Removed ability to clear stdout and stderr individually.

IPython/core/display.py

@@ -1,691 +1,671 b''
 # -*- coding: utf-8 -*-
 """Top-level display functions for displaying object in different formats.
 
 Authors:
 
 * Brian Granger
 """
 
 #-----------------------------------------------------------------------------
 #       Copyright (C) 2013 The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import print_function
 
 import os
 import struct
 
 from IPython.utils.py3compat import string_types, cast_bytes_py2, cast_unicode
 
 from .displaypub import publish_display_data
 
 #-----------------------------------------------------------------------------
 # utility functions
 #-----------------------------------------------------------------------------
 
 def _safe_exists(path):
     """Check path, but don't let exceptions raise"""
     try:
         return os.path.exists(path)
     except Exception:
         return False
 
 def _merge(d1, d2):
     """Like update, but merges sub-dicts instead of clobbering at the top level.
 
     Updates d1 in-place
     """
 
     if not isinstance(d2, dict) or not isinstance(d1, dict):
         return d2
     for key, value in d2.items():
         d1[key] = _merge(d1.get(key), value)
     return d1
 
 def _display_mimetype(mimetype, objs, raw=False, metadata=None):
     """internal implementation of all display_foo methods
 
     Parameters
     ----------
     mimetype : str
         The mimetype to be published (e.g. 'image/png')
     objs : tuple of objects
         The Python objects to display, or if raw=True raw text data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     if metadata:
         metadata = {mimetype: metadata}
     if raw:
         # turn list of pngdata into list of { 'image/png': pngdata }
         objs = [ {mimetype: obj} for obj in objs ]
     display(*objs, raw=raw, metadata=metadata, include=[mimetype])
 
 #-----------------------------------------------------------------------------
 # Main functions
 #-----------------------------------------------------------------------------
 
 def display(*objs, **kwargs):
     """Display a Python object in all frontends.
 
     By default all representations will be computed and sent to the frontends.
     Frontends can decide which representation is used and how.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display.
     raw : bool, optional
         Are the objects to be displayed already mimetype-keyed dicts of raw display data,
         or Python objects that need to be formatted before display? [default: False]
     include : list or tuple, optional
         A list of format type strings (MIME types) to include in the
         format data dict. If this is set *only* the format types included
         in this list will be computed.
     exclude : list or tuple, optional
         A list of format type strings (MIME types) to exclude in the format
         data dict. If this is set all format types will be computed,
         except for those included in this argument.
     metadata : dict, optional
         A dictionary of metadata to associate with the output.
         mime-type keys in this dictionary will be associated with the individual
         representation formats, if they exist.
     """
     raw = kwargs.get('raw', False)
     include = kwargs.get('include')
     exclude = kwargs.get('exclude')
     metadata = kwargs.get('metadata')
 
     from IPython.core.interactiveshell import InteractiveShell
 
     if raw:
         for obj in objs:
             publish_display_data('display', obj, metadata)
     else:
         format = InteractiveShell.instance().display_formatter.format
         for obj in objs:
             format_dict, md_dict = format(obj, include=include, exclude=exclude)
             if metadata:
                 # kwarg-specified metadata gets precedence
                 _merge(md_dict, metadata)
             publish_display_data('display', format_dict, md_dict)
 
 
 def display_pretty(*objs, **kwargs):
     """Display the pretty (default) representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw text data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('text/plain', objs, **kwargs)
 
 
 def display_html(*objs, **kwargs):
     """Display the HTML representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw HTML data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('text/html', objs, **kwargs)
 
 
 def display_svg(*objs, **kwargs):
     """Display the SVG representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw svg data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('image/svg+xml', objs, **kwargs)
 
 
 def display_png(*objs, **kwargs):
     """Display the PNG representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw png data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('image/png', objs, **kwargs)
 
 
 def display_jpeg(*objs, **kwargs):
     """Display the JPEG representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw JPEG data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('image/jpeg', objs, **kwargs)
 
 
 def display_latex(*objs, **kwargs):
     """Display the LaTeX representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw latex data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('text/latex', objs, **kwargs)
 
 
 def display_json(*objs, **kwargs):
     """Display the JSON representation of an object.
 
     Note that not many frontends support displaying JSON.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw json data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('application/json', objs, **kwargs)
 
 
 def display_javascript(*objs, **kwargs):
     """Display the Javascript representation of an object.
 
     Parameters
     ----------
     objs : tuple of objects
         The Python objects to display, or if raw=True raw javascript data to
         display.
     raw : bool
         Are the data objects raw data or Python objects that need to be
         formatted before display? [default: False]
     metadata : dict (optional)
         Metadata to be associated with the specific mimetype output.
     """
     _display_mimetype('application/javascript', objs, **kwargs)
 
 #-----------------------------------------------------------------------------
 # Smart classes
 #-----------------------------------------------------------------------------
 
 
 class DisplayObject(object):
     """An object that wraps data to be displayed."""
 
     _read_flags = 'r'
 
     def __init__(self, data=None, url=None, filename=None):
         """Create a display object given raw data.
 
         When this object is returned by an expression or passed to the
         display function, it will result in the data being displayed
         in the frontend. The MIME type of the data should match the
         subclasses used, so the Png subclass should be used for 'image/png'
         data. If the data is a URL, the data will first be downloaded
         and then displayed. If
 
         Parameters
         ----------
         data : unicode, str or bytes
             The raw data or a URL or file to load the data from
         url : unicode
             A URL to download the data from.
         filename : unicode
             Path to a local file to load the data from.
         """
         if data is not None and isinstance(data, string_types):
             if data.startswith('http') and url is None:
                 url = data
                 filename = None
                 data = None
             elif _safe_exists(data) and filename is None:
                 url = None
                 filename = data
                 data = None
 
         self.data = data
         self.url = url
         self.filename = None if filename is None else unicode(filename)
 
         self.reload()
 
     def reload(self):
         """Reload the raw data from file or URL."""
         if self.filename is not None:
             with open(self.filename, self._read_flags) as f:
                 self.data = f.read()
         elif self.url is not None:
             try:
                 import urllib2
                 response = urllib2.urlopen(self.url)
                 self.data = response.read()
                 # extract encoding from header, if there is one:
                 encoding = None
                 for sub in response.headers['content-type'].split(';'):
                     sub = sub.strip()
                     if sub.startswith('charset'):
                         encoding = sub.split('=')[-1].strip()
                         break
                 # decode data, if an encoding was specified
                 if encoding:
                     self.data = self.data.decode(encoding, 'replace')
             except:
                 self.data = None
 
 class Pretty(DisplayObject):
 
     def _repr_pretty_(self):
         return self.data
 
 
 class HTML(DisplayObject):
 
     def _repr_html_(self):
         return self.data
 
     def __html__(self):
         """
         This method exists to inform other HTML-using modules (e.g. Markupsafe,
         htmltag, etc) that this object is HTML and does not need things like
         special characters (<>&) escaped.
         """
         return self._repr_html_()
 
 
 class Math(DisplayObject):
 
     def _repr_latex_(self):
         s = self.data.strip('$')
         return "$$%s$$" % s
 
 
 class Latex(DisplayObject):
 
     def _repr_latex_(self):
         return self.data
 
 
 class SVG(DisplayObject):
 
     # wrap data in a property, which extracts the <svg> tag, discarding
     # document headers
     _data = None
 
     @property
     def data(self):
         return self._data
 
     @data.setter
     def data(self, svg):
         if svg is None:
             self._data = None
             return
         # parse into dom object
         from xml.dom import minidom
         svg = cast_bytes_py2(svg)
         x = minidom.parseString(svg)
         # get svg tag (should be 1)
         found_svg = x.getElementsByTagName('svg')
         if found_svg:
             svg = found_svg[0].toxml()
         else:
             # fallback on the input, trust the user
             # but this is probably an error.
             pass
         svg = cast_unicode(svg)
         self._data = svg
 
     def _repr_svg_(self):
         return self.data
 
 
 class JSON(DisplayObject):
 
     def _repr_json_(self):
         return self.data
 
 css_t = """$("head").append($("<link/>").attr({
   rel:  "stylesheet",
   type: "text/css",
   href: "%s"
 }));
 """
 
 lib_t1 = """$.getScript("%s", function () {
 """
 lib_t2 = """});
 """
 
 class Javascript(DisplayObject):
 
     def __init__(self, data=None, url=None, filename=None, lib=None, css=None):
         """Create a Javascript display object given raw data.
 
         When this object is returned by an expression or passed to the
         display function, it will result in the data being displayed
         in the frontend. If the data is a URL, the data will first be
         downloaded and then displayed.
 
         In the Notebook, the containing element will be available as `element`,
         and jQuery will be available.  The output area starts hidden, so if
         the js appends content to `element` that should be visible, then
         it must call `container.show()` to unhide the area.
 
         Parameters
         ----------
         data : unicode, str or bytes
             The Javascript source code or a URL to download it from.
         url : unicode
             A URL to download the data from.
         filename : unicode
             Path to a local file to load the data from.
         lib : list or str
             A sequence of Javascript library URLs to load asynchronously before
             running the source code. The full URLs of the libraries should
             be given. A single Javascript library URL can also be given as a
             string.
         css: : list or str
             A sequence of css files to load before running the source code.
             The full URLs of the css files should be given. A single css URL
             can also be given as a string.
         """
         if isinstance(lib, basestring):
             lib = [lib]
         elif lib is None:
             lib = []
         if isinstance(css, basestring):
             css = [css]
         elif css is None:
             css = []
         if not isinstance(lib, (list,tuple)):
             raise TypeError('expected sequence, got: %r' % lib)
         if not isinstance(css, (list,tuple)):
             raise TypeError('expected sequence, got: %r' % css)
         self.lib = lib
         self.css = css
         super(Javascript, self).__init__(data=data, url=url, filename=filename)
 
     def _repr_javascript_(self):
         r = ''
         for c in self.css:
             r += css_t % c
         for l in self.lib:
             r += lib_t1 % l
         r += self.data
         r += lib_t2*len(self.lib)
         return r
 
 # constants for identifying png/jpeg data
 _PNG = b'\x89PNG\r\n\x1a\n'
 _JPEG = b'\xff\xd8'
 
 def _pngxy(data):
     """read the (width, height) from a PNG header"""
     ihdr = data.index(b'IHDR')
     # next 8 bytes are width/height
     w4h4 = data[ihdr+4:ihdr+12]
     return struct.unpack('>ii', w4h4)
 
 def _jpegxy(data):
     """read the (width, height) from a JPEG header"""
     # adapted from http://www.64lines.com/jpeg-width-height
     
     idx = 4
     while True:
         block_size = struct.unpack('>H', data[idx:idx+2])[0]
         idx = idx + block_size
         if data[idx:idx+2] == b'\xFF\xC0':
             # found Start of Frame
             iSOF = idx
             break
         else:
             # read another block
             idx += 2
 
     h, w = struct.unpack('>HH', data[iSOF+5:iSOF+9])
     return w, h
 
 class Image(DisplayObject):
 
     _read_flags = 'rb'
     _FMT_JPEG = u'jpeg'
     _FMT_PNG = u'png'
     _ACCEPTABLE_EMBEDDINGS = [_FMT_JPEG, _FMT_PNG]
 
     def __init__(self, data=None, url=None, filename=None, format=u'png', embed=None, width=None, height=None, retina=False):
         """Create a PNG/JPEG image object given raw data.
 
         When this object is returned by an input cell or passed to the
         display function, it will result in the image being displayed
         in the frontend.
 
         Parameters
         ----------
         data : unicode, str or bytes
             The raw image data or a URL or filename to load the data from.
             This always results in embedded image data.
         url : unicode
             A URL to download the data from. If you specify `url=`,
             the image data will not be embedded unless you also specify `embed=True`.
         filename : unicode
             Path to a local file to load the data from.
             Images from a file are always embedded.
         format : unicode
             The format of the image data (png/jpeg/jpg). If a filename or URL is given
             for format will be inferred from the filename extension.
         embed : bool
             Should the image data be embedded using a data URI (True) or be
             loaded using an <img> tag. Set this to True if you want the image
             to be viewable later with no internet connection in the notebook.
 
             Default is `True`, unless the keyword argument `url` is set, then
             default value is `False`.
 
             Note that QtConsole is not able to display images if `embed` is set to `False`
         width : int
             Width to which to constrain the image in html
         height : int
             Height to which to constrain the image in html
         retina : bool
             Automatically set the width and height to half of the measured
             width and height.
             This only works for embedded images because it reads the width/height
             from image data.
             For non-embedded images, you can just set the desired display width
             and height directly.
 
         Examples
         --------
         # embedded image data, works in qtconsole and notebook
         # when passed positionally, the first arg can be any of raw image data,
         # a URL, or a filename from which to load image data.
         # The result is always embedding image data for inline images.
         Image('http://www.google.fr/images/srpr/logo3w.png')
         Image('/path/to/image.jpg')
         Image(b'RAW_PNG_DATA...')
 
         # Specifying Image(url=...) does not embed the image data,
         # it only generates `<img>` tag with a link to the source.
         # This will not work in the qtconsole or offline.
         Image(url='http://www.google.fr/images/srpr/logo3w.png')
 
         """
         if filename is not None:
             ext = self._find_ext(filename)
         elif url is not None:
             ext = self._find_ext(url)
         elif data is None:
             raise ValueError("No image data found. Expecting filename, url, or data.")
         elif isinstance(data, string_types) and (
             data.startswith('http') or _safe_exists(data)
         ):
             ext = self._find_ext(data)
         else:
             ext = None
 
         if ext is not None:
             format = ext.lower()
             if ext == u'jpg' or ext == u'jpeg':
                 format = self._FMT_JPEG
             if ext == u'png':
                 format = self._FMT_PNG
         elif isinstance(data, bytes) and format == 'png':
             # infer image type from image data header,
             # only if format might not have been specified.
             if data[:2] == _JPEG:
                 format = 'jpeg'
 
         self.format = unicode(format).lower()
         self.embed = embed if embed is not None else (url is None)
 
         if self.embed and self.format not in self._ACCEPTABLE_EMBEDDINGS:
             raise ValueError("Cannot embed the '%s' image format" % (self.format))
         self.width = width
         self.height = height
         self.retina = retina
         super(Image, self).__init__(data=data, url=url, filename=filename)
         
         if retina:
             self._retina_shape()
     
     def _retina_shape(self):
         """load pixel-doubled width and height from image data"""
         if not self.embed:
             return
         if self.format == 'png':
             w, h = _pngxy(self.data)
         elif self.format == 'jpeg':
             w, h = _jpegxy(self.data)
         else:
             # retina only supports png
             return
         self.width = w // 2
         self.height = h // 2
 
     def reload(self):
         """Reload the raw data from file or URL."""
         if self.embed:
             super(Image,self).reload()
             if self.retina:
                 self._retina_shape()
 
     def _repr_html_(self):
         if not self.embed:
             width = height = ''
             if self.width:
                 width = ' width="%d"' % self.width
             if self.height:
                 height = ' height="%d"' % self.height
             return u'<img src="%s"%s%s/>' % (self.url, width, height)
 
     def _data_and_metadata(self):
         """shortcut for returning metadata with shape information, if defined"""
         md = {}
         if self.width:
             md['width'] = self.width
         if self.height:
             md['height'] = self.height
         if md:
             return self.data, md
         else:
             return self.data
 
     def _repr_png_(self):
         if self.embed and self.format == u'png':
             return self._data_and_metadata()
 
     def _repr_jpeg_(self):
         if self.embed and (self.format == u'jpeg' or self.format == u'jpg'):
             return self._data_and_metadata()
 
     def _find_ext(self, s):
         return unicode(s.split('.')[-1].lower())
 
 
-def clear_output(stdout=True, stderr=True, other=True):
-    """Clear the output of the current cell receiving output.
-
-    Optionally, each of stdout/stderr or other non-stream data (e.g. anything
-    produced by display()) can be excluded from the clear event.
-
-    By default, everything is cleared.
-
-    Parameters
-    ----------
-    stdout : bool [default: True]
-        Whether to clear stdout.
-    stderr : bool [default: True]
-        Whether to clear stderr.
-    other : bool [default: True]
-        Whether to clear everything else that is not stdout/stderr
-        (e.g. figures,images,HTML, any result of display()).
-    """
+def clear_output():
+    """Clear the output of the current cell receiving output."""
     from IPython.core.interactiveshell import InteractiveShell
     if InteractiveShell.initialized():
-        InteractiveShell.instance().display_pub.clear_output(
-            stdout=stdout, stderr=stderr, other=other,
-        )
+        InteractiveShell.instance().display_pub.clear_output()
     else:
         from IPython.utils import io
-        if stdout:
-            print('\033[2K\r', file=io.stdout, end='')
-            io.stdout.flush()
-        if stderr:
-            print('\033[2K\r', file=io.stderr, end='')
-            io.stderr.flush()
+        print('\033[2K\r', file=io.stdout, end='')
+        io.stdout.flush()
+        print('\033[2K\r', file=io.stderr, end='')
+        io.stderr.flush()
 

IPython/core/displaypub.py

@@ -1,178 +1,176 b''
 """An interface for publishing rich data to frontends.
 
 There are two components of the display system:
 
 * Display formatters, which take a Python object and compute the
   representation of the object in various formats (text, HTML, SVG, etc.).
 * The display publisher that is used to send the representation data to the
   various frontends.
 
 This module defines the logic display publishing. The display publisher uses
 the ``display_data`` message type that is defined in the IPython messaging
 spec.
 
 Authors:
 
 * Brian Granger
 """
 
 #-----------------------------------------------------------------------------
 #       Copyright (C) 2008-2011 The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 
 from __future__ import print_function
 
 from IPython.config.configurable import Configurable
 from IPython.utils import io
 from IPython.utils.traitlets import List
 
 #-----------------------------------------------------------------------------
 # Main payload class
 #-----------------------------------------------------------------------------
 
 class DisplayPublisher(Configurable):
     """A traited class that publishes display data to frontends.
 
     Instances of this class are created by the main IPython object and should
     be accessed there.
     """
 
     def _validate_data(self, source, data, metadata=None):
         """Validate the display data.
 
         Parameters
         ----------
         source : str
             The fully dotted name of the callable that created the data, like
             :func:`foo.bar.my_formatter`.
         data : dict
             The formata data dictionary.
         metadata : dict
             Any metadata for the data.
         """
 
         if not isinstance(source, basestring):
             raise TypeError('source must be a str, got: %r' % source)
         if not isinstance(data, dict):
             raise TypeError('data must be a dict, got: %r' % data)
         if metadata is not None:
             if not isinstance(metadata, dict):
                 raise TypeError('metadata must be a dict, got: %r' % data)
 
     def publish(self, source, data, metadata=None):
         """Publish data and metadata to all frontends.
 
         See the ``display_data`` message in the messaging documentation for
         more details about this message type.
 
         The following MIME types are currently implemented:
 
         * text/plain
         * text/html
         * text/latex
         * application/json
         * application/javascript
         * image/png
         * image/jpeg
         * image/svg+xml
 
         Parameters
         ----------
         source : str
             A string that give the function or method that created the data,
             such as 'IPython.core.page'.
         data : dict
             A dictionary having keys that are valid MIME types (like
             'text/plain' or 'image/svg+xml') and values that are the data for
             that MIME type. The data itself must be a JSON'able data
             structure. Minimally all data should have the 'text/plain' data,
             which can be displayed by all frontends. If more than the plain
             text is given, it is up to the frontend to decide which
             representation to use.
         metadata : dict
             A dictionary for metadata related to the data. This can contain
             arbitrary key, value pairs that frontends can use to interpret
             the data.  Metadata specific to each mime-type can be specified
             in the metadata dict with the same mime-type keys as
             the data itself.
         """
 
         # The default is to simply write the plain text data using io.stdout.
         if 'text/plain' in data:
             print(data['text/plain'], file=io.stdout)
 
-    def clear_output(self, stdout=True, stderr=True, other=True):
+    def clear_output(self):
         """Clear the output of the cell receiving output."""
-        if stdout:
-            print('\033[2K\r', file=io.stdout, end='')
-            io.stdout.flush()
-        if stderr:
-            print('\033[2K\r', file=io.stderr, end='')
-            io.stderr.flush()
+        print('\033[2K\r', file=io.stdout, end='')
+        io.stdout.flush()
+        print('\033[2K\r', file=io.stderr, end='')
+        io.stderr.flush()
 
 
 class CapturingDisplayPublisher(DisplayPublisher):
     """A DisplayPublisher that stores"""
     outputs = List()
 
     def publish(self, source, data, metadata=None):
         self.outputs.append((source, data, metadata))
     
-    def clear_output(self, stdout=True, stderr=True, other=True):
-        super(CapturingDisplayPublisher, self).clear_output(stdout, stderr, other)
+    def clear_output(self):
+        super(CapturingDisplayPublisher, self).clear_output()
         if other:
             # empty the list, *do not* reassign a new list
             del self.outputs[:]
 
 
 def publish_display_data(source, data, metadata=None):
     """Publish data and metadata to all frontends.
 
     See the ``display_data`` message in the messaging documentation for
     more details about this message type.
 
     The following MIME types are currently implemented:
 
     * text/plain
     * text/html
     * text/latex
     * application/json
     * application/javascript
     * image/png
     * image/jpeg
     * image/svg+xml
 
     Parameters
     ----------
     source : str
         A string that give the function or method that created the data,
         such as 'IPython.core.page'.
     data : dict
         A dictionary having keys that are valid MIME types (like
         'text/plain' or 'image/svg+xml') and values that are the data for
         that MIME type. The data itself must be a JSON'able data
         structure. Minimally all data should have the 'text/plain' data,
         which can be displayed by all frontends. If more than the plain
         text is given, it is up to the frontend to decide which
         representation to use.
     metadata : dict
         A dictionary for metadata related to the data. This can contain
         arbitrary key, value pairs that frontends can use to interpret
         the data. mime-type keys matching those in data can be used
         to specify metadata about particular representations.
         """
     from IPython.core.interactiveshell import InteractiveShell
     InteractiveShell.instance().display_pub.publish(
         source,
         data,
         metadata
     )
 
 

IPython/html/static/notebook/js/codecell.js

@@ -1,441 +1,441 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008-2011  The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // CodeCell
 //============================================================================
 /**
  * An extendable module that provide base functionnality to create cell for notebook.
  * @module IPython
  * @namespace IPython
  * @submodule CodeCell
  */
 
 
 /* local util for codemirror */
 var posEq = function(a, b) {return a.line == b.line && a.ch == b.ch;}
 
 /**
  *
  * function to delete until previous non blanking space character
  * or first multiple of 4 tabstop.
  * @private
  */
 CodeMirror.commands.delSpaceToPrevTabStop = function(cm){
     var from = cm.getCursor(true), to = cm.getCursor(false), sel = !posEq(from, to);
     if (!posEq(from, to)) {cm.replaceRange("", from, to); return}
     var cur = cm.getCursor(), line = cm.getLine(cur.line);
     var tabsize = cm.getOption('tabSize');
     var chToPrevTabStop = cur.ch-(Math.ceil(cur.ch/tabsize)-1)*tabsize;
     var from = {ch:cur.ch-chToPrevTabStop,line:cur.line}
     var select = cm.getRange(from,cur)
     if( select.match(/^\ +$/) != null){
         cm.replaceRange("",from,cur)
     } else {
         cm.deleteH(-1,"char")
     }
 };
 
 
 var IPython = (function (IPython) {
     "use strict";
 
     var utils = IPython.utils;
     var key   = IPython.utils.keycodes;
 
     /**
      * A Cell conceived to write code.
      *
      * The kernel doesn't have to be set at creation time, in that case
      * it will be null and set_kernel has to be called later.
      * @class CodeCell
      * @extends IPython.Cell
      *
      * @constructor
      * @param {Object|null} kernel
      * @param {object|undefined} [options]
      *      @param [options.cm_config] {object} config to pass to CodeMirror
      */
     var CodeCell = function (kernel, options) {
         this.kernel = kernel || null;
         this.code_mirror = null;
         this.input_prompt_number = null;
         this.collapsed = false;
         this.cell_type = "code";
 
 
         var cm_overwrite_options  = {
             onKeyEvent: $.proxy(this.handle_codemirror_keyevent,this)
         };
 
         options = this.mergeopt(CodeCell, options, {cm_config:cm_overwrite_options});
 
         IPython.Cell.apply(this,[options]);
 
         var that = this;
         this.element.focusout(
             function() { that.auto_highlight(); }
         );
     };
 
     CodeCell.options_default = {
         cm_config : {
             extraKeys: {
                 "Tab" :  "indentMore",
                 "Shift-Tab" : "indentLess",
                 "Backspace" : "delSpaceToPrevTabStop",
                 "Cmd-/" : "toggleComment",
                 "Ctrl-/" : "toggleComment"
             },
             mode: 'ipython',
             theme: 'ipython',
             matchBrackets: true
         }
     };
 
 
     CodeCell.prototype = new IPython.Cell();
 
     /**
      * @method auto_highlight
      */
     CodeCell.prototype.auto_highlight = function () {
         this._auto_highlight(IPython.config.cell_magic_highlight)
     };
 
     /** @method create_element */
     CodeCell.prototype.create_element = function () {
         IPython.Cell.prototype.create_element.apply(this, arguments);
 
         var cell =  $('<div></div>').addClass('cell border-box-sizing code_cell');
         cell.attr('tabindex','2');
 
         this.celltoolbar = new IPython.CellToolbar(this);
 
         var input = $('<div></div>').addClass('input');
         var vbox = $('<div/>').addClass('vbox box-flex1')
         input.append($('<div/>').addClass('prompt input_prompt'));
         vbox.append(this.celltoolbar.element);
         var input_area = $('<div/>').addClass('input_area');
         this.code_mirror = CodeMirror(input_area.get(0), this.cm_config);
         $(this.code_mirror.getInputField()).attr("spellcheck", "false");
         vbox.append(input_area);
         input.append(vbox);
         var output = $('<div></div>');
         cell.append(input).append(output);
         this.element = cell;
         this.output_area = new IPython.OutputArea(output, true);
 
         // construct a completer only if class exist
         // otherwise no print view
         if (IPython.Completer !== undefined)
         {
             this.completer = new IPython.Completer(this);
         }
     };
 
     /**
      *  This method gets called in CodeMirror's onKeyDown/onKeyPress
      *  handlers and is used to provide custom key handling. Its return
      *  value is used to determine if CodeMirror should ignore the event:
      *  true = ignore, false = don't ignore.
      *  @method handle_codemirror_keyevent
      */
     CodeCell.prototype.handle_codemirror_keyevent = function (editor, event) {
 
         var that = this;
         // whatever key is pressed, first, cancel the tooltip request before
         // they are sent, and remove tooltip if any, except for tab again
         if (event.type === 'keydown' && event.which != key.TAB ) {
             IPython.tooltip.remove_and_cancel_tooltip();
         };
 
         var cur = editor.getCursor();
         if (event.keyCode === key.ENTER){
             this.auto_highlight();
         }
 
         if (event.keyCode === key.ENTER && (event.shiftKey || event.ctrlKey)) {
             // Always ignore shift-enter in CodeMirror as we handle it.
             return true;
         } else if (event.which === 40 && event.type === 'keypress' && IPython.tooltip.time_before_tooltip >= 0) {
             // triger on keypress (!) otherwise inconsistent event.which depending on plateform
             // browser and keyboard layout !
             // Pressing '(' , request tooltip, don't forget to reappend it
             // The second argument says to hide the tooltip if the docstring
             // is actually empty
             IPython.tooltip.pending(that, true);
         } else if (event.which === key.UPARROW && event.type === 'keydown') {
             // If we are not at the top, let CM handle the up arrow and
             // prevent the global keydown handler from handling it.
             if (!that.at_top()) {
                 event.stop();
                 return false;
             } else {
                 return true;
             };
         } else if (event.which === key.ESC) {
             return IPython.tooltip.remove_and_cancel_tooltip(true);
         } else if (event.which === key.DOWNARROW && event.type === 'keydown') {
             // If we are not at the bottom, let CM handle the down arrow and
             // prevent the global keydown handler from handling it.
             if (!that.at_bottom()) {
                 event.stop();
                 return false;
             } else {
                 return true;
             };
         } else if (event.keyCode === key.TAB && event.type == 'keydown' && event.shiftKey) {
                 if (editor.somethingSelected()){
                     var anchor = editor.getCursor("anchor");
                     var head = editor.getCursor("head");
                     if( anchor.line != head.line){
                         return false;
                     }
                 }
                 IPython.tooltip.request(that);
                 event.stop();
                 return true;
         } else if (event.keyCode === key.TAB && event.type == 'keydown') {
             // Tab completion.
             //Do not trim here because of tooltip
             if (editor.somethingSelected()){return false}
             var pre_cursor = editor.getRange({line:cur.line,ch:0},cur);
             if (pre_cursor.trim() === "") {
                 // Don't autocomplete if the part of the line before the cursor
                 // is empty.  In this case, let CodeMirror handle indentation.
                 return false;
             } else if ((pre_cursor.substr(-1) === "("|| pre_cursor.substr(-1) === " ") && IPython.config.tooltip_on_tab ) {
                 IPython.tooltip.request(that);
                 // Prevent the event from bubbling up.
                 event.stop();
                 // Prevent CodeMirror from handling the tab.
                 return true;
             } else {
                 event.stop();
                 this.completer.startCompletion();
                 return true;
             };
         } else {
             // keypress/keyup also trigger on TAB press, and we don't want to
             // use those to disable tab completion.
             return false;
         };
         return false;
     };
 
 
     // Kernel related calls.
 
     CodeCell.prototype.set_kernel = function (kernel) {
         this.kernel = kernel;
     }
 
     /**
      * Execute current code cell to the kernel
      * @method execute
      */
     CodeCell.prototype.execute = function () {
-        this.output_area.clear_output(true, true, true);
+        this.output_area.clear_output();
         this.set_input_prompt('*');
         this.element.addClass("running");
         var callbacks = {
             'execute_reply': $.proxy(this._handle_execute_reply, this),
             'output': $.proxy(this.output_area.handle_output, this.output_area),
             'clear_output': $.proxy(this.output_area.handle_clear_output, this.output_area),
             'set_next_input': $.proxy(this._handle_set_next_input, this),
             'input_request': $.proxy(this._handle_input_request, this)
         };
         var msg_id = this.kernel.execute(this.get_text(), callbacks, {silent: false, store_history: true});
     };
 
     /**
      * @method _handle_execute_reply
      * @private
      */
     CodeCell.prototype._handle_execute_reply = function (content) {
         this.set_input_prompt(content.execution_count);
         this.element.removeClass("running");
         $([IPython.events]).trigger('set_dirty.Notebook', {value: true});
     }
 
     /**
      * @method _handle_set_next_input
      * @private
      */
     CodeCell.prototype._handle_set_next_input = function (text) {
         var data = {'cell': this, 'text': text}
         $([IPython.events]).trigger('set_next_input.Notebook', data);
     }
 
     /**
      * @method _handle_input_request
      * @private
      */
     CodeCell.prototype._handle_input_request = function (content) {
         this.output_area.append_raw_input(content);
     }
 
 
     // Basic cell manipulation.
 
     CodeCell.prototype.select = function () {
         IPython.Cell.prototype.select.apply(this);
         this.code_mirror.refresh();
         this.code_mirror.focus();
         this.auto_highlight();
         // We used to need an additional refresh() after the focus, but
         // it appears that this has been fixed in CM. This bug would show
         // up on FF when a newly loaded markdown cell was edited.
     };
 
 
     CodeCell.prototype.select_all = function () {
         var start = {line: 0, ch: 0};
         var nlines = this.code_mirror.lineCount();
         var last_line = this.code_mirror.getLine(nlines-1);
         var end = {line: nlines-1, ch: last_line.length};
         this.code_mirror.setSelection(start, end);
     };
 
 
     CodeCell.prototype.collapse = function () {
         this.collapsed = true;
         this.output_area.collapse();
     };
 
 
     CodeCell.prototype.expand = function () {
         this.collapsed = false;
         this.output_area.expand();
     };
 
 
     CodeCell.prototype.toggle_output = function () {
         this.collapsed = Boolean(1 - this.collapsed);
         this.output_area.toggle_output();
     };
 
 
     CodeCell.prototype.toggle_output_scroll = function () {
     this.output_area.toggle_scroll();
     };
 
 
     CodeCell.input_prompt_classical = function (prompt_value, lines_number) {
         var ns = prompt_value || "&nbsp;";
         return 'In&nbsp;[' + ns + ']:'
     };
 
     CodeCell.input_prompt_continuation = function (prompt_value, lines_number) {
         var html = [CodeCell.input_prompt_classical(prompt_value, lines_number)];
         for(var i=1; i < lines_number; i++){html.push(['...:'])};
         return html.join('</br>')
     };
 
     CodeCell.input_prompt_function = CodeCell.input_prompt_classical;
 
 
     CodeCell.prototype.set_input_prompt = function (number) {
         var nline = 1
         if( this.code_mirror != undefined) {
            nline = this.code_mirror.lineCount();
         }
         this.input_prompt_number = number;
         var prompt_html = CodeCell.input_prompt_function(this.input_prompt_number, nline);
         this.element.find('div.input_prompt').html(prompt_html);
     };
 
 
     CodeCell.prototype.clear_input = function () {
         this.code_mirror.setValue('');
     };
 
 
     CodeCell.prototype.get_text = function () {
         return this.code_mirror.getValue();
     };
 
 
     CodeCell.prototype.set_text = function (code) {
         return this.code_mirror.setValue(code);
     };
 
 
     CodeCell.prototype.at_top = function () {
         var cursor = this.code_mirror.getCursor();
         if (cursor.line === 0 && cursor.ch === 0) {
             return true;
         } else {
             return false;
         }
     };
 
 
     CodeCell.prototype.at_bottom = function () {
         var cursor = this.code_mirror.getCursor();
         if (cursor.line === (this.code_mirror.lineCount()-1) && cursor.ch === this.code_mirror.getLine(cursor.line).length) {
             return true;
         } else {
             return false;
         }
     };
 
 
-    CodeCell.prototype.clear_output = function (stdout, stderr, other) {
-        this.output_area.clear_output(stdout, stderr, other);
+    CodeCell.prototype.clear_output = function () {
+        this.output_area.clear_output();
     };
 
 
     // JSON serialization
 
     CodeCell.prototype.fromJSON = function (data) {
         IPython.Cell.prototype.fromJSON.apply(this, arguments);
         if (data.cell_type === 'code') {
             if (data.input !== undefined) {
                 this.set_text(data.input);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 this.code_mirror.clearHistory();
                 this.auto_highlight();
             }
             if (data.prompt_number !== undefined) {
                 this.set_input_prompt(data.prompt_number);
             } else {
                 this.set_input_prompt();
             };
             this.output_area.fromJSON(data.outputs);
             if (data.collapsed !== undefined) {
                 if (data.collapsed) {
                     this.collapse();
                 } else {
                     this.expand();
                 };
             };
         };
     };
 
 
     CodeCell.prototype.toJSON = function () {
         var data = IPython.Cell.prototype.toJSON.apply(this);
         data.input = this.get_text();
         data.cell_type = 'code';
         if (this.input_prompt_number) {
             data.prompt_number = this.input_prompt_number;
         };
         var outputs = this.output_area.toJSON();
         data.outputs = outputs;
         data.language = 'python';
         data.collapsed = this.collapsed;
         return data;
     };
 
 
     IPython.CodeCell = CodeCell;
 
     return IPython;
 }(IPython));

IPython/html/static/notebook/js/notebook.js

@@ -1,2077 +1,2077 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008-2011  The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // Notebook
 //============================================================================
 
 var IPython = (function (IPython) {
     "use strict";
 
     var utils = IPython.utils;
     var key   = IPython.utils.keycodes;
 
     /**
      * A notebook contains and manages cells.
      * 
      * @class Notebook
      * @constructor
      * @param {String} selector A jQuery selector for the notebook's DOM element
      * @param {Object} [options] A config object
      */
     var Notebook = function (selector, options) {
         var options = options || {};
         this._baseProjectUrl = options.baseProjectUrl;
 
         this.element = $(selector);
         this.element.scroll();
         this.element.data("notebook", this);
         this.next_prompt_number = 1;
         this.kernel = null;
         this.clipboard = null;
         this.undelete_backup = null;
         this.undelete_index = null;
         this.undelete_below = false;
         this.paste_enabled = false;
         this.set_dirty(false);
         this.metadata = {};
         this._checkpoint_after_save = false;
         this.last_checkpoint = null;
         this.checkpoints = [];
         this.autosave_interval = 0;
         this.autosave_timer = null;
         // autosave *at most* every two minutes
         this.minimum_autosave_interval = 120000;
         // single worksheet for now
         this.worksheet_metadata = {};
         this.control_key_active = false;
         this.notebook_id = null;
         this.notebook_name = null;
         this.notebook_name_blacklist_re = /[\/\\:]/;
         this.nbformat = 3 // Increment this when changing the nbformat
         this.nbformat_minor = 0 // Increment this when changing the nbformat
         this.style();
         this.create_elements();
         this.bind_events();
     };
 
     /**
      * Tweak the notebook's CSS style.
      * 
      * @method style
      */
     Notebook.prototype.style = function () {
         $('div#notebook').addClass('border-box-sizing');
     };
 
     /**
      * Get the root URL of the notebook server.
      * 
      * @method baseProjectUrl
      * @return {String} The base project URL
      */
     Notebook.prototype.baseProjectUrl = function(){
         return this._baseProjectUrl || $('body').data('baseProjectUrl');
     };
 
     /**
      * Create an HTML and CSS representation of the notebook.
      * 
      * @method create_elements
      */
     Notebook.prototype.create_elements = function () {
         // We add this end_space div to the end of the notebook div to:
         // i) provide a margin between the last cell and the end of the notebook
         // ii) to prevent the div from scrolling up when the last cell is being
         // edited, but is too low on the page, which browsers will do automatically.
         var that = this;
         this.container = $("<div/>").addClass("container").attr("id", "notebook-container");
         var end_space = $('<div/>').addClass('end_space');
         end_space.dblclick(function (e) {
             var ncells = that.ncells();
             that.insert_cell_below('code',ncells-1);
         });
         this.element.append(this.container);
         this.container.append(end_space);
         $('div#notebook').addClass('border-box-sizing');
     };
 
     /**
      * Bind JavaScript events: key presses and custom IPython events.
      * 
      * @method bind_events
      */
     Notebook.prototype.bind_events = function () {
         var that = this;
 
         $([IPython.events]).on('set_next_input.Notebook', function (event, data) {
             var index = that.find_cell_index(data.cell);
             var new_cell = that.insert_cell_below('code',index);
             new_cell.set_text(data.text);
             that.dirty = true;
         });
 
         $([IPython.events]).on('set_dirty.Notebook', function (event, data) {
             that.dirty = data.value;
         });
 
         $([IPython.events]).on('select.Cell', function (event, data) {
             var index = that.find_cell_index(data.cell);
             that.select(index);
         });
         
         $([IPython.events]).on('status_autorestarting.Kernel', function () {
             IPython.dialog.modal({
                 title: "Kernel Restarting",
                 body: "The kernel appears to have died. It will restart automatically.",
                 buttons: {
                     OK : {
                         class : "btn-primary"
                     }
                 }
             });
         });
 
 
         $(document).keydown(function (event) {
 
             // Save (CTRL+S) or (AppleKey+S)
             //metaKey = applekey on mac
             if ((event.ctrlKey || event.metaKey) && event.keyCode==83) {
                 that.save_checkpoint();
                 event.preventDefault();
                 return false;
             } else if (event.which === key.ESC) {
                 // Intercept escape at highest level to avoid closing
                 // websocket connection with firefox
                 IPython.pager.collapse();
                 event.preventDefault();
             } else if (event.which === key.SHIFT) {
                 // ignore shift keydown
                 return true;
             }
             if (event.which === key.UPARROW && !event.shiftKey) {
                 var cell = that.get_selected_cell();
                 if (cell && cell.at_top()) {
                     event.preventDefault();
                     that.select_prev();
                 };
             } else if (event.which === key.DOWNARROW && !event.shiftKey) {
                 var cell = that.get_selected_cell();
                 if (cell && cell.at_bottom()) {
                     event.preventDefault();
                     that.select_next();
                 };
             } else if (event.which === key.ENTER && event.shiftKey) {
                 that.execute_selected_cell();
                 return false;
             } else if (event.which === key.ENTER && event.altKey) {
                 // Execute code cell, and insert new in place
                 that.execute_selected_cell();
                  // Only insert a new cell, if we ended up in an already populated cell
                 if (/\S/.test(that.get_selected_cell().get_text()) == true) {
                     that.insert_cell_above('code');
                 }
                 return false;
             } else if (event.which === key.ENTER && event.ctrlKey) {
                 that.execute_selected_cell({terminal:true});
                 return false;
             } else if (event.which === 77 && event.ctrlKey && that.control_key_active == false) {
                 that.control_key_active = true;
                 return false;
             } else if (event.which === 88 && that.control_key_active) {
                 // Cut selected cell = x
                 that.cut_cell();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 67 && that.control_key_active) {
                 // Copy selected cell = c
                 that.copy_cell();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 86 && that.control_key_active) {
                 // Paste below selected cell = v
                 that.paste_cell_below();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 68 && that.control_key_active) {
                 // Delete selected cell = d
                 that.delete_cell();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 65 && that.control_key_active) {
                 // Insert code cell above selected = a
                 that.insert_cell_above('code');
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 66 && that.control_key_active) {
                 // Insert code cell below selected = b
                 that.insert_cell_below('code');
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 89 && that.control_key_active) {
                 // To code = y
                 that.to_code();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 77 && that.control_key_active) {
                 // To markdown = m
                 that.to_markdown();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 84 && that.control_key_active) {
                 // To Raw = t
                 that.to_raw();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 49 && that.control_key_active) {
                 // To Heading 1 = 1
                 that.to_heading(undefined, 1);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 50 && that.control_key_active) {
                 // To Heading 2 = 2
                 that.to_heading(undefined, 2);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 51 && that.control_key_active) {
                 // To Heading 3 = 3
                 that.to_heading(undefined, 3);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 52 && that.control_key_active) {
                 // To Heading 4 = 4
                 that.to_heading(undefined, 4);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 53 && that.control_key_active) {
                 // To Heading 5 = 5
                 that.to_heading(undefined, 5);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 54 && that.control_key_active) {
                 // To Heading 6 = 6
                 that.to_heading(undefined, 6);
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 79 && that.control_key_active) {
                 // Toggle output = o
                 if (event.shiftKey){
                     that.toggle_output_scroll();
                 } else {
                     that.toggle_output();
                 }
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 83 && that.control_key_active) {
                 // Save notebook = s
                 that.save_checkpoint();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 74 && that.control_key_active) {
                 // Move cell down = j
                 that.move_cell_down();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 75 && that.control_key_active) {
                 // Move cell up = k
                 that.move_cell_up();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 80 && that.control_key_active) {
                 // Select previous = p
                 that.select_prev();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 78 && that.control_key_active) {
                 // Select next = n
                 that.select_next();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 76 && that.control_key_active) {
                 // Toggle line numbers = l
                 that.cell_toggle_line_numbers();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 73 && that.control_key_active) {
                 // Interrupt kernel = i
                 that.kernel.interrupt();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 190 && that.control_key_active) {
                 // Restart kernel = .  # matches qt console
                 that.restart_kernel();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 72 && that.control_key_active) {
                 // Show keyboard shortcuts = h
                 IPython.quick_help.show_keyboard_shortcuts();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 90 && that.control_key_active) {
                 // Undo last cell delete = z
                 that.undelete();
                 that.control_key_active = false;
                 return false;
             } else if (event.which === 189 && that.control_key_active) {
                 // Split cell = -
                 that.split_cell();
                 that.control_key_active = false;
                 return false;                                               
             } else if (that.control_key_active) {
                 that.control_key_active = false;
                 return true;
             }
             return true;
         });
         
         var collapse_time = function(time){
             var app_height = $('#ipython-main-app').height(); // content height
             var splitter_height = $('div#pager_splitter').outerHeight(true);
             var new_height = app_height - splitter_height;
             that.element.animate({height : new_height + 'px'}, time);
         }
 
         this.element.bind('collapse_pager', function (event,extrap) {
             var time = (extrap != undefined) ? ((extrap.duration != undefined ) ? extrap.duration : 'fast') : 'fast';
             collapse_time(time);
         });
 
         var expand_time = function(time) {
             var app_height = $('#ipython-main-app').height(); // content height
             var splitter_height = $('div#pager_splitter').outerHeight(true);
             var pager_height = $('div#pager').outerHeight(true);
             var new_height = app_height - pager_height - splitter_height;
             that.element.animate({height : new_height + 'px'}, time);
         }
 
         this.element.bind('expand_pager', function (event, extrap) {
             var time = (extrap != undefined) ? ((extrap.duration != undefined ) ? extrap.duration : 'fast') : 'fast';
             expand_time(time);
         });
         
         // Firefox 22 broke $(window).on("beforeunload")
         // I'm not sure why or how.
         window.onbeforeunload = function (e) {
             // TODO: Make killing the kernel configurable.
             var kill_kernel = false;
             if (kill_kernel) {
                 that.kernel.kill();
             }
             // if we are autosaving, trigger an autosave on nav-away.
             // still warn, because if we don't the autosave may fail.
             if (that.dirty) {
                 if ( that.autosave_interval ) {
                     // schedule autosave in a timeout
                     // this gives you a chance to forcefully discard changes
                     // by reloading the page if you *really* want to.
                     // the timer doesn't start until you *dismiss* the dialog.
                     setTimeout(function () {
                         if (that.dirty) {
                             that.save_notebook();
                         }
                     }, 1000);
                     return "Autosave in progress, latest changes may be lost.";
                 } else {
                     return "Unsaved changes will be lost.";
                 }
             };
             // Null is the *only* return value that will make the browser not
             // pop up the "don't leave" dialog.
             return null;
         };
     };
 
     /**
      * Set the dirty flag, and trigger the set_dirty.Notebook event
      * 
      * @method set_dirty
      */
     Notebook.prototype.set_dirty = function (value) {
         if (value === undefined) {
             value = true;
         }
         if (this.dirty == value) {
             return;
         }
         $([IPython.events]).trigger('set_dirty.Notebook', {value: value});
     };
 
     /**
      * Scroll the top of the page to a given cell.
      * 
      * @method scroll_to_cell
      * @param {Number} cell_number An index of the cell to view
      * @param {Number} time Animation time in milliseconds
      * @return {Number} Pixel offset from the top of the container
      */
     Notebook.prototype.scroll_to_cell = function (cell_number, time) {
         var cells = this.get_cells();
         var time = time || 0;
         cell_number = Math.min(cells.length-1,cell_number);
         cell_number = Math.max(0             ,cell_number);
         var scroll_value = cells[cell_number].element.position().top-cells[0].element.position().top ;
         this.element.animate({scrollTop:scroll_value}, time);
         return scroll_value;
     };
 
     /**
      * Scroll to the bottom of the page.
      * 
      * @method scroll_to_bottom
      */
     Notebook.prototype.scroll_to_bottom = function () {
         this.element.animate({scrollTop:this.element.get(0).scrollHeight}, 0);
     };
 
     /**
      * Scroll to the top of the page.
      * 
      * @method scroll_to_top
      */
     Notebook.prototype.scroll_to_top = function () {
         this.element.animate({scrollTop:0}, 0);
     };
 
 
     // Cell indexing, retrieval, etc.
 
     /**
      * Get all cell elements in the notebook.
      * 
      * @method get_cell_elements
      * @return {jQuery} A selector of all cell elements
      */
     Notebook.prototype.get_cell_elements = function () {
         return this.container.children("div.cell");
     };
 
     /**
      * Get a particular cell element.
      * 
      * @method get_cell_element
      * @param {Number} index An index of a cell to select
      * @return {jQuery} A selector of the given cell.
      */
     Notebook.prototype.get_cell_element = function (index) {
         var result = null;
         var e = this.get_cell_elements().eq(index);
         if (e.length !== 0) {
             result = e;
         }
         return result;
     };
 
     /**
      * Count the cells in this notebook.
      * 
      * @method ncells
      * @return {Number} The number of cells in this notebook
      */
     Notebook.prototype.ncells = function () {
         return this.get_cell_elements().length;
     };
 
     /**
      * Get all Cell objects in this notebook.
      * 
      * @method get_cells
      * @return {Array} This notebook's Cell objects
      */
     // TODO: we are often calling cells as cells()[i], which we should optimize
     // to cells(i) or a new method.
     Notebook.prototype.get_cells = function () {
         return this.get_cell_elements().toArray().map(function (e) {
             return $(e).data("cell");
         });
     };
 
     /**
      * Get a Cell object from this notebook.
      * 
      * @method get_cell
      * @param {Number} index An index of a cell to retrieve
      * @return {Cell} A particular cell
      */
     Notebook.prototype.get_cell = function (index) {
         var result = null;
         var ce = this.get_cell_element(index);
         if (ce !== null) {
             result = ce.data('cell');
         }
         return result;
     }
 
     /**
      * Get the cell below a given cell.
      * 
      * @method get_next_cell
      * @param {Cell} cell The provided cell
      * @return {Cell} The next cell
      */
     Notebook.prototype.get_next_cell = function (cell) {
         var result = null;
         var index = this.find_cell_index(cell);
         if (this.is_valid_cell_index(index+1)) {
             result = this.get_cell(index+1);
         }
         return result;
     }
 
     /**
      * Get the cell above a given cell.
      * 
      * @method get_prev_cell
      * @param {Cell} cell The provided cell
      * @return {Cell} The previous cell
      */
     Notebook.prototype.get_prev_cell = function (cell) {
         // TODO: off-by-one
         // nb.get_prev_cell(nb.get_cell(1)) is null
         var result = null;
         var index = this.find_cell_index(cell);
         if (index !== null && index > 1) {
             result = this.get_cell(index-1);
         }
         return result;
     }
     
     /**
      * Get the numeric index of a given cell.
      * 
      * @method find_cell_index
      * @param {Cell} cell The provided cell
      * @return {Number} The cell's numeric index
      */
     Notebook.prototype.find_cell_index = function (cell) {
         var result = null;
         this.get_cell_elements().filter(function (index) {
             if ($(this).data("cell") === cell) {
                 result = index;
             };
         });
         return result;
     };
 
     /**
      * Get a given index , or the selected index if none is provided.
      * 
      * @method index_or_selected
      * @param {Number} index A cell's index
      * @return {Number} The given index, or selected index if none is provided.
      */
     Notebook.prototype.index_or_selected = function (index) {
         var i;
         if (index === undefined || index === null) {
             i = this.get_selected_index();
             if (i === null) {
                 i = 0;
             }
         } else {
             i = index;
         }
         return i;
     };
 
     /**
      * Get the currently selected cell.
      * @method get_selected_cell
      * @return {Cell} The selected cell
      */
     Notebook.prototype.get_selected_cell = function () {
         var index = this.get_selected_index();
         return this.get_cell(index);
     };
 
     /**
      * Check whether a cell index is valid.
      * 
      * @method is_valid_cell_index
      * @param {Number} index A cell index
      * @return True if the index is valid, false otherwise
      */
     Notebook.prototype.is_valid_cell_index = function (index) {
         if (index !== null && index >= 0 && index < this.ncells()) {
             return true;
         } else {
             return false;
         };
     }
 
     /**
      * Get the index of the currently selected cell.
      
      * @method get_selected_index
      * @return {Number} The selected cell's numeric index
      */
     Notebook.prototype.get_selected_index = function () {
         var result = null;
         this.get_cell_elements().filter(function (index) {
             if ($(this).data("cell").selected === true) {
                 result = index;
             };
         });
         return result;
     };
 
 
     // Cell selection.
 
     /**
      * Programmatically select a cell.
      * 
      * @method select
      * @param {Number} index A cell's index
      * @return {Notebook} This notebook
      */
     Notebook.prototype.select = function (index) {
         if (this.is_valid_cell_index(index)) {
             var sindex = this.get_selected_index()
             if (sindex !== null && index !== sindex) {
                 this.get_cell(sindex).unselect();
             };
             var cell = this.get_cell(index);
             cell.select();
             if (cell.cell_type === 'heading') {
                 $([IPython.events]).trigger('selected_cell_type_changed.Notebook',
                     {'cell_type':cell.cell_type,level:cell.level}
                 );
             } else {
                 $([IPython.events]).trigger('selected_cell_type_changed.Notebook',
                     {'cell_type':cell.cell_type}
                 );
             };
         };
         return this;
     };
 
     /**
      * Programmatically select the next cell.
      *
      * @method select_next
      * @return {Notebook} This notebook
      */
     Notebook.prototype.select_next = function () {
         var index = this.get_selected_index();
         this.select(index+1);
         return this;
     };
 
     /**
      * Programmatically select the previous cell.
      *
      * @method select_prev
      * @return {Notebook} This notebook
      */
     Notebook.prototype.select_prev = function () {
         var index = this.get_selected_index();
         this.select(index-1);
         return this;
     };
 
 
     // Cell movement
 
     /**
      * Move given (or selected) cell up and select it.
      * 
      * @method move_cell_up
      * @param [index] {integer} cell index
      * @return {Notebook} This notebook
      **/
     Notebook.prototype.move_cell_up = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i) && i > 0) {
             var pivot = this.get_cell_element(i-1);
             var tomove = this.get_cell_element(i);
             if (pivot !== null && tomove !== null) {
                 tomove.detach();
                 pivot.before(tomove);
                 this.select(i-1);
             };
             this.set_dirty(true);
         };
         return this;
     };
 
 
     /**
      * Move given (or selected) cell down and select it
      * 
      * @method move_cell_down
      * @param [index] {integer} cell index
      * @return {Notebook} This notebook
      **/
     Notebook.prototype.move_cell_down = function (index) {
         var i = this.index_or_selected(index);
         if ( this.is_valid_cell_index(i) && this.is_valid_cell_index(i+1)) {
             var pivot = this.get_cell_element(i+1);
             var tomove = this.get_cell_element(i);
             if (pivot !== null && tomove !== null) {
                 tomove.detach();
                 pivot.after(tomove);
                 this.select(i+1);
             };
         };
         this.set_dirty();
         return this;
     };
 
 
     // Insertion, deletion.
 
     /**
      * Delete a cell from the notebook.
      * 
      * @method delete_cell
      * @param [index] A cell's numeric index
      * @return {Notebook} This notebook
      */
     Notebook.prototype.delete_cell = function (index) {
         var i = this.index_or_selected(index);
         var cell = this.get_selected_cell();
         this.undelete_backup = cell.toJSON();
         $('#undelete_cell').removeClass('disabled');
         if (this.is_valid_cell_index(i)) {
             var ce = this.get_cell_element(i);
             ce.remove();
             if (i === (this.ncells())) {
                 this.select(i-1);
                 this.undelete_index = i - 1;
                 this.undelete_below = true;
             } else {
                 this.select(i);
                 this.undelete_index = i;
                 this.undelete_below = false;
             };
             $([IPython.events]).trigger('delete.Cell', {'cell': cell, 'index': i});
             this.set_dirty(true);
         };
         return this;
     };
 
     /**
      * Insert a cell so that after insertion the cell is at given index.
      *
      * Similar to insert_above, but index parameter is mandatory
      *
      * Index will be brought back into the accissible range [0,n]
      *
      * @method insert_cell_at_index
      * @param type {string} in ['code','markdown','heading']
      * @param [index] {int} a valid index where to inser cell
      *
      * @return cell {cell|null} created cell or null
      **/
     Notebook.prototype.insert_cell_at_index = function(type, index){
 
         var ncells = this.ncells();
         var index = Math.min(index,ncells);
             index = Math.max(index,0);
         var cell = null;
 
         if (ncells === 0 || this.is_valid_cell_index(index) || index === ncells) {
             if (type === 'code') {
                 cell = new IPython.CodeCell(this.kernel);
                 cell.set_input_prompt();
             } else if (type === 'markdown') {
                 cell = new IPython.MarkdownCell();
             } else if (type === 'raw') {
                 cell = new IPython.RawCell();
             } else if (type === 'heading') {
                 cell = new IPython.HeadingCell();
             }
 
             if(this._insert_element_at_index(cell.element,index)){
                 cell.render();
                 this.select(this.find_cell_index(cell));
                 $([IPython.events]).trigger('create.Cell', {'cell': cell, 'index': index});
                 this.set_dirty(true);
             }
         }
         return cell;
 
     };
 
     /**
      * Insert an element at given cell index.
      *
      * @method _insert_element_at_index
      * @param element {dom element} a cell element
      * @param [index] {int} a valid index where to inser cell
      * @private
      *
      * return true if everything whent fine.
      **/
     Notebook.prototype._insert_element_at_index = function(element, index){
         if (element === undefined){
             return false;
         }
 
         var ncells = this.ncells();
 
         if (ncells === 0) {
             // special case append if empty
             this.element.find('div.end_space').before(element);
         } else if ( ncells === index ) {
             // special case append it the end, but not empty
             this.get_cell_element(index-1).after(element);
         } else if (this.is_valid_cell_index(index)) {
             // otherwise always somewhere to append to
             this.get_cell_element(index).before(element);
         } else {
             return false;
         }
 
         if (this.undelete_index !== null && index <= this.undelete_index) {
             this.undelete_index = this.undelete_index + 1;
             this.set_dirty(true);
         }
         return true;
     };
 
     /**
      * Insert a cell of given type above given index, or at top
      * of notebook if index smaller than 0.
      *
      * default index value is the one of currently selected cell
      *
      * @method insert_cell_above
      * @param type {string} cell type
      * @param [index] {integer}
      *
      * @return handle to created cell or null
      **/
     Notebook.prototype.insert_cell_above = function (type, index) {
         index = this.index_or_selected(index);
         return this.insert_cell_at_index(type, index);
     };
 
     /**
      * Insert a cell of given type below given index, or at bottom
      * of notebook if index greater thatn number of cell
      *
      * default index value is the one of currently selected cell
      *
      * @method insert_cell_below
      * @param type {string} cell type
      * @param [index] {integer}
      *
      * @return handle to created cell or null
      *
      **/
     Notebook.prototype.insert_cell_below = function (type, index) {
         index = this.index_or_selected(index);
         return this.insert_cell_at_index(type, index+1);
     };
 
 
     /**
      * Insert cell at end of notebook
      *
      * @method insert_cell_at_bottom
      * @param {String} type cell type
      *
      * @return the added cell; or null
      **/
     Notebook.prototype.insert_cell_at_bottom = function (type){
         var len = this.ncells();
         return this.insert_cell_below(type,len-1);
     };
 
     /**
      * Turn a cell into a code cell.
      * 
      * @method to_code
      * @param {Number} [index] A cell's index
      */
     Notebook.prototype.to_code = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             if (!(source_cell instanceof IPython.CodeCell)) {
                 var target_cell = this.insert_cell_below('code',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 }
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
         };
     };
 
     /**
      * Turn a cell into a Markdown cell.
      * 
      * @method to_markdown
      * @param {Number} [index] A cell's index
      */
     Notebook.prototype.to_markdown = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             if (!(source_cell instanceof IPython.MarkdownCell)) {
                 var target_cell = this.insert_cell_below('markdown',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 };
                 // The edit must come before the set_text.
                 target_cell.edit();
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
         };
     };
 
     /**
      * Turn a cell into a raw text cell.
      * 
      * @method to_raw
      * @param {Number} [index] A cell's index
      */
     Notebook.prototype.to_raw = function (index) {
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             var target_cell = null;
             if (!(source_cell instanceof IPython.RawCell)) {
                 target_cell = this.insert_cell_below('raw',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 };
                 // The edit must come before the set_text.
                 target_cell.edit();
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
         };
     };
 
     /**
      * Turn a cell into a heading cell.
      * 
      * @method to_heading
      * @param {Number} [index] A cell's index
      * @param {Number} [level] A heading level (e.g., 1 becomes &lt;h1&gt;)
      */
     Notebook.prototype.to_heading = function (index, level) {
         level = level || 1;
         var i = this.index_or_selected(index);
         if (this.is_valid_cell_index(i)) {
             var source_element = this.get_cell_element(i);
             var source_cell = source_element.data("cell");
             var target_cell = null;
             if (source_cell instanceof IPython.HeadingCell) {
                 source_cell.set_level(level);
             } else {
                 target_cell = this.insert_cell_below('heading',i);
                 var text = source_cell.get_text();
                 if (text === source_cell.placeholder) {
                     text = '';
                 };
                 // The edit must come before the set_text.
                 target_cell.set_level(level);
                 target_cell.edit();
                 target_cell.set_text(text);
                 // make this value the starting point, so that we can only undo
                 // to this state, instead of a blank cell
                 target_cell.code_mirror.clearHistory();
                 source_element.remove();
                 this.set_dirty(true);
             };
             $([IPython.events]).trigger('selected_cell_type_changed.Notebook',
                 {'cell_type':'heading',level:level}
             );
         };
     };
 
 
     // Cut/Copy/Paste
 
     /**
      * Enable UI elements for pasting cells.
      * 
      * @method enable_paste
      */
     Notebook.prototype.enable_paste = function () {
         var that = this;
         if (!this.paste_enabled) {
             $('#paste_cell_replace').removeClass('disabled')
                 .on('click', function () {that.paste_cell_replace();});
             $('#paste_cell_above').removeClass('disabled')
                 .on('click', function () {that.paste_cell_above();});
             $('#paste_cell_below').removeClass('disabled')
                 .on('click', function () {that.paste_cell_below();});
             this.paste_enabled = true;
         };
     };
 
     /**
      * Disable UI elements for pasting cells.
      * 
      * @method disable_paste
      */
     Notebook.prototype.disable_paste = function () {
         if (this.paste_enabled) {
             $('#paste_cell_replace').addClass('disabled').off('click');
             $('#paste_cell_above').addClass('disabled').off('click');
             $('#paste_cell_below').addClass('disabled').off('click');
             this.paste_enabled = false;
         };
     };
 
     /**
      * Cut a cell.
      * 
      * @method cut_cell
      */
     Notebook.prototype.cut_cell = function () {
         this.copy_cell();
         this.delete_cell();
     }
 
     /**
      * Copy a cell.
      * 
      * @method copy_cell
      */
     Notebook.prototype.copy_cell = function () {
         var cell = this.get_selected_cell();
         this.clipboard = cell.toJSON();
         this.enable_paste();
     };
 
     /**
      * Replace the selected cell with a cell in the clipboard.
      * 
      * @method paste_cell_replace
      */
     Notebook.prototype.paste_cell_replace = function () {
         if (this.clipboard !== null && this.paste_enabled) {
             var cell_data = this.clipboard;
             var new_cell = this.insert_cell_above(cell_data.cell_type);
             new_cell.fromJSON(cell_data);
             var old_cell = this.get_next_cell(new_cell);
             this.delete_cell(this.find_cell_index(old_cell));
             this.select(this.find_cell_index(new_cell));
         };
     };
 
     /**
      * Paste a cell from the clipboard above the selected cell.
      * 
      * @method paste_cell_above
      */
     Notebook.prototype.paste_cell_above = function () {
         if (this.clipboard !== null && this.paste_enabled) {
             var cell_data = this.clipboard;
             var new_cell = this.insert_cell_above(cell_data.cell_type);
             new_cell.fromJSON(cell_data);
         };
     };
 
     /**
      * Paste a cell from the clipboard below the selected cell.
      * 
      * @method paste_cell_below
      */
     Notebook.prototype.paste_cell_below = function () {
         if (this.clipboard !== null && this.paste_enabled) {
             var cell_data = this.clipboard;
             var new_cell = this.insert_cell_below(cell_data.cell_type);
             new_cell.fromJSON(cell_data);
         };
     };
 
     // Cell undelete
 
     /**
      * Restore the most recently deleted cell.
      * 
      * @method undelete
      */
     Notebook.prototype.undelete = function() {
         if (this.undelete_backup !== null && this.undelete_index !== null) {
             var current_index = this.get_selected_index();
             if (this.undelete_index < current_index) {
                 current_index = current_index + 1;
             }
             if (this.undelete_index >= this.ncells()) {
                 this.select(this.ncells() - 1);
             }
             else {
                 this.select(this.undelete_index);
             }
             var cell_data = this.undelete_backup;
             var new_cell = null;
             if (this.undelete_below) {
                 new_cell = this.insert_cell_below(cell_data.cell_type);
             } else {
                 new_cell = this.insert_cell_above(cell_data.cell_type);
             }
             new_cell.fromJSON(cell_data);
             this.select(current_index);
             this.undelete_backup = null;
             this.undelete_index = null;
         }
         $('#undelete_cell').addClass('disabled');
     }
 
     // Split/merge
 
     /**
      * Split the selected cell into two, at the cursor.
      * 
      * @method split_cell
      */
     Notebook.prototype.split_cell = function () {
         // Todo: implement spliting for other cell types.
         var cell = this.get_selected_cell();
         if (cell.is_splittable()) {
             var texta = cell.get_pre_cursor();
             var textb = cell.get_post_cursor();
             if (cell instanceof IPython.CodeCell) {
                 cell.set_text(texta);
                 var new_cell = this.insert_cell_below('code');
                 new_cell.set_text(textb);
             } else if (cell instanceof IPython.MarkdownCell) {
                 cell.set_text(texta);
                 cell.render();
                 var new_cell = this.insert_cell_below('markdown');
                 new_cell.edit(); // editor must be visible to call set_text
                 new_cell.set_text(textb);
                 new_cell.render();
             }
         };
     };
 
     /**
      * Combine the selected cell into the cell above it.
      * 
      * @method merge_cell_above
      */
     Notebook.prototype.merge_cell_above = function () {
         var index = this.get_selected_index();
         var cell = this.get_cell(index);
         if (!cell.is_mergeable()) {
             return;
         }
         if (index > 0) {
             var upper_cell = this.get_cell(index-1);
             if (!upper_cell.is_mergeable()) {
                 return;
             }
             var upper_text = upper_cell.get_text();
             var text = cell.get_text();
             if (cell instanceof IPython.CodeCell) {
                 cell.set_text(upper_text+'\n'+text);
             } else if (cell instanceof IPython.MarkdownCell) {
                 cell.edit();
                 cell.set_text(upper_text+'\n'+text);
                 cell.render();
             };
             this.delete_cell(index-1);
             this.select(this.find_cell_index(cell));
         };
     };
 
     /**
      * Combine the selected cell into the cell below it.
      * 
      * @method merge_cell_below
      */
     Notebook.prototype.merge_cell_below = function () {
         var index = this.get_selected_index();
         var cell = this.get_cell(index);
         if (!cell.is_mergeable()) {
             return;
         }
         if (index < this.ncells()-1) {
             var lower_cell = this.get_cell(index+1);
             if (!lower_cell.is_mergeable()) {
                 return;
             }
             var lower_text = lower_cell.get_text();
             var text = cell.get_text();
             if (cell instanceof IPython.CodeCell) {
                 cell.set_text(text+'\n'+lower_text);
             } else if (cell instanceof IPython.MarkdownCell) {
                 cell.edit();
                 cell.set_text(text+'\n'+lower_text);
                 cell.render();
             };
             this.delete_cell(index+1);
             this.select(this.find_cell_index(cell));
         };
     };
 
 
     // Cell collapsing and output clearing
 
     /**
      * Hide a cell's output.
      * 
      * @method collapse
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.collapse = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).collapse();
         this.set_dirty(true);
     };
 
     /**
      * Show a cell's output.
      * 
      * @method expand
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.expand = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).expand();
         this.set_dirty(true);
     };
 
     /** Toggle whether a cell's output is collapsed or expanded.
      * 
      * @method toggle_output
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.toggle_output = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).toggle_output();
         this.set_dirty(true);
     };
 
     /**
      * Toggle a scrollbar for long cell outputs.
      * 
      * @method toggle_output_scroll
      * @param {Number} index A cell's numeric index
      */
     Notebook.prototype.toggle_output_scroll = function (index) {
         var i = this.index_or_selected(index);
         this.get_cell(i).toggle_output_scroll();
     };
 
     /**
      * Hide each code cell's output area.
      * 
      * @method collapse_all_output
      */
     Notebook.prototype.collapse_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].output_area.collapse();
             }
         };
         // this should not be set if the `collapse` key is removed from nbformat
         this.set_dirty(true);
     };
 
     /**
      * Expand each code cell's output area, and add a scrollbar for long output.
      * 
      * @method scroll_all_output
      */
     Notebook.prototype.scroll_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].output_area.expand();
                 cells[i].output_area.scroll_if_long();
             }
         };
         // this should not be set if the `collapse` key is removed from nbformat
         this.set_dirty(true);
     };
 
     /**
      * Expand each code cell's output area, and remove scrollbars.
      * 
      * @method expand_all_output
      */
     Notebook.prototype.expand_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
                 cells[i].output_area.expand();
                 cells[i].output_area.unscroll_area();
             }
         };
         // this should not be set if the `collapse` key is removed from nbformat
         this.set_dirty(true);
     };
 
     /**
      * Clear each code cell's output area.
      * 
      * @method clear_all_output
      */
     Notebook.prototype.clear_all_output = function () {
         var ncells = this.ncells();
         var cells = this.get_cells();
         for (var i=0; i<ncells; i++) {
             if (cells[i] instanceof IPython.CodeCell) {
-                cells[i].clear_output(true,true,true);
+                cells[i].clear_output();
                 // Make all In[] prompts blank, as well
                 // TODO: make this configurable (via checkbox?)
                 cells[i].set_input_prompt();
             }
         };
         this.set_dirty(true);
     };
 
 
     // Other cell functions: line numbers, ...
 
     /**
      * Toggle line numbers in the selected cell's input area.
      * 
      * @method cell_toggle_line_numbers
      */
     Notebook.prototype.cell_toggle_line_numbers = function() {
         this.get_selected_cell().toggle_line_numbers();
     };
 
     // Kernel related things
 
     /**
      * Start a new kernel and set it on each code cell.
      * 
      * @method start_kernel
      */
     Notebook.prototype.start_kernel = function () {
         var base_url = $('body').data('baseKernelUrl') + "kernels";
         this.kernel = new IPython.Kernel(base_url);
         this.kernel.start(this.notebook_id);
         // Now that the kernel has been created, tell the CodeCells about it.
         var ncells = this.ncells();
         for (var i=0; i<ncells; i++) {
             var cell = this.get_cell(i);
             if (cell instanceof IPython.CodeCell) {
                 cell.set_kernel(this.kernel)
             };
         };
     };
 
     /**
      * Prompt the user to restart the IPython kernel.
      * 
      * @method restart_kernel
      */
     Notebook.prototype.restart_kernel = function () {
         var that = this;
         IPython.dialog.modal({
             title : "Restart kernel or continue running?",
             body : $("<p/>").html(
                 'Do you want to restart the current kernel?  You will lose all variables defined in it.'
             ),
             buttons : {
                 "Continue running" : {},
                 "Restart" : {
                     "class" : "btn-danger",
                     "click" : function() {
                         that.kernel.restart();
                     }
                 }
             }
         });
     };
 
     /**
      * Run the selected cell.
      * 
      * Execute or render cell outputs.
      * 
      * @method execute_selected_cell
      * @param {Object} options Customize post-execution behavior
      */
     Notebook.prototype.execute_selected_cell = function (options) {
         // add_new: should a new cell be added if we are at the end of the nb
         // terminal: execute in terminal mode, which stays in the current cell
         var default_options = {terminal: false, add_new: true};
         $.extend(default_options, options);
         var that = this;
         var cell = that.get_selected_cell();
         var cell_index = that.find_cell_index(cell);
         if (cell instanceof IPython.CodeCell) {
             cell.execute();
         }
         if (default_options.terminal) {
             cell.select_all();
         } else {
             if ((cell_index === (that.ncells()-1)) && default_options.add_new) {
                 that.insert_cell_below('code');
                 // If we are adding a new cell at the end, scroll down to show it.
                 that.scroll_to_bottom();
             } else {
                 that.select(cell_index+1);
             };
         };
         this.set_dirty(true);
     };
 
     /**
      * Execute all cells below the selected cell.
      * 
      * @method execute_cells_below
      */
     Notebook.prototype.execute_cells_below = function () {
         this.execute_cell_range(this.get_selected_index(), this.ncells());
         this.scroll_to_bottom();
     };
 
     /**
      * Execute all cells above the selected cell.
      * 
      * @method execute_cells_above
      */
     Notebook.prototype.execute_cells_above = function () {
         this.execute_cell_range(0, this.get_selected_index());
     };
 
     /**
      * Execute all cells.
      * 
      * @method execute_all_cells
      */
     Notebook.prototype.execute_all_cells = function () {
         this.execute_cell_range(0, this.ncells());
         this.scroll_to_bottom();
     };
 
     /**
      * Execute a contiguous range of cells.
      * 
      * @method execute_cell_range
      * @param {Number} start Index of the first cell to execute (inclusive)
      * @param {Number} end Index of the last cell to execute (exclusive)
      */
     Notebook.prototype.execute_cell_range = function (start, end) {
         for (var i=start; i<end; i++) {
             this.select(i);
             this.execute_selected_cell({add_new:false});
         };
     };
 
     // Persistance and loading
 
     /**
      * Getter method for this notebook's ID.
      * 
      * @method get_notebook_id
      * @return {String} This notebook's ID
      */
     Notebook.prototype.get_notebook_id = function () {
         return this.notebook_id;
     };
 
     /**
      * Getter method for this notebook's name.
      * 
      * @method get_notebook_name
      * @return {String} This notebook's name
      */
     Notebook.prototype.get_notebook_name = function () {
         return this.notebook_name;
     };
 
     /**
      * Setter method for this notebook's name.
      *
      * @method set_notebook_name
      * @param {String} name A new name for this notebook
      */
     Notebook.prototype.set_notebook_name = function (name) {
         this.notebook_name = name;
     };
 
     /**
      * Check that a notebook's name is valid.
      * 
      * @method test_notebook_name
      * @param {String} nbname A name for this notebook
      * @return {Boolean} True if the name is valid, false if invalid
      */
     Notebook.prototype.test_notebook_name = function (nbname) {
         nbname = nbname || '';
         if (this.notebook_name_blacklist_re.test(nbname) == false && nbname.length>0) {
             return true;
         } else {
             return false;
         };
     };
 
     /**
      * Load a notebook from JSON (.ipynb).
      * 
      * This currently handles one worksheet: others are deleted.
      * 
      * @method fromJSON
      * @param {Object} data JSON representation of a notebook
      */
     Notebook.prototype.fromJSON = function (data) {
         var ncells = this.ncells();
         var i;
         for (i=0; i<ncells; i++) {
             // Always delete cell 0 as they get renumbered as they are deleted.
             this.delete_cell(0);
         };
         // Save the metadata and name.
         this.metadata = data.metadata;
         this.notebook_name = data.metadata.name;
         // Only handle 1 worksheet for now.
         var worksheet = data.worksheets[0];
         if (worksheet !== undefined) {
             if (worksheet.metadata) {
                 this.worksheet_metadata = worksheet.metadata;
             }
             var new_cells = worksheet.cells;
             ncells = new_cells.length;
             var cell_data = null;
             var new_cell = null;
             for (i=0; i<ncells; i++) {
                 cell_data = new_cells[i];
                 // VERSIONHACK: plaintext -> raw
                 // handle never-released plaintext name for raw cells
                 if (cell_data.cell_type === 'plaintext'){
                     cell_data.cell_type = 'raw';
                 }
 
                 new_cell = this.insert_cell_below(cell_data.cell_type);
                 new_cell.fromJSON(cell_data);
             };
         };
         if (data.worksheets.length > 1) {
             IPython.dialog.modal({
                 title : "Multiple worksheets",
                 body : "This notebook has " + data.worksheets.length + " worksheets, " +
                     "but this version of IPython can only handle the first.  " +
                     "If you save this notebook, worksheets after the first will be lost.",
                 buttons : {
                     OK : {
                         class : "btn-danger"
                     }
                 }
             });
         }
     };
 
     /**
      * Dump this notebook into a JSON-friendly object.
      * 
      * @method toJSON
      * @return {Object} A JSON-friendly representation of this notebook.
      */
     Notebook.prototype.toJSON = function () {
         var cells = this.get_cells();
         var ncells = cells.length;
         var cell_array = new Array(ncells);
         for (var i=0; i<ncells; i++) {
             cell_array[i] = cells[i].toJSON();
         };
         var data = {
             // Only handle 1 worksheet for now.
             worksheets : [{
                 cells: cell_array,
                 metadata: this.worksheet_metadata
             }],
             metadata : this.metadata
         };
         return data;
     };
 
     /**
      * Start an autosave timer, for periodically saving the notebook.
      * 
      * @method set_autosave_interval
      * @param {Integer} interval the autosave interval in milliseconds
      */
     Notebook.prototype.set_autosave_interval = function (interval) {
         var that = this;
         // clear previous interval, so we don't get simultaneous timers
         if (this.autosave_timer) {
             clearInterval(this.autosave_timer);
         }
         
         this.autosave_interval = this.minimum_autosave_interval = interval;
         if (interval) {
             this.autosave_timer = setInterval(function() {
                 if (that.dirty) {
                     that.save_notebook();
                 }
             }, interval);
             $([IPython.events]).trigger("autosave_enabled.Notebook", interval);
         } else {
             this.autosave_timer = null;
             $([IPython.events]).trigger("autosave_disabled.Notebook");
         };
     };
     
     /**
      * Save this notebook on the server.
      * 
      * @method save_notebook
      */
     Notebook.prototype.save_notebook = function () {
         // We may want to move the name/id/nbformat logic inside toJSON?
         var data = this.toJSON();
         data.metadata.name = this.notebook_name;
         data.nbformat = this.nbformat;
         data.nbformat_minor = this.nbformat_minor;
         
         // time the ajax call for autosave tuning purposes.
         var start =  new Date().getTime();
 
         // We do the call with settings so we can set cache to false.
         var settings = {
             processData : false,
             cache : false,
             type : "PUT",
             data : JSON.stringify(data),
             headers : {'Content-Type': 'application/json'},
             success : $.proxy(this.save_notebook_success, this, start),
             error : $.proxy(this.save_notebook_error, this)
         };
         $([IPython.events]).trigger('notebook_saving.Notebook');
         var url = this.baseProjectUrl() + 'notebooks/' + this.notebook_id;
         $.ajax(url, settings);
     };
     
     /**
      * Success callback for saving a notebook.
      * 
      * @method save_notebook_success
      * @param {Integer} start the time when the save request started
      * @param {Object} data JSON representation of a notebook
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.save_notebook_success = function (start, data, status, xhr) {
         this.set_dirty(false);
         $([IPython.events]).trigger('notebook_saved.Notebook');
         this._update_autosave_interval(start);
         if (this._checkpoint_after_save) {
             this.create_checkpoint();
             this._checkpoint_after_save = false;
         };
     };
     
     /**
      * update the autosave interval based on how long the last save took
      * 
      * @method _update_autosave_interval
      * @param {Integer} timestamp when the save request started
      */
     Notebook.prototype._update_autosave_interval = function (start) {
         var duration = (new Date().getTime() - start);
         if (this.autosave_interval) {
             // new save interval: higher of 10x save duration or parameter (default 30 seconds)
             var interval = Math.max(10 * duration, this.minimum_autosave_interval);
             // round to 10 seconds, otherwise we will be setting a new interval too often
             interval = 10000 * Math.round(interval / 10000);
             // set new interval, if it's changed
             if (interval != this.autosave_interval) {
                 this.set_autosave_interval(interval);
             }
         }
     };
     
     /**
      * Failure callback for saving a notebook.
      * 
      * @method save_notebook_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.save_notebook_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('notebook_save_failed.Notebook');
     };
     
     /**
      * Request a notebook's data from the server.
      * 
      * @method load_notebook
      * @param {String} notebook_id A notebook to load
      */
     Notebook.prototype.load_notebook = function (notebook_id) {
         var that = this;
         this.notebook_id = notebook_id;
         // We do the call with settings so we can set cache to false.
         var settings = {
             processData : false,
             cache : false,
             type : "GET",
             dataType : "json",
             success : $.proxy(this.load_notebook_success,this),
             error : $.proxy(this.load_notebook_error,this),
         };
         $([IPython.events]).trigger('notebook_loading.Notebook');
         var url = this.baseProjectUrl() + 'notebooks/' + this.notebook_id;
         $.ajax(url, settings);
     };
 
     /**
      * Success callback for loading a notebook from the server.
      * 
      * Load notebook data from the JSON response.
      * 
      * @method load_notebook_success
      * @param {Object} data JSON representation of a notebook
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.load_notebook_success = function (data, status, xhr) {
         this.fromJSON(data);
         if (this.ncells() === 0) {
             this.insert_cell_below('code');
         };
         this.set_dirty(false);
         this.select(0);
         this.scroll_to_top();
         if (data.orig_nbformat !== undefined && data.nbformat !== data.orig_nbformat) {
             var msg = "This notebook has been converted from an older " +
             "notebook format (v"+data.orig_nbformat+") to the current notebook " +
             "format (v"+data.nbformat+"). The next time you save this notebook, the " +
             "newer notebook format will be used and older versions of IPython " +
             "may not be able to read it. To keep the older version, close the " +
             "notebook without saving it.";
             IPython.dialog.modal({
                 title : "Notebook converted",
                 body : msg,
                 buttons : {
                     OK : {
                         class : "btn-primary"
                     }
                 }
             });
         } else if (data.orig_nbformat_minor !== undefined && data.nbformat_minor !== data.orig_nbformat_minor) {
             var that = this;
             var orig_vs = 'v' + data.nbformat + '.' + data.orig_nbformat_minor;
             var this_vs = 'v' + data.nbformat + '.' + this.nbformat_minor;
             var msg = "This notebook is version " + orig_vs + ", but we only fully support up to " +
             this_vs + ".  You can still work with this notebook, but some features " +
             "introduced in later notebook versions may not be available."
 
             IPython.dialog.modal({
                 title : "Newer Notebook",
                 body : msg,
                 buttons : {
                     OK : {
                         class : "btn-danger"
                     }
                 }
             });
 
         }
         
         // Create the kernel after the notebook is completely loaded to prevent
         // code execution upon loading, which is a security risk.
         this.start_kernel();
         // load our checkpoint list
         IPython.notebook.list_checkpoints();
 
         $([IPython.events]).trigger('notebook_loaded.Notebook');
     };
 
     /**
      * Failure callback for loading a notebook from the server.
      * 
      * @method load_notebook_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} textStatus Description of response status
      * @param {String} errorThrow HTTP error message
      */
     Notebook.prototype.load_notebook_error = function (xhr, textStatus, errorThrow) {
         if (xhr.status === 400) {
             var msg = errorThrow;
         } else if (xhr.status === 500) {
             var msg = "An unknown error occurred while loading this notebook. " +
             "This version can load notebook formats " +
             "v" + this.nbformat + " or earlier.";
         }
         IPython.dialog.modal({
             title: "Error loading notebook",
             body : msg,
             buttons : {
                 "OK": {}
             }
         });
     }
 
     /*********************  checkpoint-related  *********************/
     
     /**
      * Save the notebook then immediately create a checkpoint.
      * 
      * @method save_checkpoint
      */
     Notebook.prototype.save_checkpoint = function () {
         this._checkpoint_after_save = true;
         this.save_notebook();
     };
     
     /**
      * Add a checkpoint for this notebook.
      * for use as a callback from checkpoint creation.
      * 
      * @method add_checkpoint
      */
     Notebook.prototype.add_checkpoint = function (checkpoint) {
         var found = false;
         for (var i = 0; i < this.checkpoints.length; i++) {
             var existing = this.checkpoints[i];
             if (existing.checkpoint_id == checkpoint.checkpoint_id) {
                 found = true;
                 this.checkpoints[i] = checkpoint;
                 break;
             }
         }
         if (!found) {
             this.checkpoints.push(checkpoint);
         }
         this.last_checkpoint = this.checkpoints[this.checkpoints.length - 1];
     };
     
     /**
      * List checkpoints for this notebook.
      * 
      * @method list_checkpoints
      */
     Notebook.prototype.list_checkpoints = function () {
         var url = this.baseProjectUrl() + 'notebooks/' + this.notebook_id + '/checkpoints';
         $.get(url).done(
             $.proxy(this.list_checkpoints_success, this)
         ).fail(
             $.proxy(this.list_checkpoints_error, this)
         );
     };
 
     /**
      * Success callback for listing checkpoints.
      * 
      * @method list_checkpoint_success
      * @param {Object} data JSON representation of a checkpoint
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.list_checkpoints_success = function (data, status, xhr) {
         var data = $.parseJSON(data);
         this.checkpoints = data;
         if (data.length) {
             this.last_checkpoint = data[data.length - 1];
         } else {
             this.last_checkpoint = null;
         }
         $([IPython.events]).trigger('checkpoints_listed.Notebook', [data]);
     };
 
     /**
      * Failure callback for listing a checkpoint.
      * 
      * @method list_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.list_checkpoints_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('list_checkpoints_failed.Notebook');
     };
     
     /**
      * Create a checkpoint of this notebook on the server from the most recent save.
      * 
      * @method create_checkpoint
      */
     Notebook.prototype.create_checkpoint = function () {
         var url = this.baseProjectUrl() + 'notebooks/' + this.notebook_id + '/checkpoints';
         $.post(url).done(
             $.proxy(this.create_checkpoint_success, this)
         ).fail(
             $.proxy(this.create_checkpoint_error, this)
         );
     };
 
     /**
      * Success callback for creating a checkpoint.
      * 
      * @method create_checkpoint_success
      * @param {Object} data JSON representation of a checkpoint
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.create_checkpoint_success = function (data, status, xhr) {
         var data = $.parseJSON(data);
         this.add_checkpoint(data);
         $([IPython.events]).trigger('checkpoint_created.Notebook', data);
     };
 
     /**
      * Failure callback for creating a checkpoint.
      * 
      * @method create_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.create_checkpoint_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('checkpoint_failed.Notebook');
     };
     
     Notebook.prototype.restore_checkpoint_dialog = function (checkpoint) {
         var that = this;
         var checkpoint = checkpoint || this.last_checkpoint;
         if ( ! checkpoint ) {
             console.log("restore dialog, but no checkpoint to restore to!");
             return;
         }
         var body = $('<div/>').append(
             $('<p/>').addClass("p-space").text(
                 "Are you sure you want to revert the notebook to " +
                 "the latest checkpoint?"
             ).append(
                 $("<strong/>").text(
                     " This cannot be undone."
                 )
             )
         ).append(
             $('<p/>').addClass("p-space").text("The checkpoint was last updated at:")
         ).append(
             $('<p/>').addClass("p-space").text(
                 Date(checkpoint.last_modified)
             ).css("text-align", "center")
         );
         
         IPython.dialog.modal({
             title : "Revert notebook to checkpoint",
             body : body,
             buttons : {
                 Revert : {
                     class : "btn-danger",
                     click : function () {
                         that.restore_checkpoint(checkpoint.checkpoint_id);
                     }
                 },
                 Cancel : {}
                 }
         });
     }
     
     /**
      * Restore the notebook to a checkpoint state.
      * 
      * @method restore_checkpoint
      * @param {String} checkpoint ID
      */
     Notebook.prototype.restore_checkpoint = function (checkpoint) {
         $([IPython.events]).trigger('checkpoint_restoring.Notebook', checkpoint);
         var url = this.baseProjectUrl() + 'notebooks/' + this.notebook_id + '/checkpoints/' + checkpoint;
         $.post(url).done(
             $.proxy(this.restore_checkpoint_success, this)
         ).fail(
             $.proxy(this.restore_checkpoint_error, this)
         );
     };
     
     /**
      * Success callback for restoring a notebook to a checkpoint.
      * 
      * @method restore_checkpoint_success
      * @param {Object} data (ignored, should be empty)
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.restore_checkpoint_success = function (data, status, xhr) {
         $([IPython.events]).trigger('checkpoint_restored.Notebook');
         this.load_notebook(this.notebook_id);
     };
 
     /**
      * Failure callback for restoring a notebook to a checkpoint.
      * 
      * @method restore_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.restore_checkpoint_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('checkpoint_restore_failed.Notebook');
     };
     
     /**
      * Delete a notebook checkpoint.
      * 
      * @method delete_checkpoint
      * @param {String} checkpoint ID
      */
     Notebook.prototype.delete_checkpoint = function (checkpoint) {
         $([IPython.events]).trigger('checkpoint_deleting.Notebook', checkpoint);
         var url = this.baseProjectUrl() + 'notebooks/' + this.notebook_id + '/checkpoints/' + checkpoint;
         $.ajax(url, {
             type: 'DELETE',
             success: $.proxy(this.delete_checkpoint_success, this),
             error: $.proxy(this.delete_notebook_error,this)
         });
     };
     
     /**
      * Success callback for deleting a notebook checkpoint
      * 
      * @method delete_checkpoint_success
      * @param {Object} data (ignored, should be empty)
      * @param {String} status Description of response status
      * @param {jqXHR} xhr jQuery Ajax object
      */
     Notebook.prototype.delete_checkpoint_success = function (data, status, xhr) {
         $([IPython.events]).trigger('checkpoint_deleted.Notebook', data);
         this.load_notebook(this.notebook_id);
     };
 
     /**
      * Failure callback for deleting a notebook checkpoint.
      * 
      * @method delete_checkpoint_error
      * @param {jqXHR} xhr jQuery Ajax object
      * @param {String} status Description of response status
      * @param {String} error_msg HTTP error message
      */
     Notebook.prototype.delete_checkpoint_error = function (xhr, status, error_msg) {
         $([IPython.events]).trigger('checkpoint_delete_failed.Notebook');
     };
 
 
     IPython.Notebook = Notebook;
 
 
     return IPython;
 
 }(IPython));
 

IPython/html/static/notebook/js/outputarea.js

@@ -1,682 +1,651 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008 The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // OutputArea
 //============================================================================
 
 /**
  * @module IPython
  * @namespace IPython
  * @submodule OutputArea
  */
 var IPython = (function (IPython) {
     "use strict";
 
     var utils = IPython.utils;
 
     /**
      * @class OutputArea
      *
      * @constructor
      */
 
     var OutputArea = function (selector, prompt_area) {
         this.selector = selector;
         this.wrapper = $(selector);
         this.outputs = [];
         this.collapsed = false;
         this.scrolled = false;
         this.clear_out_timeout = null;
         if (prompt_area === undefined) {
             this.prompt_area = true;
         } else {
             this.prompt_area = prompt_area;
         }
         this.create_elements();
         this.style();
         this.bind_events();
     };
     
     OutputArea.prototype.create_elements = function () {
         this.element = $("<div/>");
         this.collapse_button = $("<div/>");
         this.prompt_overlay = $("<div/>");
         this.wrapper.append(this.prompt_overlay);
         this.wrapper.append(this.element);
         this.wrapper.append(this.collapse_button);
     };
 
 
     OutputArea.prototype.style = function () {
         this.collapse_button.hide();
         this.prompt_overlay.hide();
         
         this.wrapper.addClass('output_wrapper');
         this.element.addClass('output vbox');
         
         this.collapse_button.addClass("btn output_collapsed");
         this.collapse_button.attr('title', 'click to expand output');
         this.collapse_button.html('. . .');
         
         this.prompt_overlay.addClass('out_prompt_overlay prompt');
         this.prompt_overlay.attr('title', 'click to expand output; double click to hide output');
         
         this.collapse();
     };
 
     /**
      * Should the OutputArea scroll?
      * Returns whether the height (in lines) exceeds a threshold.
      *
      * @private
      * @method _should_scroll
      * @param [lines=100]{Integer}
      * @return {Bool}
      *
      */
     OutputArea.prototype._should_scroll = function (lines) {
         if (lines <=0 ){ return }
         if (!lines) {
             lines = 100;
         }
         // line-height from http://stackoverflow.com/questions/1185151
         var fontSize = this.element.css('font-size');
         var lineHeight = Math.floor(parseInt(fontSize.replace('px','')) * 1.5);
         
         return (this.element.height() > lines * lineHeight);
     };
 
 
     OutputArea.prototype.bind_events = function () {
         var that = this;
         this.prompt_overlay.dblclick(function () { that.toggle_output(); });
         this.prompt_overlay.click(function () { that.toggle_scroll(); });
 
         this.element.resize(function () {
             // FIXME: Firefox on Linux misbehaves, so automatic scrolling is disabled
             if ( IPython.utils.browser[0] === "Firefox" ) {
                 return;
             }
             // maybe scroll output,
             // if it's grown large enough and hasn't already been scrolled.
             if ( !that.scrolled && that._should_scroll(OutputArea.auto_scroll_threshold)) {
                 that.scroll_area();
             }
         });
         this.collapse_button.click(function () {
             that.expand();
         });
     };
 
 
     OutputArea.prototype.collapse = function () {
         if (!this.collapsed) {
             this.element.hide();
             this.prompt_overlay.hide();
             if (this.element.html()){
                 this.collapse_button.show();
             }
             this.collapsed = true;
         }
     };
 
 
     OutputArea.prototype.expand = function () {
         if (this.collapsed) {
             this.collapse_button.hide();
             this.element.show();
             this.prompt_overlay.show();
             this.collapsed = false;
         }
     };
 
 
     OutputArea.prototype.toggle_output = function () {
         if (this.collapsed) {
             this.expand();
         } else {
             this.collapse();
         }
     };
 
 
     OutputArea.prototype.scroll_area = function () {
         this.element.addClass('output_scroll');
         this.prompt_overlay.attr('title', 'click to unscroll output; double click to hide');
         this.scrolled = true;
     };
 
 
     OutputArea.prototype.unscroll_area = function () {
         this.element.removeClass('output_scroll');
         this.prompt_overlay.attr('title', 'click to scroll output; double click to hide');
         this.scrolled = false;
     };
 
     /**
      * Threshold to trigger autoscroll when the OutputArea is resized,
      * typically when new outputs are added.
      *
      * Behavior is undefined if autoscroll is lower than minimum_scroll_threshold,
      * unless it is < 0, in which case autoscroll will never be triggered
      *
      * @property auto_scroll_threshold
      * @type Number
      * @default 100
      *
      **/
     OutputArea.auto_scroll_threshold = 100;
 
 
     /**
      * Lower limit (in lines) for OutputArea to be made scrollable. OutputAreas
      * shorter than this are never scrolled.
      *
      * @property minimum_scroll_threshold
      * @type Number
      * @default 20
      *
      **/
     OutputArea.minimum_scroll_threshold = 20;
 
 
     /**
      *
      * Scroll OutputArea if height supperior than a threshold (in lines).
      *
      * Threshold is a maximum number of lines. If unspecified, defaults to
      * OutputArea.minimum_scroll_threshold.
      *
      * Negative threshold will prevent the OutputArea from ever scrolling.
      *
      * @method scroll_if_long
      *
      * @param [lines=20]{Number} Default to 20 if not set,
      * behavior undefined for value of `0`.
      *
      **/
     OutputArea.prototype.scroll_if_long = function (lines) {
         var n = lines | OutputArea.minimum_scroll_threshold;
         if(n <= 0){
             return
         }
 
         if (this._should_scroll(n)) {
             // only allow scrolling long-enough output
             this.scroll_area();
         }
     };
 
 
     OutputArea.prototype.toggle_scroll = function () {
         if (this.scrolled) {
             this.unscroll_area();
         } else {
             // only allow scrolling long-enough output
             this.scroll_if_long();
         }
     };
 
 
     // typeset with MathJax if MathJax is available
     OutputArea.prototype.typeset = function () {
         if (window.MathJax){
             MathJax.Hub.Queue(["Typeset",MathJax.Hub]);
         }
     };
 
 
     OutputArea.prototype.handle_output = function (msg_type, content) {
         var json = {};
         json.output_type = msg_type;
         if (msg_type === "stream") {
             json.text = content.data;
             json.stream = content.name;
         } else if (msg_type === "display_data") {
             json = this.convert_mime_types(json, content.data);
             json.metadata = this.convert_mime_types({}, content.metadata);
         } else if (msg_type === "pyout") {
             json.prompt_number = content.execution_count;
             json = this.convert_mime_types(json, content.data);
             json.metadata = this.convert_mime_types({}, content.metadata);
         } else if (msg_type === "pyerr") {
             json.ename = content.ename;
             json.evalue = content.evalue;
             json.traceback = content.traceback;
         }
         // append with dynamic=true
         this.append_output(json, true);
     };
 
 
     OutputArea.prototype.convert_mime_types = function (json, data) {
         if (data === undefined) {
             return json;
         }
         if (data['text/plain'] !== undefined) {
             json.text = data['text/plain'];
         }
         if (data['text/html'] !== undefined) {
             json.html = data['text/html'];
         }
         if (data['image/svg+xml'] !== undefined) {
             json.svg = data['image/svg+xml'];
         }
         if (data['image/png'] !== undefined) {
             json.png = data['image/png'];
         }
         if (data['image/jpeg'] !== undefined) {
             json.jpeg = data['image/jpeg'];
         }
         if (data['text/latex'] !== undefined) {
             json.latex = data['text/latex'];
         }
         if (data['application/json'] !== undefined) {
             json.json = data['application/json'];
         }
         if (data['application/javascript'] !== undefined) {
             json.javascript = data['application/javascript'];
         }
         return json;
     };
 
 
     OutputArea.prototype.append_output = function (json, dynamic) {
         // If dynamic is true, javascript output will be eval'd.
         this.expand();
         if (json.output_type === 'pyout') {
             this.append_pyout(json, dynamic);
         } else if (json.output_type === 'pyerr') {
             this.append_pyerr(json);
         } else if (json.output_type === 'display_data') {
             this.append_display_data(json, dynamic);
         } else if (json.output_type === 'stream') {
             this.append_stream(json);
         }
         this.outputs.push(json);
         this.element.height('auto');
         var that = this;
         setTimeout(function(){that.element.trigger('resize');}, 100);
     };
 
 
     OutputArea.prototype.create_output_area = function () {
         var oa = $("<div/>").addClass("output_area");
         if (this.prompt_area) {
             oa.append($('<div/>').addClass('prompt'));
         }
         return oa;
     };
     
     OutputArea.prototype._append_javascript_error = function (err, container) {
         // display a message when a javascript error occurs in display output
         var msg = "Javascript error adding output!"
         console.log(msg, err);
         if ( container === undefined ) return;
         container.append(
             $('<div/>').html(msg + "<br/>" +
                 err.toString() +
                 '<br/>See your browser Javascript console for more details.'
             ).addClass('js-error')
         );
         container.show();
     };
     
     OutputArea.prototype._safe_append = function (toinsert) {
         // safely append an item to the document
         // this is an object created by user code,
         // and may have errors, which should not be raised
         // under any circumstances.
         try {
             this.element.append(toinsert);
         } catch(err) {
             console.log(err);
             this._append_javascript_error(err, this.element);
         }
     };
 
 
     OutputArea.prototype.append_pyout = function (json, dynamic) {
         var n = json.prompt_number || ' ';
         var toinsert = this.create_output_area();
         if (this.prompt_area) {
             toinsert.find('div.prompt').addClass('output_prompt').html('Out[' + n + ']:');
         }
         this.append_mime_type(json, toinsert, dynamic);
         this._safe_append(toinsert);
         // If we just output latex, typeset it.
         if ((json.latex !== undefined) || (json.html !== undefined)) {
             this.typeset();
         }
     };
 
 
     OutputArea.prototype.append_pyerr = function (json) {
         var tb = json.traceback;
         if (tb !== undefined && tb.length > 0) {
             var s = '';
             var len = tb.length;
             for (var i=0; i<len; i++) {
                 s = s + tb[i] + '\n';
             }
             s = s + '\n';
             var toinsert = this.create_output_area();
             this.append_text(s, {}, toinsert);
             this._safe_append(toinsert);
         }
     };
 
 
     OutputArea.prototype.append_stream = function (json) {
         // temporary fix: if stream undefined (json file written prior to this patch),
         // default to most likely stdout:
         if (json.stream == undefined){
             json.stream = 'stdout';
         }
         var text = json.text;
         var subclass = "output_"+json.stream;
         if (this.outputs.length > 0){
             // have at least one output to consider
             var last = this.outputs[this.outputs.length-1];
             if (last.output_type == 'stream' && json.stream == last.stream){
                 // latest output was in the same stream,
                 // so append directly into its pre tag
                 // escape ANSI & HTML specials:
                 var pre = this.element.find('div.'+subclass).last().find('pre');
                 var html = utils.fixCarriageReturn(
                     pre.html() + utils.fixConsole(text));
                 pre.html(html);
                 return;
             }
         }
 
         if (!text.replace("\r", "")) {
             // text is nothing (empty string, \r, etc.)
             // so don't append any elements, which might add undesirable space
             return;
         }
 
         // If we got here, attach a new div
         var toinsert = this.create_output_area();
         this.append_text(text, {}, toinsert, "output_stream "+subclass);
         this._safe_append(toinsert);
     };
 
 
     OutputArea.prototype.append_display_data = function (json, dynamic) {
         var toinsert = this.create_output_area();
         this.append_mime_type(json, toinsert, dynamic);
         this._safe_append(toinsert);
         // If we just output latex, typeset it.
         if ( (json.latex !== undefined) || (json.html !== undefined) ) {
             this.typeset();
         }
     };
 
     OutputArea.display_order = ['javascript','html','latex','svg','png','jpeg','text'];
 
     OutputArea.prototype.append_mime_type = function (json, element, dynamic) {
         for(var type_i in OutputArea.display_order){
             var type = OutputArea.display_order[type_i];
             if(json[type] != undefined ){
                 var md = {};
                 if (json.metadata && json.metadata[type]) {
                     md = json.metadata[type];
                 };
                 if(type == 'javascript'){
                     if (dynamic) {
                         this.append_javascript(json.javascript, md, element, dynamic);
                     }
                 } else {
                     this['append_'+type](json[type], md, element);
                 }
                 return;
             }
         }
     };
 
 
     OutputArea.prototype.append_html = function (html, md, element) {
         var toinsert = $("<div/>").addClass("output_subarea output_html rendered_html");
         toinsert.append(html);
         element.append(toinsert);
     };
 
 
     OutputArea.prototype.append_javascript = function (js, md, container) {
         // We just eval the JS code, element appears in the local scope.
         var element = $("<div/>").addClass("output_subarea");
         container.append(element);
         // Div for js shouldn't be drawn, as it will add empty height to the area.
         container.hide();
         // If the Javascript appends content to `element` that should be drawn, then
         // it must also call `container.show()`.
         try {
             eval(js);
         } catch(err) {
             this._append_javascript_error(err, container);
         }
     };
 
 
     OutputArea.prototype.append_text = function (data, md, element, extra_class) {
         var toinsert = $("<div/>").addClass("output_subarea output_text");
         // escape ANSI & HTML specials in plaintext:
         data = utils.fixConsole(data);
         data = utils.fixCarriageReturn(data);
         data = utils.autoLinkUrls(data);
         if (extra_class){
             toinsert.addClass(extra_class);
         }
         toinsert.append($("<pre/>").html(data));
         element.append(toinsert);
     };
 
 
     OutputArea.prototype.append_svg = function (svg, md, element) {
         var toinsert = $("<div/>").addClass("output_subarea output_svg");
         toinsert.append(svg);
         element.append(toinsert);
     };
 
 
     OutputArea.prototype._dblclick_to_reset_size = function (img) {
         // schedule wrapping image in resizable after a delay,
         // so we don't end up calling resize on a zero-size object
         var that = this;
         setTimeout(function () {
             var h0 = img.height();
             var w0 = img.width();
             if (!(h0 && w0)) {
                 // zero size, schedule another timeout
                 that._dblclick_to_reset_size(img);
                 return;
             }
             img.resizable({
                 aspectRatio: true,
                 autoHide: true
             });
             img.dblclick(function () {
                 // resize wrapper & image together for some reason:
                 img.parent().height(h0);
                 img.height(h0);
                 img.parent().width(w0);
                 img.width(w0);
             });
         }, 250);
     };
 
 
     OutputArea.prototype.append_png = function (png, md, element) {
         var toinsert = $("<div/>").addClass("output_subarea output_png");
         var img = $("<img/>").attr('src','data:image/png;base64,'+png);
         if (md['height']) {
             img.attr('height', md['height']);
         }
         if (md['width']) {
             img.attr('width', md['width']);
         }
         this._dblclick_to_reset_size(img);
         toinsert.append(img);
         element.append(toinsert);
     };
 
 
     OutputArea.prototype.append_jpeg = function (jpeg, md, element) {
         var toinsert = $("<div/>").addClass("output_subarea output_jpeg");
         var img = $("<img/>").attr('src','data:image/jpeg;base64,'+jpeg);
         if (md['height']) {
             img.attr('height', md['height']);
         }
         if (md['width']) {
             img.attr('width', md['width']);
         }
         this._dblclick_to_reset_size(img);
         toinsert.append(img);
         element.append(toinsert);
     };
 
 
     OutputArea.prototype.append_latex = function (latex, md, element) {
         // This method cannot do the typesetting because the latex first has to
         // be on the page.
         var toinsert = $("<div/>").addClass("output_subarea output_latex");
         toinsert.append(latex);
         element.append(toinsert);
     };
 
     OutputArea.prototype.append_raw_input = function (content) {
         var that = this;
         this.expand();
         var area = this.create_output_area();
         
         // disable any other raw_inputs, if they are left around
         $("div.output_subarea.raw_input").remove();
         
         area.append(
             $("<div/>")
             .addClass("box-flex1 output_subarea raw_input")
             .append(
                 $("<span/>")
                 .addClass("input_prompt")
                 .text(content.prompt)
             )
             .append(
                 $("<input/>")
                 .addClass("raw_input")
                 .attr('type', 'text')
                 .attr("size", 47)
                 .keydown(function (event, ui) {
                     // make sure we submit on enter,
                     // and don't re-execute the *cell* on shift-enter
                     if (event.which === utils.keycodes.ENTER) {
                         that._submit_raw_input();
                         return false;
                     }
                 })
             )
         );
         this.element.append(area);
         // weirdly need double-focus now,
         // otherwise only the cell will be focused
         area.find("input.raw_input").focus().focus();
     }
     OutputArea.prototype._submit_raw_input = function (evt) {
         var container = this.element.find("div.raw_input");
         var theprompt = container.find("span.input_prompt");
         var theinput = container.find("input.raw_input");
         var value = theinput.val();
         var content = {
             output_type : 'stream',
             name : 'stdout',
             text : theprompt.text() + value + '\n'
         }
         // remove form container
         container.parent().remove();
         // replace with plaintext version in stdout
         this.append_output(content, false);
         $([IPython.events]).trigger('send_input_reply.Kernel', value);
     }
 
 
     OutputArea.prototype.handle_clear_output = function (content) {
-        this.clear_output(content.stdout, content.stderr, content.other);
+        this.clear_output();
     };
 
 
-    OutputArea.prototype.clear_output = function (stdout, stderr, other) {
-        var output_div = this.element;
-
+    OutputArea.prototype.clear_output = function() {
+        
         // Fix the output div's height
-        var height = output_div.height();
-        output_div.height(height);
+        var height = this.element.height();
+        this.element.height(height);
 
-        if (stdout && stderr && other){
-            // clear all, no need for logic
-            output_div.html("");
-            this.outputs = [];
-            this.unscroll_area();
-            return;
-        }
-        // remove html output
-        // each output_subarea that has an identifying class is in an output_area
-        // which is the element to be removed.
-        if (stdout) {
-            output_div.find("div.output_stdout").parent().remove();
-        }
-        if (stderr) {
-            output_div.find("div.output_stderr").parent().remove();
-        }
-        if (other) {
-            output_div.find("div.output_subarea").not("div.output_stderr").not("div.output_stdout").parent().remove();
-        }
+        // clear all, no need for logic
+        this.element.html("");
+        this.outputs = [];
         this.unscroll_area();
-        
-        // remove cleared outputs from JSON list:
-        for (var i = this.outputs.length - 1; i >= 0; i--) {
-            var out = this.outputs[i];
-            var output_type = out.output_type;
-            if (output_type == "display_data" && other) {
-                this.outputs.splice(i,1);
-            } else if (output_type == "stream") {
-                if (stdout && out.stream == "stdout") {
-                    this.outputs.splice(i,1);
-                } else if (stderr && out.stream == "stderr") {
-                    this.outputs.splice(i,1);
-                }
-            }
-        }
+        return;
     };
 
 
     // JSON serialization
 
     OutputArea.prototype.fromJSON = function (outputs) {
         var len = outputs.length;
         for (var i=0; i<len; i++) {
             // append with dynamic=false.
             this.append_output(outputs[i], false);
         }
     };
 
 
     OutputArea.prototype.toJSON = function () {
         var outputs = [];
         var len = this.outputs.length;
         for (var i=0; i<len; i++) {
             outputs[i] = this.outputs[i];
         }
         return outputs;
     };
 
 
     IPython.OutputArea = OutputArea;
 
     return IPython;
 
 }(IPython));

IPython/kernel/zmq/zmqshell.py

@@ -1,602 +1,599 b''
 """A ZMQ-based subclass of InteractiveShell.
 
 This code is meant to ease the refactoring of the base InteractiveShell into
 something with a cleaner architecture for 2-process use, without actually
 breaking InteractiveShell itself.  So we're doing something a bit ugly, where
 we subclass and override what we want to fix.  Once this is working well, we
 can go back to the base class and refactor the code for a cleaner inheritance
 implementation that doesn't rely on so much monkeypatching.
 
 But this lets us maintain a fully working IPython as we develop the new
 machinery.  This should thus be thought of as scaffolding.
 """
 #-----------------------------------------------------------------------------
 # Imports
 #-----------------------------------------------------------------------------
 from __future__ import print_function
 
 # Stdlib
 import os
 import sys
 import time
 
 # System library imports
 from zmq.eventloop import ioloop
 
 # Our own
 from IPython.core.interactiveshell import (
     InteractiveShell, InteractiveShellABC
 )
 from IPython.core import page
 from IPython.core.autocall import ZMQExitAutocall
 from IPython.core.displaypub import DisplayPublisher
 from IPython.core.error import UsageError
 from IPython.core.magics import MacroToEdit, CodeMagics
 from IPython.core.magic import magics_class, line_magic, Magics
 from IPython.core.payloadpage import install_payload_page
 from IPython.display import display, Javascript
 from IPython.kernel.inprocess.socket import SocketABC
 from IPython.kernel import (
     get_connection_file, get_connection_info, connect_qtconsole
 )
 from IPython.testing.skipdoctest import skip_doctest
 from IPython.utils import openpy
 from IPython.utils.jsonutil import json_clean, encode_images
 from IPython.utils.process import arg_split
 from IPython.utils import py3compat
 from IPython.utils.traitlets import Instance, Type, Dict, CBool, CBytes
 from IPython.utils.warn import error
 from IPython.kernel.zmq.displayhook import ZMQShellDisplayHook
 from IPython.kernel.zmq.datapub import ZMQDataPublisher
 from IPython.kernel.zmq.session import extract_header
 from session import Session
 
 #-----------------------------------------------------------------------------
 # Functions and classes
 #-----------------------------------------------------------------------------
 
 class ZMQDisplayPublisher(DisplayPublisher):
     """A display publisher that publishes data using a ZeroMQ PUB socket."""
 
     session = Instance(Session)
     pub_socket = Instance(SocketABC)
     parent_header = Dict({})
     topic = CBytes(b'display_data')
 
     def set_parent(self, parent):
         """Set the parent for outbound messages."""
         self.parent_header = extract_header(parent)
     
     def _flush_streams(self):
         """flush IO Streams prior to display"""
         sys.stdout.flush()
         sys.stderr.flush()
 
     def publish(self, source, data, metadata=None):
         self._flush_streams()
         if metadata is None:
             metadata = {}
         self._validate_data(source, data, metadata)
         content = {}
         content['source'] = source
         content['data'] = encode_images(data)
         content['metadata'] = metadata
         self.session.send(
             self.pub_socket, u'display_data', json_clean(content),
             parent=self.parent_header, ident=self.topic,
         )
 
-    def clear_output(self, stdout=True, stderr=True, other=True):
-        content = dict(stdout=stdout, stderr=stderr, other=other)
-        
-        if stdout:
-            print('\r', file=sys.stdout, end='')
-        if stderr:
-            print('\r', file=sys.stderr, end='')
-        
+    def clear_output(self):
+        content = {}
+
+        print('\r', file=sys.stdout, end='')
+        print('\r', file=sys.stderr, end='')
         self._flush_streams()
         
         self.session.send(
             self.pub_socket, u'clear_output', content,
             parent=self.parent_header, ident=self.topic,
         )
 
 @magics_class
 class KernelMagics(Magics):
     #------------------------------------------------------------------------
     # Magic overrides
     #------------------------------------------------------------------------
     # Once the base class stops inheriting from magic, this code needs to be
     # moved into a separate machinery as well.  For now, at least isolate here
     # the magics which this class needs to implement differently from the base
     # class, or that are unique to it.
 
     @line_magic
     def doctest_mode(self, parameter_s=''):
         """Toggle doctest mode on and off.
 
         This mode is intended to make IPython behave as much as possible like a
         plain Python shell, from the perspective of how its prompts, exceptions
         and output look.  This makes it easy to copy and paste parts of a
         session into doctests.  It does so by:
 
         - Changing the prompts to the classic ``>>>`` ones.
         - Changing the exception reporting mode to 'Plain'.
         - Disabling pretty-printing of output.
 
         Note that IPython also supports the pasting of code snippets that have
         leading '>>>' and '...' prompts in them.  This means that you can paste
         doctests from files or docstrings (even if they have leading
         whitespace), and the code will execute correctly.  You can then use
         '%history -t' to see the translated history; this will give you the
         input after removal of all the leading prompts and whitespace, which
         can be pasted back into an editor.
 
         With these features, you can switch into this mode easily whenever you
         need to do testing and changes to doctests, without having to leave
         your existing IPython session.
         """
 
         from IPython.utils.ipstruct import Struct
 
         # Shorthands
         shell = self.shell
         disp_formatter = self.shell.display_formatter
         ptformatter = disp_formatter.formatters['text/plain']
         # dstore is a data store kept in the instance metadata bag to track any
         # changes we make, so we can undo them later.
         dstore = shell.meta.setdefault('doctest_mode', Struct())
         save_dstore = dstore.setdefault
 
         # save a few values we'll need to recover later
         mode = save_dstore('mode', False)
         save_dstore('rc_pprint', ptformatter.pprint)
         save_dstore('rc_active_types',disp_formatter.active_types)
         save_dstore('xmode', shell.InteractiveTB.mode)
 
         if mode == False:
             # turn on
             ptformatter.pprint = False
             disp_formatter.active_types = ['text/plain']
             shell.magic('xmode Plain')
         else:
             # turn off
             ptformatter.pprint = dstore.rc_pprint
             disp_formatter.active_types = dstore.rc_active_types
             shell.magic("xmode " + dstore.xmode)
 
         # Store new mode and inform on console
         dstore.mode = bool(1-int(mode))
         mode_label = ['OFF','ON'][dstore.mode]
         print('Doctest mode is:', mode_label)
 
         # Send the payload back so that clients can modify their prompt display
         payload = dict(
             source='doctest_mode',
             mode=dstore.mode)
         shell.payload_manager.write_payload(payload)
         
     
     _find_edit_target = CodeMagics._find_edit_target
 
     @skip_doctest
     @line_magic
     def edit(self, parameter_s='', last_call=['','']):
         """Bring up an editor and execute the resulting code.
 
         Usage:
           %edit [options] [args]
 
         %edit runs an external text editor. You will need to set the command for
         this editor via the ``TerminalInteractiveShell.editor`` option in your
         configuration file before it will work.
 
         This command allows you to conveniently edit multi-line code right in
         your IPython session.
 
         If called without arguments, %edit opens up an empty editor with a
         temporary file and will execute the contents of this file when you
         close it (don't forget to save it!).
 
 
         Options:
 
         -n <number>: open the editor at a specified line number.  By default,
         the IPython editor hook uses the unix syntax 'editor +N filename', but
         you can configure this by providing your own modified hook if your
         favorite editor supports line-number specifications with a different
         syntax.
 
         -p: this will call the editor with the same data as the previous time
         it was used, regardless of how long ago (in your current session) it
         was.
 
         -r: use 'raw' input.  This option only applies to input taken from the
         user's history.  By default, the 'processed' history is used, so that
         magics are loaded in their transformed version to valid Python.  If
         this option is given, the raw input as typed as the command line is
         used instead.  When you exit the editor, it will be executed by
         IPython's own processor.
 
         -x: do not execute the edited code immediately upon exit. This is
         mainly useful if you are editing programs which need to be called with
         command line arguments, which you can then do using %run.
 
 
         Arguments:
 
         If arguments are given, the following possibilites exist:
 
         - The arguments are numbers or pairs of colon-separated numbers (like
         1 4:8 9). These are interpreted as lines of previous input to be
         loaded into the editor. The syntax is the same of the %macro command.
 
         - If the argument doesn't start with a number, it is evaluated as a
         variable and its contents loaded into the editor. You can thus edit
         any string which contains python code (including the result of
         previous edits).
 
         - If the argument is the name of an object (other than a string),
         IPython will try to locate the file where it was defined and open the
         editor at the point where it is defined. You can use `%edit function`
         to load an editor exactly at the point where 'function' is defined,
         edit it and have the file be executed automatically.
 
         If the object is a macro (see %macro for details), this opens up your
         specified editor with a temporary file containing the macro's data.
         Upon exit, the macro is reloaded with the contents of the file.
 
         Note: opening at an exact line is only supported under Unix, and some
         editors (like kedit and gedit up to Gnome 2.8) do not understand the
         '+NUMBER' parameter necessary for this feature. Good editors like
         (X)Emacs, vi, jed, pico and joe all do.
 
         - If the argument is not found as a variable, IPython will look for a
         file with that name (adding .py if necessary) and load it into the
         editor. It will execute its contents with execfile() when you exit,
         loading any code in the file into your interactive namespace.
 
         After executing your code, %edit will return as output the code you
         typed in the editor (except when it was an existing file). This way
         you can reload the code in further invocations of %edit as a variable,
         via _<NUMBER> or Out[<NUMBER>], where <NUMBER> is the prompt number of
         the output.
 
         Note that %edit is also available through the alias %ed.
 
         This is an example of creating a simple function inside the editor and
         then modifying it. First, start up the editor:
 
         In [1]: ed
         Editing... done. Executing edited code...
         Out[1]: 'def foo():n    print "foo() was defined in an editing session"n'
 
         We can then call the function foo():
 
         In [2]: foo()
         foo() was defined in an editing session
 
         Now we edit foo.  IPython automatically loads the editor with the
         (temporary) file where foo() was previously defined:
 
         In [3]: ed foo
         Editing... done. Executing edited code...
 
         And if we call foo() again we get the modified version:
 
         In [4]: foo()
         foo() has now been changed!
 
         Here is an example of how to edit a code snippet successive
         times. First we call the editor:
 
         In [5]: ed
         Editing... done. Executing edited code...
         hello
         Out[5]: "print 'hello'n"
 
         Now we call it again with the previous output (stored in _):
 
         In [6]: ed _
         Editing... done. Executing edited code...
         hello world
         Out[6]: "print 'hello world'n"
 
         Now we call it with the output #8 (stored in _8, also as Out[8]):
 
         In [7]: ed _8
         Editing... done. Executing edited code...
         hello again
         Out[7]: "print 'hello again'n"
         """
 
         opts,args = self.parse_options(parameter_s,'prn:')
 
         try:
             filename, lineno, _ = CodeMagics._find_edit_target(self.shell, args, opts, last_call)
         except MacroToEdit as e:
             # TODO: Implement macro editing over 2 processes.
             print("Macro editing not yet implemented in 2-process model.")
             return
 
         # Make sure we send to the client an absolute path, in case the working
         # directory of client and kernel don't match
         filename = os.path.abspath(filename)
 
         payload = {
             'source' : 'edit_magic',
             'filename' : filename,
             'line_number' : lineno
         }
         self.shell.payload_manager.write_payload(payload)
 
     # A few magics that are adapted to the specifics of using pexpect and a
     # remote terminal
 
     @line_magic
     def clear(self, arg_s):
         """Clear the terminal."""
         if os.name == 'posix':
             self.shell.system("clear")
         else:
             self.shell.system("cls")
 
     if os.name == 'nt':
         # This is the usual name in windows
         cls = line_magic('cls')(clear)
 
     # Terminal pagers won't work over pexpect, but we do have our own pager
 
     @line_magic
     def less(self, arg_s):
         """Show a file through the pager.
 
         Files ending in .py are syntax-highlighted."""
         if not arg_s:
             raise UsageError('Missing filename.')
 
         cont = open(arg_s).read()
         if arg_s.endswith('.py'):
             cont = self.shell.pycolorize(openpy.read_py_file(arg_s, skip_encoding_cookie=False))
         else:
             cont = open(arg_s).read()
         page.page(cont)
 
     more = line_magic('more')(less)
 
     # Man calls a pager, so we also need to redefine it
     if os.name == 'posix':
         @line_magic
         def man(self, arg_s):
             """Find the man page for the given command and display in pager."""
             page.page(self.shell.getoutput('man %s | col -b' % arg_s,
                                            split=False))
 
     @line_magic
     def connect_info(self, arg_s):
         """Print information for connecting other clients to this kernel
         
         It will print the contents of this session's connection file, as well as
         shortcuts for local clients.
         
         In the simplest case, when called from the most recently launched kernel,
         secondary clients can be connected, simply with:
         
         $> ipython <app> --existing
         
         """
         
         from IPython.core.application import BaseIPythonApplication as BaseIPApp
         
         if BaseIPApp.initialized():
             app = BaseIPApp.instance()
             security_dir = app.profile_dir.security_dir
             profile = app.profile
         else:
             profile = 'default'
             security_dir = ''
         
         try:
             connection_file = get_connection_file()
             info = get_connection_info(unpack=False)
         except Exception as e:
             error("Could not get connection info: %r" % e)
             return
         
         # add profile flag for non-default profile
         profile_flag = "--profile %s" % profile if profile != 'default' else ""
         
         # if it's in the security dir, truncate to basename
         if security_dir == os.path.dirname(connection_file):
             connection_file = os.path.basename(connection_file)
         
         
         print (info + '\n')
         print ("Paste the above JSON into a file, and connect with:\n"
             "    $> ipython <app> --existing <file>\n"
             "or, if you are local, you can connect with just:\n"
             "    $> ipython <app> --existing {0} {1}\n"
             "or even just:\n"
             "    $> ipython <app> --existing {1}\n"
             "if this is the most recent IPython session you have started.".format(
             connection_file, profile_flag
             )
         )
 
     @line_magic
     def qtconsole(self, arg_s):
         """Open a qtconsole connected to this kernel.
         
         Useful for connecting a qtconsole to running notebooks, for better
         debugging.
         """
         
         # %qtconsole should imply bind_kernel for engines:
         try:
             from IPython.parallel import bind_kernel
         except ImportError:
             # technically possible, because parallel has higher pyzmq min-version
             pass
         else:
             bind_kernel()
         
         try:
             p = connect_qtconsole(argv=arg_split(arg_s, os.name=='posix'))
         except Exception as e:
             error("Could not start qtconsole: %r" % e)
             return
     
     @line_magic
     def autosave(self, arg_s):
         """Set the autosave interval in the notebook (in seconds).
         
         The default value is 120, or two minutes.
         ``%autosave 0`` will disable autosave.
         
         This magic only has an effect when called from the notebook interface.
         It has no effect when called in a startup file.
         """
         
         try:
             interval = int(arg_s)
         except ValueError:
             raise UsageError("%%autosave requires an integer, got %r" % arg_s)
         
         # javascript wants milliseconds
         milliseconds = 1000 * interval
         display(Javascript("IPython.notebook.set_autosave_interval(%i)" % milliseconds),
             include=['application/javascript']
         )
         if interval:
             print("Autosaving every %i seconds" % interval)
         else:
             print("Autosave disabled")
 
 
 class ZMQInteractiveShell(InteractiveShell):
     """A subclass of InteractiveShell for ZMQ."""
 
     displayhook_class = Type(ZMQShellDisplayHook)
     display_pub_class = Type(ZMQDisplayPublisher)
     data_pub_class = Type(ZMQDataPublisher)
 
     # Override the traitlet in the parent class, because there's no point using
     # readline for the kernel. Can be removed when the readline code is moved
     # to the terminal frontend.
     colors_force = CBool(True)
     readline_use = CBool(False)
     # autoindent has no meaning in a zmqshell, and attempting to enable it
     # will print a warning in the absence of readline.
     autoindent = CBool(False)
 
     exiter = Instance(ZMQExitAutocall)
     def _exiter_default(self):
         return ZMQExitAutocall(self)
     
     def _exit_now_changed(self, name, old, new):
         """stop eventloop when exit_now fires"""
         if new:
             loop = ioloop.IOLoop.instance()
             loop.add_timeout(time.time()+0.1, loop.stop)
 
     keepkernel_on_exit = None
 
     # Over ZeroMQ, GUI control isn't done with PyOS_InputHook as there is no
     # interactive input being read; we provide event loop support in ipkernel
     @staticmethod
     def enable_gui(gui):
         from .eventloops import enable_gui as real_enable_gui
         try:
             real_enable_gui(gui)
         except ValueError as e:
             raise UsageError("%s" % e)
 
     def init_environment(self):
         """Configure the user's environment.
 
         """
         env = os.environ
         # These two ensure 'ls' produces nice coloring on BSD-derived systems
         env['TERM'] = 'xterm-color'
         env['CLICOLOR'] = '1'
         # Since normal pagers don't work at all (over pexpect we don't have
         # single-key control of the subprocess), try to disable paging in
         # subprocesses as much as possible.
         env['PAGER'] = 'cat'
         env['GIT_PAGER'] = 'cat'
         
         # And install the payload version of page.
         install_payload_page()
 
     def auto_rewrite_input(self, cmd):
         """Called to show the auto-rewritten input for autocall and friends.
 
         FIXME: this payload is currently not correctly processed by the
         frontend.
         """
         new = self.prompt_manager.render('rewrite') + cmd
         payload = dict(
             source='auto_rewrite_input',
             transformed_input=new,
             )
         self.payload_manager.write_payload(payload)
 
     def ask_exit(self):
         """Engage the exit actions."""
         self.exit_now = True
         payload = dict(
             source='ask_exit',
             exit=True,
             keepkernel=self.keepkernel_on_exit,
             )
         self.payload_manager.write_payload(payload)
 
     def _showtraceback(self, etype, evalue, stb):
 
         exc_content = {
             u'traceback' : stb,
             u'ename' : unicode(etype.__name__),
             u'evalue' : py3compat.safe_unicode(evalue),
         }
 
         dh = self.displayhook
         # Send exception info over pub socket for other clients than the caller
         # to pick up
         topic = None
         if dh.topic:
             topic = dh.topic.replace(b'pyout', b'pyerr')
         
         exc_msg = dh.session.send(dh.pub_socket, u'pyerr', json_clean(exc_content), dh.parent_header, ident=topic)
 
         # FIXME - Hack: store exception info in shell object.  Right now, the
         # caller is reading this info after the fact, we need to fix this logic
         # to remove this hack.  Even uglier, we need to store the error status
         # here, because in the main loop, the logic that sets it is being
         # skipped because runlines swallows the exceptions.
         exc_content[u'status'] = u'error'
         self._reply_content = exc_content
         # /FIXME
 
         return exc_content
 
     def set_next_input(self, text):
         """Send the specified text to the frontend to be presented at the next
         input cell."""
         payload = dict(
             source='set_next_input',
             text=text
         )
         self.payload_manager.write_payload(payload)
     
     #-------------------------------------------------------------------------
     # Things related to magics
     #-------------------------------------------------------------------------
 
     def init_magics(self):
         super(ZMQInteractiveShell, self).init_magics()
         self.register_magics(KernelMagics)
         self.magics_manager.register_alias('ed', 'edit')
 
 
 
 InteractiveShellABC.register(ZMQInteractiveShell)

examples/widgets/directview/directview.js

@@ -1,172 +1,172 b''
 //----------------------------------------------------------------------------
 //  Copyright (C) 2008-2012  The IPython Development Team
 //
 //  Distributed under the terms of the BSD License.  The full license is in
 //  the file COPYING, distributed as part of this software.
 //----------------------------------------------------------------------------
 
 //============================================================================
 // EngineInteract
 //============================================================================
 
 var key   = IPython.utils.keycodes;
 
 
 var DirectViewWidget = function (selector, kernel, targets) {
     // The kernel doesn't have to be set at creation time, in that case
     // it will be null and set_kernel has to be called later.
     this.selector = selector;
     this.element = $(selector);
     this.kernel = kernel || null;
     this.code_mirror = null;
     this.targets = targets;
     this.create_element();
 };
 
 
 DirectViewWidget.prototype.create_element = function () {
     this.element.addClass('cell border-box-sizing code_cell vbox');
     this.element.attr('tabindex','2');
     this.element.css('padding-right',0);
 
     var control = $('<div/>').addClass('dv_control').height('30px');
     var control_label = $('<span/>').html('Select engine(s) to run code on interactively: ');
     control_label.css('line-height','30px');
     var select = $('<select/>').addClass('dv_select ui-widget ui-widget-content');
     select.css('font-size','85%%').css('margin-bottom','5px');
     var n = this.targets.length;
     select.append($('<option/>').html('all').attr('value','all'));
     for (var i=0; i<n; i++) {
         select.append($('<option/>').html(this.targets[i]).attr('value',this.targets[i]))
     }
     control.append(control_label).append(select);
 
     var input = $('<div></div>').addClass('input hbox');
     var input_area = $('<div/>').addClass('input_area box-flex1');
     this.code_mirror = CodeMirror(input_area.get(0), {
         indentUnit : 4,
         mode: 'python',
         theme: 'ipython',
         onKeyEvent: $.proxy(this.handle_codemirror_keyevent,this)
     });
     input.append(input_area);
     var output = $('<div></div>');
 
 
     this.element.append(control).append(input).append(output);
 	this.output_area = new IPython.OutputArea(output, false);
 
 };
 
 
 DirectViewWidget.prototype.handle_codemirror_keyevent = function (editor, event) {
     // This method gets called in CodeMirror's onKeyDown/onKeyPress
     // handlers and is used to provide custom key handling. Its return
     // value is used to determine if CodeMirror should ignore the event:
     // true = ignore, false = don't ignore.
   
     var that = this;
     var cur = editor.getCursor();
 
     if (event.keyCode === key.ENTER && event.shiftKey && event.type === 'keydown') {
         // Always ignore shift-enter in CodeMirror as we handle it.
         event.stop();
         that.execute();
         return true;
     } else if (event.keyCode === key.UP && event.type === 'keydown') {
         event.stop();
         return false;
     } else if (event.keyCode === key.DOWN && event.type === 'keydown') {
         event.stop();
         return false;
     } else if (event.keyCode === key.BACKSPACE && event.type == 'keydown') {
         // If backspace and the line ends with 4 spaces, remove them.
         var line = editor.getLine(cur.line);
         var ending = line.slice(-4);
         if (ending === '    ') {
             editor.replaceRange('',
                 {line: cur.line, ch: cur.ch-4},
                 {line: cur.line, ch: cur.ch}
             );
             event.stop();
             return true;
         } else {
             return false;
         };
     };
 
     return false;
 };
 
 
 // Kernel related calls.
 
 
 DirectViewWidget.prototype.set_kernel = function (kernel) {
     this.kernel = kernel;
 }
 
 
 DirectViewWidget.prototype.execute = function () {
-    this.output_area.clear_output(true, true, true);
+    this.output_area.clear_output();
     this.element.addClass("running");
     var callbacks = {
         'execute_reply': $.proxy(this._handle_execute_reply, this),
         'output': $.proxy(this.output_area.handle_output, this.output_area),
         'clear_output': $.proxy(this.output_area.handle_clear_output, this.output_area),
     };
     var target = this.element.find('.dv_select option:selected').attr('value');
     if (target === 'all') {
         target = '"all"';
     }
     var code = '%(widget_var)s.execute("""'+this.get_text()+'""",targets='+target+')';
     var msg_id = this.kernel.execute(code, callbacks, {silent: false});
     this.clear_input();
     this.code_mirror.focus();
 };
 
 
 DirectViewWidget.prototype._handle_execute_reply = function (content) {
     this.element.removeClass("running");
     // this.dirty = true;
 }
 
 // Basic cell manipulation.
 
 
 DirectViewWidget.prototype.select_all = function () {
     var start = {line: 0, ch: 0};
     var nlines = this.code_mirror.lineCount();
     var last_line = this.code_mirror.getLine(nlines-1);
     var end = {line: nlines-1, ch: last_line.length};
     this.code_mirror.setSelection(start, end);
 };
 
 
 DirectViewWidget.prototype.clear_input = function () {
     this.code_mirror.setValue('');
 };
 
 
 DirectViewWidget.prototype.get_text = function () {
     return this.code_mirror.getValue();
 };
 
 
 DirectViewWidget.prototype.set_text = function (code) {
     return this.code_mirror.setValue(code);
 };
 
 container.show();
 var widget = $('<div/>')
 // When templating over a JSON string, we must use single quotes.
 var targets = '%(targets)s';
 targets = $.parseJSON(targets);
 var eiw = new DirectViewWidget(widget, IPython.notebook.kernel, targets);
 element.append(widget);
 element.css('padding',0);
 setTimeout(function () {
     eiw.code_mirror.refresh();
     eiw.code_mirror.focus();
 }, 1);