, etc: | |
315 |
|
314 | |||
316 | def handle_stdout(self, fd, events): |
|
315 | def handle_stdout(self, fd, events): | |
317 | if WINDOWS: |
|
316 | if WINDOWS: | |
318 | line = self.stdout.recv() |
|
317 | line = self.stdout.recv() | |
319 | else: |
|
318 | else: | |
320 | line = self.process.stdout.readline() |
|
319 | line = self.process.stdout.readline() | |
321 | # a stopped process will be readable but return empty strings |
|
320 | # a stopped process will be readable but return empty strings | |
322 | if line: |
|
321 | if line: | |
323 | self.log.debug(line[:-1]) |
|
322 | self.log.debug(line[:-1]) | |
324 | else: |
|
323 | else: | |
325 | self.poll() |
|
324 | self.poll() | |
326 |
|
325 | |||
327 | def handle_stderr(self, fd, events): |
|
326 | def handle_stderr(self, fd, events): | |
328 | if WINDOWS: |
|
327 | if WINDOWS: | |
329 | line = self.stderr.recv() |
|
328 | line = self.stderr.recv() | |
330 | else: |
|
329 | else: | |
331 | line = self.process.stderr.readline() |
|
330 | line = self.process.stderr.readline() | |
332 | # a stopped process will be readable but return empty strings |
|
331 | # a stopped process will be readable but return empty strings | |
333 | if line: |
|
332 | if line: | |
334 | self.log.debug(line[:-1]) |
|
333 | self.log.debug(line[:-1]) | |
335 | else: |
|
334 | else: | |
336 | self.poll() |
|
335 | self.poll() | |
337 |
|
336 | |||
338 | def poll(self): |
|
337 | def poll(self): | |
339 | status = self.process.poll() |
|
338 | status = self.process.poll() | |
340 | if status is not None: |
|
339 | if status is not None: | |
341 | self.poller.stop() |
|
340 | self.poller.stop() | |
342 | self.loop.remove_handler(self.stdout) |
|
341 | self.loop.remove_handler(self.stdout) | |
343 | self.loop.remove_handler(self.stderr) |
|
342 | self.loop.remove_handler(self.stderr) | |
344 | self.notify_stop(dict(exit_code=status, pid=self.process.pid)) |
|
343 | self.notify_stop(dict(exit_code=status, pid=self.process.pid)) | |
345 | return status |
|
344 | return status | |
346 |
|
345 | |||
347 | class LocalControllerLauncher(LocalProcessLauncher, ControllerMixin): |
|
346 | class LocalControllerLauncher(LocalProcessLauncher, ControllerMixin): | |
348 | """Launch a controller as a regular external process.""" |
|
347 | """Launch a controller as a regular external process.""" | |
349 |
|
348 | |||
350 | def find_args(self): |
|
349 | def find_args(self): | |
351 | return self.controller_cmd + self.cluster_args + self.controller_args |
|
350 | return self.controller_cmd + self.cluster_args + self.controller_args | |
352 |
|
351 | |||
353 | def start(self): |
|
352 | def start(self): | |
354 | """Start the controller by profile_dir.""" |
|
353 | """Start the controller by profile_dir.""" | |
355 | return super(LocalControllerLauncher, self).start() |
|
354 | return super(LocalControllerLauncher, self).start() | |
356 |
|
355 | |||
357 |
|
356 | |||
358 | class LocalEngineLauncher(LocalProcessLauncher, EngineMixin): |
|
357 | class LocalEngineLauncher(LocalProcessLauncher, EngineMixin): | |
359 | """Launch a single engine as a regular externall process.""" |
|
358 | """Launch a single engine as a regular externall process.""" | |
360 |
|
359 | |||
361 | def find_args(self): |
|
360 | def find_args(self): | |
362 | return self.engine_cmd + self.cluster_args + self.engine_args |
|
361 | return self.engine_cmd + self.cluster_args + self.engine_args | |
363 |
|
362 | |||
364 |
|
363 | |||
365 | class LocalEngineSetLauncher(LocalEngineLauncher): |
|
364 | class LocalEngineSetLauncher(LocalEngineLauncher): | |
366 | """Launch a set of engines as regular external processes.""" |
|
365 | """Launch a set of engines as regular external processes.""" | |
367 |
|
366 | |||
368 | delay = CFloat(0.1, config=True, |
|
367 | delay = CFloat(0.1, config=True, | |
369 | help="""delay (in seconds) between starting each engine after the first. |
|
368 | help="""delay (in seconds) between starting each engine after the first. | |
370 | This can help force the engines to get their ids in order, or limit |
|
369 | This can help force the engines to get their ids in order, or limit | |
371 | process flood when starting many engines.""" |
|
370 | process flood when starting many engines.""" | |
372 | ) |
|
371 | ) | |
373 |
|
372 | |||
374 | # launcher class |
|
373 | # launcher class | |
375 | launcher_class = LocalEngineLauncher |
|
374 | launcher_class = LocalEngineLauncher | |
376 |
|
375 | |||
377 | launchers = Dict() |
|
376 | launchers = Dict() | |
378 | stop_data = Dict() |
|
377 | stop_data = Dict() | |
379 |
|
378 | |||
380 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
379 | def __init__(self, work_dir=u'.', config=None, **kwargs): | |
381 | super(LocalEngineSetLauncher, self).__init__( |
|
380 | super(LocalEngineSetLauncher, self).__init__( | |
382 | work_dir=work_dir, config=config, **kwargs |
|
381 | work_dir=work_dir, config=config, **kwargs | |
383 | ) |
|
382 | ) | |
384 | self.stop_data = {} |
|
383 | self.stop_data = {} | |
385 |
|
384 | |||
386 | def start(self, n): |
|
385 | def start(self, n): | |
387 | """Start n engines by profile or profile_dir.""" |
|
386 | """Start n engines by profile or profile_dir.""" | |
388 | dlist = [] |
|
387 | dlist = [] | |
389 | for i in range(n): |
|
388 | for i in range(n): | |
390 | if i > 0: |
|
389 | if i > 0: | |
391 | time.sleep(self.delay) |
|
390 | time.sleep(self.delay) | |
392 | el = self.launcher_class(work_dir=self.work_dir, config=self.config, log=self.log, |
|
391 | el = self.launcher_class(work_dir=self.work_dir, config=self.config, log=self.log, | |
393 | profile_dir=self.profile_dir, cluster_id=self.cluster_id, |
|
392 | profile_dir=self.profile_dir, cluster_id=self.cluster_id, | |
394 | ) |
|
393 | ) | |
395 |
|
394 | |||
396 | # Copy the engine args over to each engine launcher. |
|
395 | # Copy the engine args over to each engine launcher. | |
397 | el.engine_cmd = copy.deepcopy(self.engine_cmd) |
|
396 | el.engine_cmd = copy.deepcopy(self.engine_cmd) | |
398 | el.engine_args = copy.deepcopy(self.engine_args) |
|
397 | el.engine_args = copy.deepcopy(self.engine_args) | |
399 | el.on_stop(self._notice_engine_stopped) |
|
398 | el.on_stop(self._notice_engine_stopped) | |
400 | d = el.start() |
|
399 | d = el.start() | |
401 | self.launchers[i] = el |
|
400 | self.launchers[i] = el | |
402 | dlist.append(d) |
|
401 | dlist.append(d) | |
403 | self.notify_start(dlist) |
|
402 | self.notify_start(dlist) | |
404 | return dlist |
|
403 | return dlist | |
405 |
|
404 | |||
406 | def find_args(self): |
|
405 | def find_args(self): | |
407 | return ['engine set'] |
|
406 | return ['engine set'] | |
408 |
|
407 | |||
409 | def signal(self, sig): |
|
408 | def signal(self, sig): | |
410 | dlist = [] |
|
409 | dlist = [] | |
411 | for el in self.launchers.itervalues(): |
|
410 | for el in self.launchers.itervalues(): | |
412 | d = el.signal(sig) |
|
411 | d = el.signal(sig) | |
413 | dlist.append(d) |
|
412 | dlist.append(d) | |
414 | return dlist |
|
413 | return dlist | |
415 |
|
414 | |||
416 | def interrupt_then_kill(self, delay=1.0): |
|
415 | def interrupt_then_kill(self, delay=1.0): | |
417 | dlist = [] |
|
416 | dlist = [] | |
418 | for el in self.launchers.itervalues(): |
|
417 | for el in self.launchers.itervalues(): | |
419 | d = el.interrupt_then_kill(delay) |
|
418 | d = el.interrupt_then_kill(delay) | |
420 | dlist.append(d) |
|
419 | dlist.append(d) | |
421 | return dlist |
|
420 | return dlist | |
422 |
|
421 | |||
423 | def stop(self): |
|
422 | def stop(self): | |
424 | return self.interrupt_then_kill() |
|
423 | return self.interrupt_then_kill() | |
425 |
|
424 | |||
426 | def _notice_engine_stopped(self, data): |
|
425 | def _notice_engine_stopped(self, data): | |
427 | pid = data['pid'] |
|
426 | pid = data['pid'] | |
428 | for idx,el in self.launchers.iteritems(): |
|
427 | for idx,el in self.launchers.iteritems(): | |
429 | if el.process.pid == pid: |
|
428 | if el.process.pid == pid: | |
430 | break |
|
429 | break | |
431 | self.launchers.pop(idx) |
|
430 | self.launchers.pop(idx) | |
432 | self.stop_data[idx] = data |
|
431 | self.stop_data[idx] = data | |
433 | if not self.launchers: |
|
432 | if not self.launchers: | |
434 | self.notify_stop(self.stop_data) |
|
433 | self.notify_stop(self.stop_data) | |
435 |
|
434 | |||
436 |
|
435 | |||
437 | #----------------------------------------------------------------------------- |
|
436 | #----------------------------------------------------------------------------- | |
438 | # MPI launchers |
|
437 | # MPI launchers | |
439 | #----------------------------------------------------------------------------- |
|
438 | #----------------------------------------------------------------------------- | |
440 |
|
439 | |||
441 |
|
440 | |||
442 | class MPILauncher(LocalProcessLauncher): |
|
441 | class MPILauncher(LocalProcessLauncher): | |
443 | """Launch an external process using mpiexec.""" |
|
442 | """Launch an external process using mpiexec.""" | |
444 |
|
443 | |||
445 | mpi_cmd = List(['mpiexec'], config=True, |
|
444 | mpi_cmd = List(['mpiexec'], config=True, | |
446 | help="The mpiexec command to use in starting the process." |
|
445 | help="The mpiexec command to use in starting the process." | |
447 | ) |
|
446 | ) | |
448 | mpi_args = List([], config=True, |
|
447 | mpi_args = List([], config=True, | |
449 | help="The command line arguments to pass to mpiexec." |
|
448 | help="The command line arguments to pass to mpiexec." | |
450 | ) |
|
449 | ) | |
451 | program = List(['date'], |
|
450 | program = List(['date'], | |
452 | help="The program to start via mpiexec.") |
|
451 | help="The program to start via mpiexec.") | |
453 | program_args = List([], |
|
452 | program_args = List([], | |
454 | help="The command line argument to the program." |
|
453 | help="The command line argument to the program." | |
455 | ) |
|
454 | ) | |
456 | n = Integer(1) |
|
455 | n = Integer(1) | |
457 |
|
456 | |||
458 | def __init__(self, *args, **kwargs): |
|
457 | def __init__(self, *args, **kwargs): | |
459 | # deprecation for old MPIExec names: |
|
458 | # deprecation for old MPIExec names: | |
460 | config = kwargs.get('config', {}) |
|
459 | config = kwargs.get('config', {}) | |
461 | for oldname in ('MPIExecLauncher', 'MPIExecControllerLauncher', 'MPIExecEngineSetLauncher'): |
|
460 | for oldname in ('MPIExecLauncher', 'MPIExecControllerLauncher', 'MPIExecEngineSetLauncher'): | |
462 | deprecated = config.get(oldname) |
|
461 | deprecated = config.get(oldname) | |
463 | if deprecated: |
|
462 | if deprecated: | |
464 | newname = oldname.replace('MPIExec', 'MPI') |
|
463 | newname = oldname.replace('MPIExec', 'MPI') | |
465 | config[newname].update(deprecated) |
|
464 | config[newname].update(deprecated) | |
466 | self.log.warn("WARNING: %s name has been deprecated, use %s", oldname, newname) |
|
465 | self.log.warn("WARNING: %s name has been deprecated, use %s", oldname, newname) | |
467 |
|
466 | |||
468 | super(MPILauncher, self).__init__(*args, **kwargs) |
|
467 | super(MPILauncher, self).__init__(*args, **kwargs) | |
469 |
|
468 | |||
470 | def find_args(self): |
|
469 | def find_args(self): | |
471 | """Build self.args using all the fields.""" |
|
470 | """Build self.args using all the fields.""" | |
472 | return self.mpi_cmd + ['-n', str(self.n)] + self.mpi_args + \ |
|
471 | return self.mpi_cmd + ['-n', str(self.n)] + self.mpi_args + \ | |
473 | self.program + self.program_args |
|
472 | self.program + self.program_args | |
474 |
|
473 | |||
475 | def start(self, n): |
|
474 | def start(self, n): | |
476 | """Start n instances of the program using mpiexec.""" |
|
475 | """Start n instances of the program using mpiexec.""" | |
477 | self.n = n |
|
476 | self.n = n | |
478 | return super(MPILauncher, self).start() |
|
477 | return super(MPILauncher, self).start() | |
479 |
|
478 | |||
480 |
|
479 | |||
481 | class MPIControllerLauncher(MPILauncher, ControllerMixin): |
|
480 | class MPIControllerLauncher(MPILauncher, ControllerMixin): | |
482 | """Launch a controller using mpiexec.""" |
|
481 | """Launch a controller using mpiexec.""" | |
483 |
|
482 | |||
484 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
483 | # alias back to *non-configurable* program[_args] for use in find_args() | |
485 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
484 | # this way all Controller/EngineSetLaunchers have the same form, rather | |
486 | # than *some* having `program_args` and others `controller_args` |
|
485 | # than *some* having `program_args` and others `controller_args` | |
487 | @property |
|
486 | @property | |
488 | def program(self): |
|
487 | def program(self): | |
489 | return self.controller_cmd |
|
488 | return self.controller_cmd | |
490 |
|
489 | |||
491 | @property |
|
490 | @property | |
492 | def program_args(self): |
|
491 | def program_args(self): | |
493 | return self.cluster_args + self.controller_args |
|
492 | return self.cluster_args + self.controller_args | |
494 |
|
493 | |||
495 | def start(self): |
|
494 | def start(self): | |
496 | """Start the controller by profile_dir.""" |
|
495 | """Start the controller by profile_dir.""" | |
497 | return super(MPIControllerLauncher, self).start(1) |
|
496 | return super(MPIControllerLauncher, self).start(1) | |
498 |
|
497 | |||
499 |
|
498 | |||
500 | class MPIEngineSetLauncher(MPILauncher, EngineMixin): |
|
499 | class MPIEngineSetLauncher(MPILauncher, EngineMixin): | |
501 | """Launch engines using mpiexec""" |
|
500 | """Launch engines using mpiexec""" | |
502 |
|
501 | |||
503 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
502 | # alias back to *non-configurable* program[_args] for use in find_args() | |
504 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
503 | # this way all Controller/EngineSetLaunchers have the same form, rather | |
505 | # than *some* having `program_args` and others `controller_args` |
|
504 | # than *some* having `program_args` and others `controller_args` | |
506 | @property |
|
505 | @property | |
507 | def program(self): |
|
506 | def program(self): | |
508 | return self.engine_cmd |
|
507 | return self.engine_cmd | |
509 |
|
508 | |||
510 | @property |
|
509 | @property | |
511 | def program_args(self): |
|
510 | def program_args(self): | |
512 | return self.cluster_args + self.engine_args |
|
511 | return self.cluster_args + self.engine_args | |
513 |
|
512 | |||
514 | def start(self, n): |
|
513 | def start(self, n): | |
515 | """Start n engines by profile or profile_dir.""" |
|
514 | """Start n engines by profile or profile_dir.""" | |
516 | self.n = n |
|
515 | self.n = n | |
517 | return super(MPIEngineSetLauncher, self).start(n) |
|
516 | return super(MPIEngineSetLauncher, self).start(n) | |
518 |
|
517 | |||
519 | # deprecated MPIExec names |
|
518 | # deprecated MPIExec names | |
520 | class DeprecatedMPILauncher(object): |
|
519 | class DeprecatedMPILauncher(object): | |
521 | def warn(self): |
|
520 | def warn(self): | |
522 | oldname = self.__class__.__name__ |
|
521 | oldname = self.__class__.__name__ | |
523 | newname = oldname.replace('MPIExec', 'MPI') |
|
522 | newname = oldname.replace('MPIExec', 'MPI') | |
524 | self.log.warn("WARNING: %s name is deprecated, use %s", oldname, newname) |
|
523 | self.log.warn("WARNING: %s name is deprecated, use %s", oldname, newname) | |
525 |
|
524 | |||
526 | class MPIExecLauncher(MPILauncher, DeprecatedMPILauncher): |
|
525 | class MPIExecLauncher(MPILauncher, DeprecatedMPILauncher): | |
527 | """Deprecated, use MPILauncher""" |
|
526 | """Deprecated, use MPILauncher""" | |
528 | def __init__(self, *args, **kwargs): |
|
527 | def __init__(self, *args, **kwargs): | |
529 | super(MPIExecLauncher, self).__init__(*args, **kwargs) |
|
528 | super(MPIExecLauncher, self).__init__(*args, **kwargs) | |
530 | self.warn() |
|
529 | self.warn() | |
531 |
|
530 | |||
532 | class MPIExecControllerLauncher(MPIControllerLauncher, DeprecatedMPILauncher): |
|
531 | class MPIExecControllerLauncher(MPIControllerLauncher, DeprecatedMPILauncher): | |
533 | """Deprecated, use MPIControllerLauncher""" |
|
532 | """Deprecated, use MPIControllerLauncher""" | |
534 | def __init__(self, *args, **kwargs): |
|
533 | def __init__(self, *args, **kwargs): | |
535 | super(MPIExecControllerLauncher, self).__init__(*args, **kwargs) |
|
534 | super(MPIExecControllerLauncher, self).__init__(*args, **kwargs) | |
536 | self.warn() |
|
535 | self.warn() | |
537 |
|
536 | |||
538 | class MPIExecEngineSetLauncher(MPIEngineSetLauncher, DeprecatedMPILauncher): |
|
537 | class MPIExecEngineSetLauncher(MPIEngineSetLauncher, DeprecatedMPILauncher): | |
539 | """Deprecated, use MPIEngineSetLauncher""" |
|
538 | """Deprecated, use MPIEngineSetLauncher""" | |
540 | def __init__(self, *args, **kwargs): |
|
539 | def __init__(self, *args, **kwargs): | |
541 | super(MPIExecEngineSetLauncher, self).__init__(*args, **kwargs) |
|
540 | super(MPIExecEngineSetLauncher, self).__init__(*args, **kwargs) | |
542 | self.warn() |
|
541 | self.warn() | |
543 |
|
542 | |||
544 |
|
543 | |||
545 | #----------------------------------------------------------------------------- |
|
544 | #----------------------------------------------------------------------------- | |
546 | # SSH launchers |
|
545 | # SSH launchers | |
547 | #----------------------------------------------------------------------------- |
|
546 | #----------------------------------------------------------------------------- | |
548 |
|
547 | |||
549 | # TODO: Get SSH Launcher back to level of sshx in 0.10.2 |
|
548 | # TODO: Get SSH Launcher back to level of sshx in 0.10.2 | |
550 |
|
549 | |||
551 | class SSHLauncher(LocalProcessLauncher): |
|
550 | class SSHLauncher(LocalProcessLauncher): | |
552 | """A minimal launcher for ssh. |
|
551 | """A minimal launcher for ssh. | |
553 |
|
552 | |||
554 | To be useful this will probably have to be extended to use the ``sshx`` |
|
553 | To be useful this will probably have to be extended to use the ``sshx`` | |
555 | idea for environment variables. There could be other things this needs |
|
554 | idea for environment variables. There could be other things this needs | |
556 | as well. |
|
555 | as well. | |
557 | """ |
|
556 | """ | |
558 |
|
557 | |||
559 | ssh_cmd = List(['ssh'], config=True, |
|
558 | ssh_cmd = List(['ssh'], config=True, | |
560 | help="command for starting ssh") |
|
559 | help="command for starting ssh") | |
561 | ssh_args = List(['-tt'], config=True, |
|
560 | ssh_args = List(['-tt'], config=True, | |
562 | help="args to pass to ssh") |
|
561 | help="args to pass to ssh") | |
563 | scp_cmd = List(['scp'], config=True, |
|
562 | scp_cmd = List(['scp'], config=True, | |
564 | help="command for sending files") |
|
563 | help="command for sending files") | |
565 | program = List(['date'], |
|
564 | program = List(['date'], | |
566 | help="Program to launch via ssh") |
|
565 | help="Program to launch via ssh") | |
567 | program_args = List([], |
|
566 | program_args = List([], | |
568 | help="args to pass to remote program") |
|
567 | help="args to pass to remote program") | |
569 | hostname = Unicode('', config=True, |
|
568 | hostname = Unicode('', config=True, | |
570 | help="hostname on which to launch the program") |
|
569 | help="hostname on which to launch the program") | |
571 | user = Unicode('', config=True, |
|
570 | user = Unicode('', config=True, | |
572 | help="username for ssh") |
|
571 | help="username for ssh") | |
573 | location = Unicode('', config=True, |
|
572 | location = Unicode('', config=True, | |
574 | help="user@hostname location for ssh in one setting") |
|
573 | help="user@hostname location for ssh in one setting") | |
575 | to_fetch = List([], config=True, |
|
574 | to_fetch = List([], config=True, | |
576 | help="List of (remote, local) files to fetch after starting") |
|
575 | help="List of (remote, local) files to fetch after starting") | |
577 | to_send = List([], config=True, |
|
576 | to_send = List([], config=True, | |
578 | help="List of (local, remote) files to send before starting") |
|
577 | help="List of (local, remote) files to send before starting") | |
579 |
|
578 | |||
580 | def _hostname_changed(self, name, old, new): |
|
579 | def _hostname_changed(self, name, old, new): | |
581 | if self.user: |
|
580 | if self.user: | |
582 | self.location = u'%s@%s' % (self.user, new) |
|
581 | self.location = u'%s@%s' % (self.user, new) | |
583 | else: |
|
582 | else: | |
584 | self.location = new |
|
583 | self.location = new | |
585 |
|
584 | |||
586 | def _user_changed(self, name, old, new): |
|
585 | def _user_changed(self, name, old, new): | |
587 | self.location = u'%s@%s' % (new, self.hostname) |
|
586 | self.location = u'%s@%s' % (new, self.hostname) | |
588 |
|
587 | |||
589 | def find_args(self): |
|
588 | def find_args(self): | |
590 | return self.ssh_cmd + self.ssh_args + [self.location] + \ |
|
589 | return self.ssh_cmd + self.ssh_args + [self.location] + \ | |
591 | self.program + self.program_args |
|
590 | self.program + self.program_args | |
592 |
|
591 | |||
593 | def _send_file(self, local, remote): |
|
592 | def _send_file(self, local, remote): | |
594 | """send a single file""" |
|
593 | """send a single file""" | |
595 | remote = "%s:%s" % (self.location, remote) |
|
594 | remote = "%s:%s" % (self.location, remote) | |
596 | for i in range(10): |
|
595 | for i in range(10): | |
597 | if not os.path.exists(local): |
|
596 | if not os.path.exists(local): | |
598 | self.log.debug("waiting for %s" % local) |
|
597 | self.log.debug("waiting for %s" % local) | |
599 | time.sleep(1) |
|
598 | time.sleep(1) | |
600 | else: |
|
599 | else: | |
601 | break |
|
600 | break | |
602 | self.log.info("sending %s to %s", local, remote) |
|
601 | self.log.info("sending %s to %s", local, remote) | |
603 | check_output(self.scp_cmd + [local, remote]) |
|
602 | check_output(self.scp_cmd + [local, remote]) | |
604 |
|
603 | |||
605 | def send_files(self): |
|
604 | def send_files(self): | |
606 | """send our files (called before start)""" |
|
605 | """send our files (called before start)""" | |
607 | if not self.to_send: |
|
606 | if not self.to_send: | |
608 | return |
|
607 | return | |
609 | for local_file, remote_file in self.to_send: |
|
608 | for local_file, remote_file in self.to_send: | |
610 | self._send_file(local_file, remote_file) |
|
609 | self._send_file(local_file, remote_file) | |
611 |
|
610 | |||
612 | def _fetch_file(self, remote, local): |
|
611 | def _fetch_file(self, remote, local): | |
613 | """fetch a single file""" |
|
612 | """fetch a single file""" | |
614 | full_remote = "%s:%s" % (self.location, remote) |
|
613 | full_remote = "%s:%s" % (self.location, remote) | |
615 | self.log.info("fetching %s from %s", local, full_remote) |
|
614 | self.log.info("fetching %s from %s", local, full_remote) | |
616 | for i in range(10): |
|
615 | for i in range(10): | |
617 | # wait up to 10s for remote file to exist |
|
616 | # wait up to 10s for remote file to exist | |
618 | check = check_output(self.ssh_cmd + self.ssh_args + \ |
|
617 | check = check_output(self.ssh_cmd + self.ssh_args + \ | |
619 | [self.location, 'test -e', remote, "&& echo 'yes' || echo 'no'"]) |
|
618 | [self.location, 'test -e', remote, "&& echo 'yes' || echo 'no'"]) | |
620 | check = check.strip() |
|
619 | check = check.strip() | |
621 | if check == 'no': |
|
620 | if check == 'no': | |
622 | time.sleep(1) |
|
621 | time.sleep(1) | |
623 | elif check == 'yes': |
|
622 | elif check == 'yes': | |
624 | break |
|
623 | break | |
625 | check_output(self.scp_cmd + [full_remote, local]) |
|
624 | check_output(self.scp_cmd + [full_remote, local]) | |
626 |
|
625 | |||
627 | def fetch_files(self): |
|
626 | def fetch_files(self): | |
628 | """fetch remote files (called after start)""" |
|
627 | """fetch remote files (called after start)""" | |
629 | if not self.to_fetch: |
|
628 | if not self.to_fetch: | |
630 | return |
|
629 | return | |
631 | for remote_file, local_file in self.to_fetch: |
|
630 | for remote_file, local_file in self.to_fetch: | |
632 | self._fetch_file(remote_file, local_file) |
|
631 | self._fetch_file(remote_file, local_file) | |
633 |
|
632 | |||
634 | def start(self, hostname=None, user=None): |
|
633 | def start(self, hostname=None, user=None): | |
635 | if hostname is not None: |
|
634 | if hostname is not None: | |
636 | self.hostname = hostname |
|
635 | self.hostname = hostname | |
637 | if user is not None: |
|
636 | if user is not None: | |
638 | self.user = user |
|
637 | self.user = user | |
639 |
|
638 | |||
640 | self.send_files() |
|
639 | self.send_files() | |
641 | super(SSHLauncher, self).start() |
|
640 | super(SSHLauncher, self).start() | |
642 | self.fetch_files() |
|
641 | self.fetch_files() | |
643 |
|
642 | |||
644 | def signal(self, sig): |
|
643 | def signal(self, sig): | |
645 | if self.state == 'running': |
|
644 | if self.state == 'running': | |
646 | # send escaped ssh connection-closer |
|
645 | # send escaped ssh connection-closer | |
647 | self.process.stdin.write('~.') |
|
646 | self.process.stdin.write('~.') | |
648 | self.process.stdin.flush() |
|
647 | self.process.stdin.flush() | |
649 |
|
648 | |||
650 | class SSHClusterLauncher(SSHLauncher): |
|
649 | class SSHClusterLauncher(SSHLauncher): | |
651 |
|
650 | |||
652 | remote_profile_dir = Unicode('', config=True, |
|
651 | remote_profile_dir = Unicode('', config=True, | |
653 | help="""The remote profile_dir to use. |
|
652 | help="""The remote profile_dir to use. | |
654 |
|
653 | |||
655 | If not specified, use calling profile, stripping out possible leading homedir. |
|
654 | If not specified, use calling profile, stripping out possible leading homedir. | |
656 | """) |
|
655 | """) | |
657 |
|
656 | |||
658 | def _remote_profie_dir_default(self): |
|
657 | def _remote_profie_dir_default(self): | |
659 | """turns /home/you/.ipython/profile_foo into .ipython/profile_foo |
|
658 | """turns /home/you/.ipython/profile_foo into .ipython/profile_foo | |
660 | """ |
|
659 | """ | |
661 | home = get_home_dir() |
|
660 | home = get_home_dir() | |
662 | if not home.endswith('/'): |
|
661 | if not home.endswith('/'): | |
663 | home = home+'/' |
|
662 | home = home+'/' | |
664 |
|
663 | |||
665 | if self.profile_dir.startswith(home): |
|
664 | if self.profile_dir.startswith(home): | |
666 | return self.profile_dir[len(home):] |
|
665 | return self.profile_dir[len(home):] | |
667 | else: |
|
666 | else: | |
668 | return self.profile_dir |
|
667 | return self.profile_dir | |
669 |
|
668 | |||
670 | def _cluster_id_changed(self, name, old, new): |
|
669 | def _cluster_id_changed(self, name, old, new): | |
671 | if new: |
|
670 | if new: | |
672 | raise ValueError("cluster id not supported by SSH launchers") |
|
671 | raise ValueError("cluster id not supported by SSH launchers") | |
673 |
|
672 | |||
674 | @property |
|
673 | @property | |
675 | def cluster_args(self): |
|
674 | def cluster_args(self): | |
676 | return ['--profile-dir', self.remote_profile_dir] |
|
675 | return ['--profile-dir', self.remote_profile_dir] | |
677 |
|
676 | |||
678 | class SSHControllerLauncher(SSHClusterLauncher, ControllerMixin): |
|
677 | class SSHControllerLauncher(SSHClusterLauncher, ControllerMixin): | |
679 |
|
678 | |||
680 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
679 | # alias back to *non-configurable* program[_args] for use in find_args() | |
681 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
680 | # this way all Controller/EngineSetLaunchers have the same form, rather | |
682 | # than *some* having `program_args` and others `controller_args` |
|
681 | # than *some* having `program_args` and others `controller_args` | |
683 |
|
682 | |||
684 | def _controller_cmd_default(self): |
|
683 | def _controller_cmd_default(self): | |
685 | return ['ipcontroller'] |
|
684 | return ['ipcontroller'] | |
686 |
|
685 | |||
687 | @property |
|
686 | @property | |
688 | def program(self): |
|
687 | def program(self): | |
689 | return self.controller_cmd |
|
688 | return self.controller_cmd | |
690 |
|
689 | |||
691 | @property |
|
690 | @property | |
692 | def program_args(self): |
|
691 | def program_args(self): | |
693 | return self.cluster_args + self.controller_args |
|
692 | return self.cluster_args + self.controller_args | |
694 |
|
693 | |||
695 | def _to_fetch_default(self): |
|
694 | def _to_fetch_default(self): | |
696 | return [ |
|
695 | return [ | |
697 | (os.path.join(self.remote_profile_dir, 'security', cf), |
|
696 | (os.path.join(self.remote_profile_dir, 'security', cf), | |
698 | os.path.join(self.profile_dir, 'security', cf),) |
|
697 | os.path.join(self.profile_dir, 'security', cf),) | |
699 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') |
|
698 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') | |
700 | ] |
|
699 | ] | |
701 |
|
700 | |||
702 | class SSHEngineLauncher(SSHClusterLauncher, EngineMixin): |
|
701 | class SSHEngineLauncher(SSHClusterLauncher, EngineMixin): | |
703 |
|
702 | |||
704 | # alias back to *non-configurable* program[_args] for use in find_args() |
|
703 | # alias back to *non-configurable* program[_args] for use in find_args() | |
705 | # this way all Controller/EngineSetLaunchers have the same form, rather |
|
704 | # this way all Controller/EngineSetLaunchers have the same form, rather | |
706 | # than *some* having `program_args` and others `controller_args` |
|
705 | # than *some* having `program_args` and others `controller_args` | |
707 |
|
706 | |||
708 | def _engine_cmd_default(self): |
|
707 | def _engine_cmd_default(self): | |
709 | return ['ipengine'] |
|
708 | return ['ipengine'] | |
710 |
|
709 | |||
711 | @property |
|
710 | @property | |
712 | def program(self): |
|
711 | def program(self): | |
713 | return self.engine_cmd |
|
712 | return self.engine_cmd | |
714 |
|
713 | |||
715 | @property |
|
714 | @property | |
716 | def program_args(self): |
|
715 | def program_args(self): | |
717 | return self.cluster_args + self.engine_args |
|
716 | return self.cluster_args + self.engine_args | |
718 |
|
717 | |||
719 | def _to_send_default(self): |
|
718 | def _to_send_default(self): | |
720 | return [ |
|
719 | return [ | |
721 | (os.path.join(self.profile_dir, 'security', cf), |
|
720 | (os.path.join(self.profile_dir, 'security', cf), | |
722 | os.path.join(self.remote_profile_dir, 'security', cf)) |
|
721 | os.path.join(self.remote_profile_dir, 'security', cf)) | |
723 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') |
|
722 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') | |
724 | ] |
|
723 | ] | |
725 |
|
724 | |||
726 |
|
725 | |||
727 | class SSHEngineSetLauncher(LocalEngineSetLauncher): |
|
726 | class SSHEngineSetLauncher(LocalEngineSetLauncher): | |
728 | launcher_class = SSHEngineLauncher |
|
727 | launcher_class = SSHEngineLauncher | |
729 | engines = Dict(config=True, |
|
728 | engines = Dict(config=True, | |
730 | help="""dict of engines to launch. This is a dict by hostname of ints, |
|
729 | help="""dict of engines to launch. This is a dict by hostname of ints, | |
731 | corresponding to the number of engines to start on that host.""") |
|
730 | corresponding to the number of engines to start on that host.""") | |
732 |
|
731 | |||
733 | @property |
|
732 | @property | |
734 | def engine_count(self): |
|
733 | def engine_count(self): | |
735 | """determine engine count from `engines` dict""" |
|
734 | """determine engine count from `engines` dict""" | |
736 | count = 0 |
|
735 | count = 0 | |
737 | for n in self.engines.itervalues(): |
|
736 | for n in self.engines.itervalues(): | |
738 | if isinstance(n, (tuple,list)): |
|
737 | if isinstance(n, (tuple,list)): | |
739 | n,args = n |
|
738 | n,args = n | |
740 | count += n |
|
739 | count += n | |
741 | return count |
|
740 | return count | |
742 |
|
741 | |||
743 | def start(self, n): |
|
742 | def start(self, n): | |
744 | """Start engines by profile or profile_dir. |
|
743 | """Start engines by profile or profile_dir. | |
745 | `n` is ignored, and the `engines` config property is used instead. |
|
744 | `n` is ignored, and the `engines` config property is used instead. | |
746 | """ |
|
745 | """ | |
747 |
|
746 | |||
748 | dlist = [] |
|
747 | dlist = [] | |
749 | for host, n in self.engines.iteritems(): |
|
748 | for host, n in self.engines.iteritems(): | |
750 | if isinstance(n, (tuple, list)): |
|
749 | if isinstance(n, (tuple, list)): | |
751 | n, args = n |
|
750 | n, args = n | |
752 | else: |
|
751 | else: | |
753 | args = copy.deepcopy(self.engine_args) |
|
752 | args = copy.deepcopy(self.engine_args) | |
754 |
|
753 | |||
755 | if '@' in host: |
|
754 | if '@' in host: | |
756 | user,host = host.split('@',1) |
|
755 | user,host = host.split('@',1) | |
757 | else: |
|
756 | else: | |
758 | user=None |
|
757 | user=None | |
759 | for i in range(n): |
|
758 | for i in range(n): | |
760 | if i > 0: |
|
759 | if i > 0: | |
761 | time.sleep(self.delay) |
|
760 | time.sleep(self.delay) | |
762 | el = self.launcher_class(work_dir=self.work_dir, config=self.config, log=self.log, |
|
761 | el = self.launcher_class(work_dir=self.work_dir, config=self.config, log=self.log, | |
763 | profile_dir=self.profile_dir, cluster_id=self.cluster_id, |
|
762 | profile_dir=self.profile_dir, cluster_id=self.cluster_id, | |
764 | ) |
|
763 | ) | |
765 | if i > 0: |
|
764 | if i > 0: | |
766 | # only send files for the first engine on each host |
|
765 | # only send files for the first engine on each host | |
767 | el.to_send = [] |
|
766 | el.to_send = [] | |
768 |
|
767 | |||
769 | # Copy the engine args over to each engine launcher. |
|
768 | # Copy the engine args over to each engine launcher. | |
770 | el.engine_cmd = self.engine_cmd |
|
769 | el.engine_cmd = self.engine_cmd | |
771 | el.engine_args = args |
|
770 | el.engine_args = args | |
772 | el.on_stop(self._notice_engine_stopped) |
|
771 | el.on_stop(self._notice_engine_stopped) | |
773 | d = el.start(user=user, hostname=host) |
|
772 | d = el.start(user=user, hostname=host) | |
774 | self.launchers[ "%s/%i" % (host,i) ] = el |
|
773 | self.launchers[ "%s/%i" % (host,i) ] = el | |
775 | dlist.append(d) |
|
774 | dlist.append(d) | |
776 | self.notify_start(dlist) |
|
775 | self.notify_start(dlist) | |
777 | return dlist |
|
776 | return dlist | |
778 |
|
777 | |||
779 |
|
778 | |||
780 | class SSHProxyEngineSetLauncher(SSHClusterLauncher): |
|
779 | class SSHProxyEngineSetLauncher(SSHClusterLauncher): | |
781 | """Launcher for calling |
|
780 | """Launcher for calling | |
782 | `ipcluster engines` on a remote machine. |
|
781 | `ipcluster engines` on a remote machine. | |
783 |
|
782 | |||
784 | Requires that remote profile is already configured. |
|
783 | Requires that remote profile is already configured. | |
785 | """ |
|
784 | """ | |
786 |
|
785 | |||
787 | n = Integer() |
|
786 | n = Integer() | |
788 | ipcluster_cmd = List(['ipcluster'], config=True) |
|
787 | ipcluster_cmd = List(['ipcluster'], config=True) | |
789 |
|
788 | |||
790 | @property |
|
789 | @property | |
791 | def program(self): |
|
790 | def program(self): | |
792 | return self.ipcluster_cmd + ['engines'] |
|
791 | return self.ipcluster_cmd + ['engines'] | |
793 |
|
792 | |||
794 | @property |
|
793 | @property | |
795 | def program_args(self): |
|
794 | def program_args(self): | |
796 | return ['-n', str(self.n), '--profile-dir', self.remote_profile_dir] |
|
795 | return ['-n', str(self.n), '--profile-dir', self.remote_profile_dir] | |
797 |
|
796 | |||
798 | def _to_send_default(self): |
|
797 | def _to_send_default(self): | |
799 | return [ |
|
798 | return [ | |
800 | (os.path.join(self.profile_dir, 'security', cf), |
|
799 | (os.path.join(self.profile_dir, 'security', cf), | |
801 | os.path.join(self.remote_profile_dir, 'security', cf)) |
|
800 | os.path.join(self.remote_profile_dir, 'security', cf)) | |
802 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') |
|
801 | for cf in ('ipcontroller-client.json', 'ipcontroller-engine.json') | |
803 | ] |
|
802 | ] | |
804 |
|
803 | |||
805 | def start(self, n): |
|
804 | def start(self, n): | |
806 | self.n = n |
|
805 | self.n = n | |
807 | super(SSHProxyEngineSetLauncher, self).start() |
|
806 | super(SSHProxyEngineSetLauncher, self).start() | |
808 |
|
807 | |||
809 |
|
808 | |||
810 | #----------------------------------------------------------------------------- |
|
809 | #----------------------------------------------------------------------------- | |
811 | # Windows HPC Server 2008 scheduler launchers |
|
810 | # Windows HPC Server 2008 scheduler launchers | |
812 | #----------------------------------------------------------------------------- |
|
811 | #----------------------------------------------------------------------------- | |
813 |
|
812 | |||
814 |
|
813 | |||
815 | # This is only used on Windows. |
|
814 | # This is only used on Windows. | |
816 | def find_job_cmd(): |
|
815 | def find_job_cmd(): | |
817 | if WINDOWS: |
|
816 | if WINDOWS: | |
818 | try: |
|
817 | try: | |
819 | return find_cmd('job') |
|
818 | return find_cmd('job') | |
820 | except (FindCmdError, ImportError): |
|
819 | except (FindCmdError, ImportError): | |
821 | # ImportError will be raised if win32api is not installed |
|
820 | # ImportError will be raised if win32api is not installed | |
822 | return 'job' |
|
821 | return 'job' | |
823 | else: |
|
822 | else: | |
824 | return 'job' |
|
823 | return 'job' | |
825 |
|
824 | |||
826 |
|
825 | |||
827 | class WindowsHPCLauncher(BaseLauncher): |
|
826 | class WindowsHPCLauncher(BaseLauncher): | |
828 |
|
827 | |||
829 |
job_id_regexp = |
|
828 | job_id_regexp = CRegExp(r'\d+', config=True, | |
830 | help="""A regular expression used to get the job id from the output of the |
|
829 | help="""A regular expression used to get the job id from the output of the | |
831 | submit_command. """ |
|
830 | submit_command. """ | |
832 | ) |
|
831 | ) | |
833 | job_file_name = Unicode(u'ipython_job.xml', config=True, |
|
832 | job_file_name = Unicode(u'ipython_job.xml', config=True, | |
834 | help="The filename of the instantiated job script.") |
|
833 | help="The filename of the instantiated job script.") | |
835 | # The full path to the instantiated job script. This gets made dynamically |
|
834 | # The full path to the instantiated job script. This gets made dynamically | |
836 | # by combining the work_dir with the job_file_name. |
|
835 | # by combining the work_dir with the job_file_name. | |
837 | job_file = Unicode(u'') |
|
836 | job_file = Unicode(u'') | |
838 | scheduler = Unicode('', config=True, |
|
837 | scheduler = Unicode('', config=True, | |
839 | help="The hostname of the scheduler to submit the job to.") |
|
838 | help="The hostname of the scheduler to submit the job to.") | |
840 | job_cmd = Unicode(find_job_cmd(), config=True, |
|
839 | job_cmd = Unicode(find_job_cmd(), config=True, | |
841 | help="The command for submitting jobs.") |
|
840 | help="The command for submitting jobs.") | |
842 |
|
841 | |||
843 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
842 | def __init__(self, work_dir=u'.', config=None, **kwargs): | |
844 | super(WindowsHPCLauncher, self).__init__( |
|
843 | super(WindowsHPCLauncher, self).__init__( | |
845 | work_dir=work_dir, config=config, **kwargs |
|
844 | work_dir=work_dir, config=config, **kwargs | |
846 | ) |
|
845 | ) | |
847 |
|
846 | |||
848 | @property |
|
847 | @property | |
849 | def job_file(self): |
|
848 | def job_file(self): | |
850 | return os.path.join(self.work_dir, self.job_file_name) |
|
849 | return os.path.join(self.work_dir, self.job_file_name) | |
851 |
|
850 | |||
852 | def write_job_file(self, n): |
|
851 | def write_job_file(self, n): | |
853 | raise NotImplementedError("Implement write_job_file in a subclass.") |
|
852 | raise NotImplementedError("Implement write_job_file in a subclass.") | |
854 |
|
853 | |||
855 | def find_args(self): |
|
854 | def find_args(self): | |
856 | return [u'job.exe'] |
|
855 | return [u'job.exe'] | |
857 |
|
856 | |||
858 | def parse_job_id(self, output): |
|
857 | def parse_job_id(self, output): | |
859 | """Take the output of the submit command and return the job id.""" |
|
858 | """Take the output of the submit command and return the job id.""" | |
860 |
m = re.search( |
|
859 | m = self.job_id_regexp.search(output) | |
861 | if m is not None: |
|
860 | if m is not None: | |
862 | job_id = m.group() |
|
861 | job_id = m.group() | |
863 | else: |
|
862 | else: | |
864 | raise LauncherError("Job id couldn't be determined: %s" % output) |
|
863 | raise LauncherError("Job id couldn't be determined: %s" % output) | |
865 | self.job_id = job_id |
|
864 | self.job_id = job_id | |
866 | self.log.info('Job started with id: %r', job_id) |
|
865 | self.log.info('Job started with id: %r', job_id) | |
867 | return job_id |
|
866 | return job_id | |
868 |
|
867 | |||
869 | def start(self, n): |
|
868 | def start(self, n): | |
870 | """Start n copies of the process using the Win HPC job scheduler.""" |
|
869 | """Start n copies of the process using the Win HPC job scheduler.""" | |
871 | self.write_job_file(n) |
|
870 | self.write_job_file(n) | |
872 | args = [ |
|
871 | args = [ | |
873 | 'submit', |
|
872 | 'submit', | |
874 | '/jobfile:%s' % self.job_file, |
|
873 | '/jobfile:%s' % self.job_file, | |
875 | '/scheduler:%s' % self.scheduler |
|
874 | '/scheduler:%s' % self.scheduler | |
876 | ] |
|
875 | ] | |
877 | self.log.debug("Starting Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),)) |
|
876 | self.log.debug("Starting Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),)) | |
878 |
|
877 | |||
879 | output = check_output([self.job_cmd]+args, |
|
878 | output = check_output([self.job_cmd]+args, | |
880 | env=os.environ, |
|
879 | env=os.environ, | |
881 | cwd=self.work_dir, |
|
880 | cwd=self.work_dir, | |
882 | stderr=STDOUT |
|
881 | stderr=STDOUT | |
883 | ) |
|
882 | ) | |
884 | job_id = self.parse_job_id(output) |
|
883 | job_id = self.parse_job_id(output) | |
885 | self.notify_start(job_id) |
|
884 | self.notify_start(job_id) | |
886 | return job_id |
|
885 | return job_id | |
887 |
|
886 | |||
888 | def stop(self): |
|
887 | def stop(self): | |
889 | args = [ |
|
888 | args = [ | |
890 | 'cancel', |
|
889 | 'cancel', | |
891 | self.job_id, |
|
890 | self.job_id, | |
892 | '/scheduler:%s' % self.scheduler |
|
891 | '/scheduler:%s' % self.scheduler | |
893 | ] |
|
892 | ] | |
894 | self.log.info("Stopping Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),)) |
|
893 | self.log.info("Stopping Win HPC Job: %s" % (self.job_cmd + ' ' + ' '.join(args),)) | |
895 | try: |
|
894 | try: | |
896 | output = check_output([self.job_cmd]+args, |
|
895 | output = check_output([self.job_cmd]+args, | |
897 | env=os.environ, |
|
896 | env=os.environ, | |
898 | cwd=self.work_dir, |
|
897 | cwd=self.work_dir, | |
899 | stderr=STDOUT |
|
898 | stderr=STDOUT | |
900 | ) |
|
899 | ) | |
901 | except: |
|
900 | except: | |
902 | output = 'The job already appears to be stoppped: %r' % self.job_id |
|
901 | output = 'The job already appears to be stoppped: %r' % self.job_id | |
903 | self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd |
|
902 | self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd | |
904 | return output |
|
903 | return output | |
905 |
|
904 | |||
906 |
|
905 | |||
907 | class WindowsHPCControllerLauncher(WindowsHPCLauncher, ClusterAppMixin): |
|
906 | class WindowsHPCControllerLauncher(WindowsHPCLauncher, ClusterAppMixin): | |
908 |
|
907 | |||
909 | job_file_name = Unicode(u'ipcontroller_job.xml', config=True, |
|
908 | job_file_name = Unicode(u'ipcontroller_job.xml', config=True, | |
910 | help="WinHPC xml job file.") |
|
909 | help="WinHPC xml job file.") | |
911 | controller_args = List([], config=False, |
|
910 | controller_args = List([], config=False, | |
912 | help="extra args to pass to ipcontroller") |
|
911 | help="extra args to pass to ipcontroller") | |
913 |
|
912 | |||
914 | def write_job_file(self, n): |
|
913 | def write_job_file(self, n): | |
915 | job = IPControllerJob(config=self.config) |
|
914 | job = IPControllerJob(config=self.config) | |
916 |
|
915 | |||
917 | t = IPControllerTask(config=self.config) |
|
916 | t = IPControllerTask(config=self.config) | |
918 | # The tasks work directory is *not* the actual work directory of |
|
917 | # The tasks work directory is *not* the actual work directory of | |
919 | # the controller. It is used as the base path for the stdout/stderr |
|
918 | # the controller. It is used as the base path for the stdout/stderr | |
920 | # files that the scheduler redirects to. |
|
919 | # files that the scheduler redirects to. | |
921 | t.work_directory = self.profile_dir |
|
920 | t.work_directory = self.profile_dir | |
922 | # Add the profile_dir and from self.start(). |
|
921 | # Add the profile_dir and from self.start(). | |
923 | t.controller_args.extend(self.cluster_args) |
|
922 | t.controller_args.extend(self.cluster_args) | |
924 | t.controller_args.extend(self.controller_args) |
|
923 | t.controller_args.extend(self.controller_args) | |
925 | job.add_task(t) |
|
924 | job.add_task(t) | |
926 |
|
925 | |||
927 | self.log.debug("Writing job description file: %s", self.job_file) |
|
926 | self.log.debug("Writing job description file: %s", self.job_file) | |
928 | job.write(self.job_file) |
|
927 | job.write(self.job_file) | |
929 |
|
928 | |||
930 | @property |
|
929 | @property | |
931 | def job_file(self): |
|
930 | def job_file(self): | |
932 | return os.path.join(self.profile_dir, self.job_file_name) |
|
931 | return os.path.join(self.profile_dir, self.job_file_name) | |
933 |
|
932 | |||
934 | def start(self): |
|
933 | def start(self): | |
935 | """Start the controller by profile_dir.""" |
|
934 | """Start the controller by profile_dir.""" | |
936 | return super(WindowsHPCControllerLauncher, self).start(1) |
|
935 | return super(WindowsHPCControllerLauncher, self).start(1) | |
937 |
|
936 | |||
938 |
|
937 | |||
939 | class WindowsHPCEngineSetLauncher(WindowsHPCLauncher, ClusterAppMixin): |
|
938 | class WindowsHPCEngineSetLauncher(WindowsHPCLauncher, ClusterAppMixin): | |
940 |
|
939 | |||
941 | job_file_name = Unicode(u'ipengineset_job.xml', config=True, |
|
940 | job_file_name = Unicode(u'ipengineset_job.xml', config=True, | |
942 | help="jobfile for ipengines job") |
|
941 | help="jobfile for ipengines job") | |
943 | engine_args = List([], config=False, |
|
942 | engine_args = List([], config=False, | |
944 | help="extra args to pas to ipengine") |
|
943 | help="extra args to pas to ipengine") | |
945 |
|
944 | |||
946 | def write_job_file(self, n): |
|
945 | def write_job_file(self, n): | |
947 | job = IPEngineSetJob(config=self.config) |
|
946 | job = IPEngineSetJob(config=self.config) | |
948 |
|
947 | |||
949 | for i in range(n): |
|
948 | for i in range(n): | |
950 | t = IPEngineTask(config=self.config) |
|
949 | t = IPEngineTask(config=self.config) | |
951 | # The tasks work directory is *not* the actual work directory of |
|
950 | # The tasks work directory is *not* the actual work directory of | |
952 | # the engine. It is used as the base path for the stdout/stderr |
|
951 | # the engine. It is used as the base path for the stdout/stderr | |
953 | # files that the scheduler redirects to. |
|
952 | # files that the scheduler redirects to. | |
954 | t.work_directory = self.profile_dir |
|
953 | t.work_directory = self.profile_dir | |
955 | # Add the profile_dir and from self.start(). |
|
954 | # Add the profile_dir and from self.start(). | |
956 | t.engine_args.extend(self.cluster_args) |
|
955 | t.engine_args.extend(self.cluster_args) | |
957 | t.engine_args.extend(self.engine_args) |
|
956 | t.engine_args.extend(self.engine_args) | |
958 | job.add_task(t) |
|
957 | job.add_task(t) | |
959 |
|
958 | |||
960 | self.log.debug("Writing job description file: %s", self.job_file) |
|
959 | self.log.debug("Writing job description file: %s", self.job_file) | |
961 | job.write(self.job_file) |
|
960 | job.write(self.job_file) | |
962 |
|
961 | |||
963 | @property |
|
962 | @property | |
964 | def job_file(self): |
|
963 | def job_file(self): | |
965 | return os.path.join(self.profile_dir, self.job_file_name) |
|
964 | return os.path.join(self.profile_dir, self.job_file_name) | |
966 |
|
965 | |||
967 | def start(self, n): |
|
966 | def start(self, n): | |
968 | """Start the controller by profile_dir.""" |
|
967 | """Start the controller by profile_dir.""" | |
969 | return super(WindowsHPCEngineSetLauncher, self).start(n) |
|
968 | return super(WindowsHPCEngineSetLauncher, self).start(n) | |
970 |
|
969 | |||
971 |
|
970 | |||
972 | #----------------------------------------------------------------------------- |
|
971 | #----------------------------------------------------------------------------- | |
973 | # Batch (PBS) system launchers |
|
972 | # Batch (PBS) system launchers | |
974 | #----------------------------------------------------------------------------- |
|
973 | #----------------------------------------------------------------------------- | |
975 |
|
974 | |||
976 | class BatchClusterAppMixin(ClusterAppMixin): |
|
975 | class BatchClusterAppMixin(ClusterAppMixin): | |
977 | """ClusterApp mixin that updates the self.context dict, rather than cl-args.""" |
|
976 | """ClusterApp mixin that updates the self.context dict, rather than cl-args.""" | |
978 | def _profile_dir_changed(self, name, old, new): |
|
977 | def _profile_dir_changed(self, name, old, new): | |
979 | self.context[name] = new |
|
978 | self.context[name] = new | |
980 | _cluster_id_changed = _profile_dir_changed |
|
979 | _cluster_id_changed = _profile_dir_changed | |
981 |
|
980 | |||
982 | def _profile_dir_default(self): |
|
981 | def _profile_dir_default(self): | |
983 | self.context['profile_dir'] = '' |
|
982 | self.context['profile_dir'] = '' | |
984 | return '' |
|
983 | return '' | |
985 | def _cluster_id_default(self): |
|
984 | def _cluster_id_default(self): | |
986 | self.context['cluster_id'] = '' |
|
985 | self.context['cluster_id'] = '' | |
987 | return '' |
|
986 | return '' | |
988 |
|
987 | |||
989 |
|
988 | |||
990 | class BatchSystemLauncher(BaseLauncher): |
|
989 | class BatchSystemLauncher(BaseLauncher): | |
991 | """Launch an external process using a batch system. |
|
990 | """Launch an external process using a batch system. | |
992 |
|
991 | |||
993 | This class is designed to work with UNIX batch systems like PBS, LSF, |
|
992 | This class is designed to work with UNIX batch systems like PBS, LSF, | |
994 | GridEngine, etc. The overall model is that there are different commands |
|
993 | GridEngine, etc. The overall model is that there are different commands | |
995 | like qsub, qdel, etc. that handle the starting and stopping of the process. |
|
994 | like qsub, qdel, etc. that handle the starting and stopping of the process. | |
996 |
|
995 | |||
997 | This class also has the notion of a batch script. The ``batch_template`` |
|
996 | This class also has the notion of a batch script. The ``batch_template`` | |
998 | attribute can be set to a string that is a template for the batch script. |
|
997 | attribute can be set to a string that is a template for the batch script. | |
999 | This template is instantiated using string formatting. Thus the template can |
|
998 | This template is instantiated using string formatting. Thus the template can | |
1000 | use {n} fot the number of instances. Subclasses can add additional variables |
|
999 | use {n} fot the number of instances. Subclasses can add additional variables | |
1001 | to the template dict. |
|
1000 | to the template dict. | |
1002 | """ |
|
1001 | """ | |
1003 |
|
1002 | |||
1004 | # Subclasses must fill these in. See PBSEngineSet |
|
1003 | # Subclasses must fill these in. See PBSEngineSet | |
1005 | submit_command = List([''], config=True, |
|
1004 | submit_command = List([''], config=True, | |
1006 | help="The name of the command line program used to submit jobs.") |
|
1005 | help="The name of the command line program used to submit jobs.") | |
1007 | delete_command = List([''], config=True, |
|
1006 | delete_command = List([''], config=True, | |
1008 | help="The name of the command line program used to delete jobs.") |
|
1007 | help="The name of the command line program used to delete jobs.") | |
1009 |
job_id_regexp = |
|
1008 | job_id_regexp = CRegExp('', config=True, | |
1010 | help="""A regular expression used to get the job id from the output of the |
|
1009 | help="""A regular expression used to get the job id from the output of the | |
1011 | submit_command.""") |
|
1010 | submit_command.""") | |
1012 | batch_template = Unicode('', config=True, |
|
1011 | batch_template = Unicode('', config=True, | |
1013 | help="The string that is the batch script template itself.") |
|
1012 | help="The string that is the batch script template itself.") | |
1014 | batch_template_file = Unicode(u'', config=True, |
|
1013 | batch_template_file = Unicode(u'', config=True, | |
1015 | help="The file that contains the batch template.") |
|
1014 | help="The file that contains the batch template.") | |
1016 | batch_file_name = Unicode(u'batch_script', config=True, |
|
1015 | batch_file_name = Unicode(u'batch_script', config=True, | |
1017 | help="The filename of the instantiated batch script.") |
|
1016 | help="The filename of the instantiated batch script.") | |
1018 | queue = Unicode(u'', config=True, |
|
1017 | queue = Unicode(u'', config=True, | |
1019 | help="The PBS Queue.") |
|
1018 | help="The PBS Queue.") | |
1020 |
|
1019 | |||
1021 | def _queue_changed(self, name, old, new): |
|
1020 | def _queue_changed(self, name, old, new): | |
1022 | self.context[name] = new |
|
1021 | self.context[name] = new | |
1023 |
|
1022 | |||
1024 | n = Integer(1) |
|
1023 | n = Integer(1) | |
1025 | _n_changed = _queue_changed |
|
1024 | _n_changed = _queue_changed | |
1026 |
|
1025 | |||
1027 | # not configurable, override in subclasses |
|
1026 | # not configurable, override in subclasses | |
1028 | # PBS Job Array regex |
|
1027 | # PBS Job Array regex | |
1029 |
job_array_regexp = |
|
1028 | job_array_regexp = CRegExp('') | |
1030 | job_array_template = Unicode('') |
|
1029 | job_array_template = Unicode('') | |
1031 | # PBS Queue regex |
|
1030 | # PBS Queue regex | |
1032 |
queue_regexp = |
|
1031 | queue_regexp = CRegExp('') | |
1033 | queue_template = Unicode('') |
|
1032 | queue_template = Unicode('') | |
1034 | # The default batch template, override in subclasses |
|
1033 | # The default batch template, override in subclasses | |
1035 | default_template = Unicode('') |
|
1034 | default_template = Unicode('') | |
1036 | # The full path to the instantiated batch script. |
|
1035 | # The full path to the instantiated batch script. | |
1037 | batch_file = Unicode(u'') |
|
1036 | batch_file = Unicode(u'') | |
1038 | # the format dict used with batch_template: |
|
1037 | # the format dict used with batch_template: | |
1039 | context = Dict() |
|
1038 | context = Dict() | |
1040 | def _context_default(self): |
|
1039 | def _context_default(self): | |
1041 | """load the default context with the default values for the basic keys |
|
1040 | """load the default context with the default values for the basic keys | |
1042 |
|
1041 | |||
1043 | because the _trait_changed methods only load the context if they |
|
1042 | because the _trait_changed methods only load the context if they | |
1044 | are set to something other than the default value. |
|
1043 | are set to something other than the default value. | |
1045 | """ |
|
1044 | """ | |
1046 | return dict(n=1, queue=u'', profile_dir=u'', cluster_id=u'') |
|
1045 | return dict(n=1, queue=u'', profile_dir=u'', cluster_id=u'') | |
1047 |
|
1046 | |||
1048 | # the Formatter instance for rendering the templates: |
|
1047 | # the Formatter instance for rendering the templates: | |
1049 | formatter = Instance(EvalFormatter, (), {}) |
|
1048 | formatter = Instance(EvalFormatter, (), {}) | |
1050 |
|
1049 | |||
1051 |
|
1050 | |||
1052 | def find_args(self): |
|
1051 | def find_args(self): | |
1053 | return self.submit_command + [self.batch_file] |
|
1052 | return self.submit_command + [self.batch_file] | |
1054 |
|
1053 | |||
1055 | def __init__(self, work_dir=u'.', config=None, **kwargs): |
|
1054 | def __init__(self, work_dir=u'.', config=None, **kwargs): | |
1056 | super(BatchSystemLauncher, self).__init__( |
|
1055 | super(BatchSystemLauncher, self).__init__( | |
1057 | work_dir=work_dir, config=config, **kwargs |
|
1056 | work_dir=work_dir, config=config, **kwargs | |
1058 | ) |
|
1057 | ) | |
1059 | self.batch_file = os.path.join(self.work_dir, self.batch_file_name) |
|
1058 | self.batch_file = os.path.join(self.work_dir, self.batch_file_name) | |
1060 |
|
1059 | |||
1061 | def parse_job_id(self, output): |
|
1060 | def parse_job_id(self, output): | |
1062 | """Take the output of the submit command and return the job id.""" |
|
1061 | """Take the output of the submit command and return the job id.""" | |
1063 |
m = re.search( |
|
1062 | m = self.job_id_regexp.search(output) | |
1064 | if m is not None: |
|
1063 | if m is not None: | |
1065 | job_id = m.group() |
|
1064 | job_id = m.group() | |
1066 | else: |
|
1065 | else: | |
1067 | raise LauncherError("Job id couldn't be determined: %s" % output) |
|
1066 | raise LauncherError("Job id couldn't be determined: %s" % output) | |
1068 | self.job_id = job_id |
|
1067 | self.job_id = job_id | |
1069 | self.log.info('Job submitted with job id: %r', job_id) |
|
1068 | self.log.info('Job submitted with job id: %r', job_id) | |
1070 | return job_id |
|
1069 | return job_id | |
1071 |
|
1070 | |||
1072 | def write_batch_script(self, n): |
|
1071 | def write_batch_script(self, n): | |
1073 | """Instantiate and write the batch script to the work_dir.""" |
|
1072 | """Instantiate and write the batch script to the work_dir.""" | |
1074 | self.n = n |
|
1073 | self.n = n | |
1075 | # first priority is batch_template if set |
|
1074 | # first priority is batch_template if set | |
1076 | if self.batch_template_file and not self.batch_template: |
|
1075 | if self.batch_template_file and not self.batch_template: | |
1077 | # second priority is batch_template_file |
|
1076 | # second priority is batch_template_file | |
1078 | with open(self.batch_template_file) as f: |
|
1077 | with open(self.batch_template_file) as f: | |
1079 | self.batch_template = f.read() |
|
1078 | self.batch_template = f.read() | |
1080 | if not self.batch_template: |
|
1079 | if not self.batch_template: | |
1081 | # third (last) priority is default_template |
|
1080 | # third (last) priority is default_template | |
1082 | self.batch_template = self.default_template |
|
1081 | self.batch_template = self.default_template | |
1083 |
|
1082 | |||
1084 | # add jobarray or queue lines to user-specified template |
|
1083 | # add jobarray or queue lines to user-specified template | |
1085 | # note that this is *only* when user did not specify a template. |
|
1084 | # note that this is *only* when user did not specify a template. | |
1086 | regex = re.compile(self.job_array_regexp) |
|
1085 | # print self.job_array_regexp.search(self.batch_template) | |
1087 |
|
|
1086 | if not self.job_array_regexp.search(self.batch_template): | |
1088 | if not regex.search(self.batch_template): |
|
|||
1089 | self.log.debug("adding job array settings to batch script") |
|
1087 | self.log.debug("adding job array settings to batch script") | |
1090 | firstline, rest = self.batch_template.split('\n',1) |
|
1088 | firstline, rest = self.batch_template.split('\n',1) | |
1091 | self.batch_template = u'\n'.join([firstline, self.job_array_template, rest]) |
|
1089 | self.batch_template = u'\n'.join([firstline, self.job_array_template, rest]) | |
1092 |
|
1090 | |||
1093 | regex = re.compile(self.queue_regexp) |
|
1091 | # print self.queue_regexp.search(self.batch_template) | |
1094 |
|
|
1092 | if self.queue and not self.queue_regexp.search(self.batch_template): | |
1095 | if self.queue and not regex.search(self.batch_template): |
|
|||
1096 | self.log.debug("adding PBS queue settings to batch script") |
|
1093 | self.log.debug("adding PBS queue settings to batch script") | |
1097 | firstline, rest = self.batch_template.split('\n',1) |
|
1094 | firstline, rest = self.batch_template.split('\n',1) | |
1098 | self.batch_template = u'\n'.join([firstline, self.queue_template, rest]) |
|
1095 | self.batch_template = u'\n'.join([firstline, self.queue_template, rest]) | |
1099 |
|
1096 | |||
1100 | script_as_string = self.formatter.format(self.batch_template, **self.context) |
|
1097 | script_as_string = self.formatter.format(self.batch_template, **self.context) | |
1101 | self.log.debug('Writing batch script: %s', self.batch_file) |
|
1098 | self.log.debug('Writing batch script: %s', self.batch_file) | |
1102 |
|
1099 | |||
1103 | with open(self.batch_file, 'w') as f: |
|
1100 | with open(self.batch_file, 'w') as f: | |
1104 | f.write(script_as_string) |
|
1101 | f.write(script_as_string) | |
1105 | os.chmod(self.batch_file, stat.S_IRUSR | stat.S_IWUSR | stat.S_IXUSR) |
|
1102 | os.chmod(self.batch_file, stat.S_IRUSR | stat.S_IWUSR | stat.S_IXUSR) | |
1106 |
|
1103 | |||
1107 | def start(self, n): |
|
1104 | def start(self, n): | |
1108 | """Start n copies of the process using a batch system.""" |
|
1105 | """Start n copies of the process using a batch system.""" | |
1109 | self.log.debug("Starting %s: %r", self.__class__.__name__, self.args) |
|
1106 | self.log.debug("Starting %s: %r", self.__class__.__name__, self.args) | |
1110 | # Here we save profile_dir in the context so they |
|
1107 | # Here we save profile_dir in the context so they | |
1111 | # can be used in the batch script template as {profile_dir} |
|
1108 | # can be used in the batch script template as {profile_dir} | |
1112 | self.write_batch_script(n) |
|
1109 | self.write_batch_script(n) | |
1113 | output = check_output(self.args, env=os.environ) |
|
1110 | output = check_output(self.args, env=os.environ) | |
1114 |
|
1111 | |||
1115 | job_id = self.parse_job_id(output) |
|
1112 | job_id = self.parse_job_id(output) | |
1116 | self.notify_start(job_id) |
|
1113 | self.notify_start(job_id) | |
1117 | return job_id |
|
1114 | return job_id | |
1118 |
|
1115 | |||
1119 | def stop(self): |
|
1116 | def stop(self): | |
1120 | output = check_output(self.delete_command+[self.job_id], env=os.environ) |
|
1117 | output = check_output(self.delete_command+[self.job_id], env=os.environ) | |
1121 | self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd |
|
1118 | self.notify_stop(dict(job_id=self.job_id, output=output)) # Pass the output of the kill cmd | |
1122 | return output |
|
1119 | return output | |
1123 |
|
1120 | |||
1124 |
|
1121 | |||
1125 | class PBSLauncher(BatchSystemLauncher): |
|
1122 | class PBSLauncher(BatchSystemLauncher): | |
1126 | """A BatchSystemLauncher subclass for PBS.""" |
|
1123 | """A BatchSystemLauncher subclass for PBS.""" | |
1127 |
|
1124 | |||
1128 | submit_command = List(['qsub'], config=True, |
|
1125 | submit_command = List(['qsub'], config=True, | |
1129 | help="The PBS submit command ['qsub']") |
|
1126 | help="The PBS submit command ['qsub']") | |
1130 | delete_command = List(['qdel'], config=True, |
|
1127 | delete_command = List(['qdel'], config=True, | |
1131 | help="The PBS delete command ['qsub']") |
|
1128 | help="The PBS delete command ['qsub']") | |
1132 |
job_id_regexp = |
|
1129 | job_id_regexp = CRegExp(r'\d+', config=True, | |
1133 | help="Regular expresion for identifying the job ID [r'\d+']") |
|
1130 | help="Regular expresion for identifying the job ID [r'\d+']") | |
1134 |
|
1131 | |||
1135 | batch_file = Unicode(u'') |
|
1132 | batch_file = Unicode(u'') | |
1136 |
job_array_regexp = |
|
1133 | job_array_regexp = CRegExp('#PBS\W+-t\W+[\w\d\-\$]+') | |
1137 | job_array_template = Unicode('#PBS -t 1-{n}') |
|
1134 | job_array_template = Unicode('#PBS -t 1-{n}') | |
1138 |
queue_regexp = |
|
1135 | queue_regexp = CRegExp('#PBS\W+-q\W+\$?\w+') | |
1139 | queue_template = Unicode('#PBS -q {queue}') |
|
1136 | queue_template = Unicode('#PBS -q {queue}') | |
1140 |
|
1137 | |||
1141 |
|
1138 | |||
1142 | class PBSControllerLauncher(PBSLauncher, BatchClusterAppMixin): |
|
1139 | class PBSControllerLauncher(PBSLauncher, BatchClusterAppMixin): | |
1143 | """Launch a controller using PBS.""" |
|
1140 | """Launch a controller using PBS.""" | |
1144 |
|
1141 | |||
1145 | batch_file_name = Unicode(u'pbs_controller', config=True, |
|
1142 | batch_file_name = Unicode(u'pbs_controller', config=True, | |
1146 | help="batch file name for the controller job.") |
|
1143 | help="batch file name for the controller job.") | |
1147 | default_template= Unicode("""#!/bin/sh |
|
1144 | default_template= Unicode("""#!/bin/sh | |
1148 | #PBS -V |
|
1145 | #PBS -V | |
1149 | #PBS -N ipcontroller |
|
1146 | #PBS -N ipcontroller | |
1150 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1147 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" | |
1151 | """%(' '.join(ipcontroller_cmd_argv))) |
|
1148 | """%(' '.join(ipcontroller_cmd_argv))) | |
1152 |
|
1149 | |||
1153 |
|
1150 | |||
1154 | def start(self): |
|
1151 | def start(self): | |
1155 | """Start the controller by profile or profile_dir.""" |
|
1152 | """Start the controller by profile or profile_dir.""" | |
1156 | return super(PBSControllerLauncher, self).start(1) |
|
1153 | return super(PBSControllerLauncher, self).start(1) | |
1157 |
|
1154 | |||
1158 |
|
1155 | |||
1159 | class PBSEngineSetLauncher(PBSLauncher, BatchClusterAppMixin): |
|
1156 | class PBSEngineSetLauncher(PBSLauncher, BatchClusterAppMixin): | |
1160 | """Launch Engines using PBS""" |
|
1157 | """Launch Engines using PBS""" | |
1161 | batch_file_name = Unicode(u'pbs_engines', config=True, |
|
1158 | batch_file_name = Unicode(u'pbs_engines', config=True, | |
1162 | help="batch file name for the engine(s) job.") |
|
1159 | help="batch file name for the engine(s) job.") | |
1163 | default_template= Unicode(u"""#!/bin/sh |
|
1160 | default_template= Unicode(u"""#!/bin/sh | |
1164 | #PBS -V |
|
1161 | #PBS -V | |
1165 | #PBS -N ipengine |
|
1162 | #PBS -N ipengine | |
1166 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1163 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" | |
1167 | """%(' '.join(ipengine_cmd_argv))) |
|
1164 | """%(' '.join(ipengine_cmd_argv))) | |
1168 |
|
1165 | |||
1169 | def start(self, n): |
|
1166 | def start(self, n): | |
1170 | """Start n engines by profile or profile_dir.""" |
|
1167 | """Start n engines by profile or profile_dir.""" | |
1171 | return super(PBSEngineSetLauncher, self).start(n) |
|
1168 | return super(PBSEngineSetLauncher, self).start(n) | |
1172 |
|
1169 | |||
1173 | #SGE is very similar to PBS |
|
1170 | #SGE is very similar to PBS | |
1174 |
|
1171 | |||
1175 | class SGELauncher(PBSLauncher): |
|
1172 | class SGELauncher(PBSLauncher): | |
1176 | """Sun GridEngine is a PBS clone with slightly different syntax""" |
|
1173 | """Sun GridEngine is a PBS clone with slightly different syntax""" | |
1177 |
job_array_regexp = |
|
1174 | job_array_regexp = CRegExp('#\$\W+\-t') | |
1178 | job_array_template = Unicode('#$ -t 1-{n}') |
|
1175 | job_array_template = Unicode('#$ -t 1-{n}') | |
1179 |
queue_regexp = |
|
1176 | queue_regexp = CRegExp('#\$\W+-q\W+\$?\w+') | |
1180 | queue_template = Unicode('#$ -q {queue}') |
|
1177 | queue_template = Unicode('#$ -q {queue}') | |
1181 |
|
1178 | |||
1182 | class SGEControllerLauncher(SGELauncher, BatchClusterAppMixin): |
|
1179 | class SGEControllerLauncher(SGELauncher, BatchClusterAppMixin): | |
1183 | """Launch a controller using SGE.""" |
|
1180 | """Launch a controller using SGE.""" | |
1184 |
|
1181 | |||
1185 | batch_file_name = Unicode(u'sge_controller', config=True, |
|
1182 | batch_file_name = Unicode(u'sge_controller', config=True, | |
1186 | help="batch file name for the ipontroller job.") |
|
1183 | help="batch file name for the ipontroller job.") | |
1187 | default_template= Unicode(u"""#$ -V |
|
1184 | default_template= Unicode(u"""#$ -V | |
1188 | #$ -S /bin/sh |
|
1185 | #$ -S /bin/sh | |
1189 | #$ -N ipcontroller |
|
1186 | #$ -N ipcontroller | |
1190 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1187 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" | |
1191 | """%(' '.join(ipcontroller_cmd_argv))) |
|
1188 | """%(' '.join(ipcontroller_cmd_argv))) | |
1192 |
|
1189 | |||
1193 | def start(self): |
|
1190 | def start(self): | |
1194 | """Start the controller by profile or profile_dir.""" |
|
1191 | """Start the controller by profile or profile_dir.""" | |
1195 | return super(SGEControllerLauncher, self).start(1) |
|
1192 | return super(SGEControllerLauncher, self).start(1) | |
1196 |
|
1193 | |||
1197 | class SGEEngineSetLauncher(SGELauncher, BatchClusterAppMixin): |
|
1194 | class SGEEngineSetLauncher(SGELauncher, BatchClusterAppMixin): | |
1198 | """Launch Engines with SGE""" |
|
1195 | """Launch Engines with SGE""" | |
1199 | batch_file_name = Unicode(u'sge_engines', config=True, |
|
1196 | batch_file_name = Unicode(u'sge_engines', config=True, | |
1200 | help="batch file name for the engine(s) job.") |
|
1197 | help="batch file name for the engine(s) job.") | |
1201 | default_template = Unicode("""#$ -V |
|
1198 | default_template = Unicode("""#$ -V | |
1202 | #$ -S /bin/sh |
|
1199 | #$ -S /bin/sh | |
1203 | #$ -N ipengine |
|
1200 | #$ -N ipengine | |
1204 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1201 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" | |
1205 | """%(' '.join(ipengine_cmd_argv))) |
|
1202 | """%(' '.join(ipengine_cmd_argv))) | |
1206 |
|
1203 | |||
1207 | def start(self, n): |
|
1204 | def start(self, n): | |
1208 | """Start n engines by profile or profile_dir.""" |
|
1205 | """Start n engines by profile or profile_dir.""" | |
1209 | return super(SGEEngineSetLauncher, self).start(n) |
|
1206 | return super(SGEEngineSetLauncher, self).start(n) | |
1210 |
|
1207 | |||
1211 |
|
1208 | |||
1212 | # LSF launchers |
|
1209 | # LSF launchers | |
1213 |
|
1210 | |||
1214 | class LSFLauncher(BatchSystemLauncher): |
|
1211 | class LSFLauncher(BatchSystemLauncher): | |
1215 | """A BatchSystemLauncher subclass for LSF.""" |
|
1212 | """A BatchSystemLauncher subclass for LSF.""" | |
1216 |
|
1213 | |||
1217 | submit_command = List(['bsub'], config=True, |
|
1214 | submit_command = List(['bsub'], config=True, | |
1218 | help="The PBS submit command ['bsub']") |
|
1215 | help="The PBS submit command ['bsub']") | |
1219 | delete_command = List(['bkill'], config=True, |
|
1216 | delete_command = List(['bkill'], config=True, | |
1220 | help="The PBS delete command ['bkill']") |
|
1217 | help="The PBS delete command ['bkill']") | |
1221 |
job_id_regexp = |
|
1218 | job_id_regexp = CRegExp(r'\d+', config=True, | |
1222 | help="Regular expresion for identifying the job ID [r'\d+']") |
|
1219 | help="Regular expresion for identifying the job ID [r'\d+']") | |
1223 |
|
1220 | |||
1224 | batch_file = Unicode(u'') |
|
1221 | batch_file = Unicode(u'') | |
1225 |
job_array_regexp = |
|
1222 | job_array_regexp = CRegExp('#BSUB[ \t]-J+\w+\[\d+-\d+\]') | |
1226 | job_array_template = Unicode('#BSUB -J ipengine[1-{n}]') |
|
1223 | job_array_template = Unicode('#BSUB -J ipengine[1-{n}]') | |
1227 |
queue_regexp = |
|
1224 | queue_regexp = CRegExp('#BSUB[ \t]+-q[ \t]+\w+') | |
1228 | queue_template = Unicode('#BSUB -q {queue}') |
|
1225 | queue_template = Unicode('#BSUB -q {queue}') | |
1229 |
|
1226 | |||
1230 | def start(self, n): |
|
1227 | def start(self, n): | |
1231 | """Start n copies of the process using LSF batch system. |
|
1228 | """Start n copies of the process using LSF batch system. | |
1232 | This cant inherit from the base class because bsub expects |
|
1229 | This cant inherit from the base class because bsub expects | |
1233 | to be piped a shell script in order to honor the #BSUB directives : |
|
1230 | to be piped a shell script in order to honor the #BSUB directives : | |
1234 | bsub < script |
|
1231 | bsub < script | |
1235 | """ |
|
1232 | """ | |
1236 | # Here we save profile_dir in the context so they |
|
1233 | # Here we save profile_dir in the context so they | |
1237 | # can be used in the batch script template as {profile_dir} |
|
1234 | # can be used in the batch script template as {profile_dir} | |
1238 | self.write_batch_script(n) |
|
1235 | self.write_batch_script(n) | |
1239 | #output = check_output(self.args, env=os.environ) |
|
1236 | #output = check_output(self.args, env=os.environ) | |
1240 | piped_cmd = self.args[0]+'<\"'+self.args[1]+'\"' |
|
1237 | piped_cmd = self.args[0]+'<\"'+self.args[1]+'\"' | |
1241 | self.log.debug("Starting %s: %s", self.__class__.__name__, piped_cmd) |
|
1238 | self.log.debug("Starting %s: %s", self.__class__.__name__, piped_cmd) | |
1242 | p = Popen(piped_cmd, shell=True,env=os.environ,stdout=PIPE) |
|
1239 | p = Popen(piped_cmd, shell=True,env=os.environ,stdout=PIPE) | |
1243 | output,err = p.communicate() |
|
1240 | output,err = p.communicate() | |
1244 | job_id = self.parse_job_id(output) |
|
1241 | job_id = self.parse_job_id(output) | |
1245 | self.notify_start(job_id) |
|
1242 | self.notify_start(job_id) | |
1246 | return job_id |
|
1243 | return job_id | |
1247 |
|
1244 | |||
1248 |
|
1245 | |||
1249 | class LSFControllerLauncher(LSFLauncher, BatchClusterAppMixin): |
|
1246 | class LSFControllerLauncher(LSFLauncher, BatchClusterAppMixin): | |
1250 | """Launch a controller using LSF.""" |
|
1247 | """Launch a controller using LSF.""" | |
1251 |
|
1248 | |||
1252 | batch_file_name = Unicode(u'lsf_controller', config=True, |
|
1249 | batch_file_name = Unicode(u'lsf_controller', config=True, | |
1253 | help="batch file name for the controller job.") |
|
1250 | help="batch file name for the controller job.") | |
1254 | default_template= Unicode("""#!/bin/sh |
|
1251 | default_template= Unicode("""#!/bin/sh | |
1255 | #BSUB -J ipcontroller |
|
1252 | #BSUB -J ipcontroller | |
1256 | #BSUB -oo ipcontroller.o.%%J |
|
1253 | #BSUB -oo ipcontroller.o.%%J | |
1257 | #BSUB -eo ipcontroller.e.%%J |
|
1254 | #BSUB -eo ipcontroller.e.%%J | |
1258 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1255 | %s --log-to-file --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" | |
1259 | """%(' '.join(ipcontroller_cmd_argv))) |
|
1256 | """%(' '.join(ipcontroller_cmd_argv))) | |
1260 |
|
1257 | |||
1261 | def start(self): |
|
1258 | def start(self): | |
1262 | """Start the controller by profile or profile_dir.""" |
|
1259 | """Start the controller by profile or profile_dir.""" | |
1263 | return super(LSFControllerLauncher, self).start(1) |
|
1260 | return super(LSFControllerLauncher, self).start(1) | |
1264 |
|
1261 | |||
1265 |
|
1262 | |||
1266 | class LSFEngineSetLauncher(LSFLauncher, BatchClusterAppMixin): |
|
1263 | class LSFEngineSetLauncher(LSFLauncher, BatchClusterAppMixin): | |
1267 | """Launch Engines using LSF""" |
|
1264 | """Launch Engines using LSF""" | |
1268 | batch_file_name = Unicode(u'lsf_engines', config=True, |
|
1265 | batch_file_name = Unicode(u'lsf_engines', config=True, | |
1269 | help="batch file name for the engine(s) job.") |
|
1266 | help="batch file name for the engine(s) job.") | |
1270 | default_template= Unicode(u"""#!/bin/sh |
|
1267 | default_template= Unicode(u"""#!/bin/sh | |
1271 | #BSUB -oo ipengine.o.%%J |
|
1268 | #BSUB -oo ipengine.o.%%J | |
1272 | #BSUB -eo ipengine.e.%%J |
|
1269 | #BSUB -eo ipengine.e.%%J | |
1273 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" |
|
1270 | %s --profile-dir="{profile_dir}" --cluster-id="{cluster_id}" | |
1274 | """%(' '.join(ipengine_cmd_argv))) |
|
1271 | """%(' '.join(ipengine_cmd_argv))) | |
1275 |
|
1272 | |||
1276 | def start(self, n): |
|
1273 | def start(self, n): | |
1277 | """Start n engines by profile or profile_dir.""" |
|
1274 | """Start n engines by profile or profile_dir.""" | |
1278 | return super(LSFEngineSetLauncher, self).start(n) |
|
1275 | return super(LSFEngineSetLauncher, self).start(n) | |
1279 |
|
1276 | |||
1280 |
|
1277 | |||
1281 | #----------------------------------------------------------------------------- |
|
1278 | #----------------------------------------------------------------------------- | |
1282 | # A launcher for ipcluster itself! |
|
1279 | # A launcher for ipcluster itself! | |
1283 | #----------------------------------------------------------------------------- |
|
1280 | #----------------------------------------------------------------------------- | |
1284 |
|
1281 | |||
1285 |
|
1282 | |||
1286 | class IPClusterLauncher(LocalProcessLauncher): |
|
1283 | class IPClusterLauncher(LocalProcessLauncher): | |
1287 | """Launch the ipcluster program in an external process.""" |
|
1284 | """Launch the ipcluster program in an external process.""" | |
1288 |
|
1285 | |||
1289 | ipcluster_cmd = List(ipcluster_cmd_argv, config=True, |
|
1286 | ipcluster_cmd = List(ipcluster_cmd_argv, config=True, | |
1290 | help="Popen command for ipcluster") |
|
1287 | help="Popen command for ipcluster") | |
1291 | ipcluster_args = List( |
|
1288 | ipcluster_args = List( | |
1292 | ['--clean-logs=True', '--log-to-file', '--log-level=%i'%logging.INFO], config=True, |
|
1289 | ['--clean-logs=True', '--log-to-file', '--log-level=%i'%logging.INFO], config=True, | |
1293 | help="Command line arguments to pass to ipcluster.") |
|
1290 | help="Command line arguments to pass to ipcluster.") | |
1294 | ipcluster_subcommand = Unicode('start') |
|
1291 | ipcluster_subcommand = Unicode('start') | |
1295 | profile = Unicode('default') |
|
1292 | profile = Unicode('default') | |
1296 | n = Integer(2) |
|
1293 | n = Integer(2) | |
1297 |
|
1294 | |||
1298 | def find_args(self): |
|
1295 | def find_args(self): | |
1299 | return self.ipcluster_cmd + [self.ipcluster_subcommand] + \ |
|
1296 | return self.ipcluster_cmd + [self.ipcluster_subcommand] + \ | |
1300 | ['--n=%i'%self.n, '--profile=%s'%self.profile] + \ |
|
1297 | ['--n=%i'%self.n, '--profile=%s'%self.profile] + \ | |
1301 | self.ipcluster_args |
|
1298 | self.ipcluster_args | |
1302 |
|
1299 | |||
1303 | def start(self): |
|
1300 | def start(self): | |
1304 | return super(IPClusterLauncher, self).start() |
|
1301 | return super(IPClusterLauncher, self).start() | |
1305 |
|
1302 | |||
1306 | #----------------------------------------------------------------------------- |
|
1303 | #----------------------------------------------------------------------------- | |
1307 | # Collections of launchers |
|
1304 | # Collections of launchers | |
1308 | #----------------------------------------------------------------------------- |
|
1305 | #----------------------------------------------------------------------------- | |
1309 |
|
1306 | |||
1310 | local_launchers = [ |
|
1307 | local_launchers = [ | |
1311 | LocalControllerLauncher, |
|
1308 | LocalControllerLauncher, | |
1312 | LocalEngineLauncher, |
|
1309 | LocalEngineLauncher, | |
1313 | LocalEngineSetLauncher, |
|
1310 | LocalEngineSetLauncher, | |
1314 | ] |
|
1311 | ] | |
1315 | mpi_launchers = [ |
|
1312 | mpi_launchers = [ | |
1316 | MPILauncher, |
|
1313 | MPILauncher, | |
1317 | MPIControllerLauncher, |
|
1314 | MPIControllerLauncher, | |
1318 | MPIEngineSetLauncher, |
|
1315 | MPIEngineSetLauncher, | |
1319 | ] |
|
1316 | ] | |
1320 | ssh_launchers = [ |
|
1317 | ssh_launchers = [ | |
1321 | SSHLauncher, |
|
1318 | SSHLauncher, | |
1322 | SSHControllerLauncher, |
|
1319 | SSHControllerLauncher, | |
1323 | SSHEngineLauncher, |
|
1320 | SSHEngineLauncher, | |
1324 | SSHEngineSetLauncher, |
|
1321 | SSHEngineSetLauncher, | |
1325 | ] |
|
1322 | ] | |
1326 | winhpc_launchers = [ |
|
1323 | winhpc_launchers = [ | |
1327 | WindowsHPCLauncher, |
|
1324 | WindowsHPCLauncher, | |
1328 | WindowsHPCControllerLauncher, |
|
1325 | WindowsHPCControllerLauncher, | |
1329 | WindowsHPCEngineSetLauncher, |
|
1326 | WindowsHPCEngineSetLauncher, | |
1330 | ] |
|
1327 | ] | |
1331 | pbs_launchers = [ |
|
1328 | pbs_launchers = [ | |
1332 | PBSLauncher, |
|
1329 | PBSLauncher, | |
1333 | PBSControllerLauncher, |
|
1330 | PBSControllerLauncher, | |
1334 | PBSEngineSetLauncher, |
|
1331 | PBSEngineSetLauncher, | |
1335 | ] |
|
1332 | ] | |
1336 | sge_launchers = [ |
|
1333 | sge_launchers = [ | |
1337 | SGELauncher, |
|
1334 | SGELauncher, | |
1338 | SGEControllerLauncher, |
|
1335 | SGEControllerLauncher, | |
1339 | SGEEngineSetLauncher, |
|
1336 | SGEEngineSetLauncher, | |
1340 | ] |
|
1337 | ] | |
1341 | lsf_launchers = [ |
|
1338 | lsf_launchers = [ | |
1342 | LSFLauncher, |
|
1339 | LSFLauncher, | |
1343 | LSFControllerLauncher, |
|
1340 | LSFControllerLauncher, | |
1344 | LSFEngineSetLauncher, |
|
1341 | LSFEngineSetLauncher, | |
1345 | ] |
|
1342 | ] | |
1346 | all_launchers = local_launchers + mpi_launchers + ssh_launchers + winhpc_launchers\ |
|
1343 | all_launchers = local_launchers + mpi_launchers + ssh_launchers + winhpc_launchers\ | |
1347 | + pbs_launchers + sge_launchers + lsf_launchers |
|
1344 | + pbs_launchers + sge_launchers + lsf_launchers | |
1348 |
|
1345 |
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