update indexes to use .rst, remove .txt refs

docs/Makefile

@@ -1,138 +1,137 b''
 # Makefile for Sphinx documentation
 #
 
 # You can set these variables from the command line.
 SPHINXOPTS    =
 SPHINXBUILD   = sphinx-build
 PAPER         =
 SRCDIR        = source
 BUILDDIR      = build
 
 # Internal variables.
 PAPEROPT_a4     = -D latex_paper_size=a4
 PAPEROPT_letter = -D latex_paper_size=letter
 ALLSPHINXOPTS   = -d build/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) $(SRCDIR)
 
 .PHONY: help clean html web pickle htmlhelp latex changes linkcheck api
 
 default: html
 
 help:
 	@echo "Please use \`make <target>' where <target> is one of"
 	@echo "  html      to make standalone HTML files"
 	@echo "  pickle    to make pickle files (usable by e.g. sphinx-web)"
 	@echo "  htmlhelp  to make HTML files and a HTML help project"
 	@echo "  latex     to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
 	@echo "  texinfo   to make Texinfo files"
 	@echo "  info      to make Texinfo files and run them through makeinfo"
 	@echo "  changes   to make an overview over all changed/added/deprecated items"
 	@echo "  linkcheck to check all external links for integrity"
 	@echo
 	@echo "Compound utility targets:"
 	@echo "pdf          latex and then runs the PDF generation"
 	@echo "all          html and pdf"
 	@echo "dist         all, and then puts the results in dist/"
 	@echo "gitwash-update update git workflow from source repo"
 
 clean:
 	-rm -rf build/* dist/* $(SRCDIR)/api/generated
 
 pdf: latex
 	cd build/latex && make all-pdf
 
 all: html pdf
 
 # For final distribution, only build HTML (our pdf is now so large as to be
 # unusable, takes forever to build and just bloats the downloads).  We leave
 # them hardlinked at the top-level so users find them easily, though the
 # original build/html dir is left in-place (useful to reload builds while
 # testing).
 dist: html
 	rm -rf html
 	cp -al build/html .
 	@echo "Build finished.  Final docs are in html/"
 
 html: api
 	mkdir -p build/html build/doctrees
 	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) build/html
 	@echo
 	@echo "Build finished. The HTML pages are in build/html."
 
-api: source/api/generated/gen.txt
+api: source/api/generated/gen.rst
 
-source/api/generated/gen.txt:
+source/api/generated/gen.rst:
 	python autogen_api.py
 	@echo "Build API docs finished."
 
 pickle:
 	mkdir -p build/pickle build/doctrees
 	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) build/pickle
 	@echo
 	@echo "Build finished; now you can process the pickle files or run"
 	@echo "  sphinx-web build/pickle"
 	@echo "to start the sphinx-web server."
 
 web: pickle
 
 htmlhelp:
 	mkdir -p build/htmlhelp build/doctrees
 	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) build/htmlhelp
 	@echo
 	@echo "Build finished; now you can run HTML Help Workshop with the" \
 	      ".hhp project file in build/htmlhelp."
 
 qthelp:
 	mkdir -p build/qthelp
 	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) build/qthelp
 	@echo
 	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
 	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
 	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/IPython.qhcp"
 	@echo "To view the help file:"
 	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/IPython.qhc"
 
 latex: api
 	mkdir -p build/latex build/doctrees
 	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) build/latex
 	@echo
 	@echo "Build finished; the LaTeX files are in build/latex."
 	@echo "Run \`make all-pdf' or \`make all-ps' in that directory to" \
 	      "run these through (pdf)latex."
 
 changes:
 	mkdir -p build/changes build/doctrees
 	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) build/changes
 	@echo
 	@echo "The overview file is in build/changes."
 
 linkcheck:
 	mkdir -p build/linkcheck build/doctrees
 	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) build/linkcheck
 	@echo
 	@echo "Link check complete; look for any errors in the above output " \
-	      "or in build/linkcheck/output.txt."
+	      "or in build/linkcheck/output.rst."
 
 gitwash-update:
 	python ../tools/gitwash_dumper.py source/development ipython
-	cd source/development/gitwash && rename 's/.rst/.txt/' *.rst
 
 nightly: dist
 	rsync -avH --delete dist/ ipython:www/doc/nightly
 
 gh-pages: clean html
 	python gh-pages.py
 
 texinfo:
 	mkdir -p $(BUILDDIR)/texinfo
 	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
 	@echo
 	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
 	@echo "Run \`make' in that directory to run these through makeinfo" \
 	      "(use \`make info' here to do that automatically)."
 
 info:
 	mkdir -p $(BUILDDIR)/texinfo
 	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
 	@echo "Running Texinfo files through makeinfo..."
 	make -C $(BUILDDIR)/texinfo info
 	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."

docs/autogen_api.py

@@ -1,66 +1,66 b''
 #!/usr/bin/env python
 """Script to auto-generate our API docs.
 """
 # stdlib imports
 import os
 import sys
 
 # local imports
 sys.path.append(os.path.abspath('sphinxext'))
 from apigen import ApiDocWriter
 
 #*****************************************************************************
 if __name__ == '__main__':
     pjoin = os.path.join
     package = 'IPython'
     outdir = pjoin('source','api','generated')
-    docwriter = ApiDocWriter(package,rst_extension='.txt')
+    docwriter = ApiDocWriter(package,rst_extension='.rst')
     # You have to escape the . here because . is a special char for regexps.
     # You must do make clean if you change this!
     docwriter.package_skip_patterns += [r'\.fixes$',
                                         r'\.external$',
                                         r'\.extensions',
                                         r'\.kernel\.config',
                                         r'\.attic',
                                         r'\.quarantine',
                                         r'\.deathrow',
                                         r'\.config\.default',
                                         r'\.config\.profile',
                                         r'\.frontend',
                                         r'\.gui',
                                         r'\.kernel',
                                         # For now, the zmq code has
                                         # unconditional top-level code so it's
                                         # not import safe.  This needs fixing
                                         r'\.zmq',
                                         ]
 
     docwriter.module_skip_patterns += [ r'\.core\.fakemodule',
                                         r'\.testing\.iptest',
                                         # Keeping these disabled is OK
                                         r'\.parallel\.controller\.mongodb',
                                         r'\.lib\.inputhookwx',
                                         r'\.lib\.inputhookgtk',
                                         r'\.cocoa',
                                         r'\.ipdoctest',
                                         r'\.Gnuplot',
                                         r'\.frontend\.process\.winprocess',
                                         r'\.frontend',
                                         r'\.Shell',
                                         ]
     
     # If we don't have pexpect, we can't load irunner, so skip any code that
     # depends on it
     try:
         import pexpect
     except ImportError:
         docwriter.module_skip_patterns += [r'\.lib\.irunner',
                                            r'\.testing\.mkdoctests']
     # Now, generate the outputs
     docwriter.write_api_docs(outdir)
     # Write index with .rst extension - we can include it, but Sphinx won't try
     # to compile it
     docwriter.write_index(outdir, 'gen.rst',
                           relative_to = pjoin('source','api')
                           )
     print ('%d files written' % len(docwriter.written_modules))

docs/make.cmd

@@ -1,71 +1,71 b''
 @ECHO OFF
 REM ~ Windows command line make file for Sphinx documentation
 
 SETLOCAL
 
 SET SPHINXOPTS=
 SET SPHINXBUILD=sphinx-build
 SET PAPER=
 SET SRCDIR=source
 
 IF "%PAPER%" == "" SET PAPER=a4
 SET ALLSPHINXOPTS=-d build\doctrees -D latex_paper_size=%PAPER% %SPHINXOPTS% %SRCDIR%
 
 FOR %%X IN (%SPHINXBUILD%.exe) DO SET P=%%~$PATH:X
 
 FOR %%L IN (html pickle htmlhelp latex changes linkcheck) DO (
     IF "%1" == "%%L" (
         IF "%P%" == "" (
             ECHO.
             ECHO Error: Sphinx is not available. Please make sure it is correctly installed.
             GOTO END
         )
         MD build\doctrees 2>NUL
         MD build\%1 || GOTO DIR_EXIST
         %SPHINXBUILD% -b %1 %ALLSPHINXOPTS% build\%1
         IF NOT ERRORLEVEL 0 GOTO ERROR
         ECHO.
         ECHO Build finished. Results are in build\%1.
         IF "%1" == "pickle" (
             ECHO Now you can process the pickle files or run
             ECHO    sphinx-web build\pickle to start the sphinx-web server.
         )
         IF "%1" == "htmlhelp" (
             ECHO Now you can run HTML Help Workshop with the
             ECHO    .hhp project file in build/htmlhelp.
         )
         IF "%1" == "linkcheck" (
             ECHO Look for any errors in the above output
-            ECHO    or in build\linkcheck\output.txt.
+            ECHO    or in build\linkcheck\output.rst.
         )
         GOTO END
     )
 )
 
 IF "%1" == "clean" (
     RD /s /q build dist %SRCDIR%\api\generated 2>NUL
     IF ERRORLEVEL 0 ECHO Build environment cleaned!
     GOTO END
 )
 
 ECHO.
 ECHO Please use "make [target]" where [target] is one of:
 ECHO.
 ECHO    html      to make standalone HTML files
 ECHO    pickle    to make pickle files (usable by e.g. sphinx-web)
 ECHO    htmlhelp  to make HTML files and a HTML help project
 ECHO    latex     to make LaTeX files, you can set PAPER=a4 or PAPER=letter
 ECHO    changes   to make an overview over all changed/added/deprecated items
 ECHO    linkcheck to check all external links for integrity
 GOTO END
 
 :DIR_EXIST
 ECHO.
 ECHO Info: Run "make clean" to clean build environment
 
 :ERROR
 ECHO.
 ECHO Error: Build process failed!
 
 :END
 ENDLOCAL
  No newline at end of file

docs/source/conf.py

@@ -1,228 +1,228 b''
 # -*- coding: utf-8 -*-
 #
 # IPython documentation build configuration file.
 
 # NOTE: This file has been edited manually from the auto-generated one from
 # sphinx.  Do NOT delete and re-generate.  If any changes from sphinx are
 # needed, generate a scratch one and merge by hand any new fields needed.
 
 #
 # This file is execfile()d with the current directory set to its containing dir.
 #
 # The contents of this file are pickled, so don't put values in the namespace
 # that aren't pickleable (module imports are okay, they're removed automatically).
 #
 # All configuration values have a default value; values that are commented out
 # serve to show the default value.
 
 import sys, os
 
 ON_RTD = os.environ.get('READTHEDOCS', None) == 'True'
 
 if ON_RTD:
     # Mock the presence of matplotlib, which we don't have on RTD
     # see
     # http://read-the-docs.readthedocs.org/en/latest/faq.html
     tags.add('rtd')
     
 # If your extensions are in another directory, add it here. If the directory
 # is relative to the documentation root, use os.path.abspath to make it
 # absolute, like shown here.
 sys.path.insert(0, os.path.abspath('../sphinxext'))
 
 # Import support for ipython console session syntax highlighting
 # (lives IPython's sphinxext subpackage)
 from IPython.sphinxext import ipython_console_highlighting
 
 # We load the ipython release info into a dict by explicit execution
 iprelease = {}
 execfile('../../IPython/core/release.py',iprelease)
 
 # General configuration
 # ---------------------
 
 # Add any Sphinx extension module names here, as strings. They can be extensions
 # coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
 extensions = [
     'matplotlib.sphinxext.mathmpl',
     'matplotlib.sphinxext.only_directives',
     'matplotlib.sphinxext.plot_directive',
     'sphinx.ext.autodoc',
     'sphinx.ext.doctest',
     'sphinx.ext.inheritance_diagram',
     'IPython.sphinxext.ipython_console_highlighting',
     'IPython.sphinxext.ipython_directive',
     'numpydoc',  # to preprocess docstrings
     'github',  # for easy GitHub links
 ]
 
 if ON_RTD:
     # Remove extensions not currently supported on RTD
     extensions.remove('matplotlib.sphinxext.only_directives')
     extensions.remove('matplotlib.sphinxext.mathmpl')
     extensions.remove('matplotlib.sphinxext.plot_directive')
     extensions.remove('IPython.sphinxext.ipython_directive')
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 
 # The suffix of source filenames.
-source_suffix = '.txt'
+source_suffix = '.rst'
 
 # The master toctree document.
 master_doc = 'index'
 
 # General substitutions.
 project = 'IPython'
 copyright = '2008, The IPython Development Team'
 
 # ghissue config
 github_project_url = "https://github.com/ipython/ipython"
 
 # The default replacements for |version| and |release|, also used in various
 # other places throughout the built documents.
 #
 # The full version, including alpha/beta/rc tags.
 release = iprelease['version']
 # The short X.Y version.
 version = '.'.join(release.split('.',2)[:2])
 
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
 #today = ''
 # Else, today_fmt is used as the format for a strftime call.
 today_fmt = '%B %d, %Y'
 
 # List of documents that shouldn't be included in the build.
 #unused_docs = []
 
 # List of directories, relative to source directories, that shouldn't be searched
 # for source files.
 exclude_dirs = ['attic']
 
 # If true, '()' will be appended to :func: etc. cross-reference text.
 #add_function_parentheses = True
 
 # If true, the current module name will be prepended to all description
 # unit titles (such as .. function::).
 #add_module_names = True
 
 # If true, sectionauthor and moduleauthor directives will be shown in the
 # output. They are ignored by default.
 #show_authors = False
 
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = 'sphinx'
 
 
 # Options for HTML output
 # -----------------------
 
 # The style sheet to use for HTML and HTML Help pages. A file of that name
 # must exist either in Sphinx' static/ path, or in one of the custom paths
 # given in html_static_path.
 html_style = 'default.css'
 
 # The name for this set of Sphinx documents.  If None, it defaults to
 # "<project> v<release> documentation".
 #html_title = None
 
 # The name of an image file (within the static path) to place at the top of
 # the sidebar.
 #html_logo = None
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
 html_static_path = ['_static']
 
 # If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
 # using the given strftime format.
 html_last_updated_fmt = '%b %d, %Y'
 
 # If true, SmartyPants will be used to convert quotes and dashes to
 # typographically correct entities.
 #html_use_smartypants = True
 
 # Custom sidebar templates, maps document names to template names.
 #html_sidebars = {}
 
 # Additional templates that should be rendered to pages, maps page names to
 # template names.
 #html_additional_pages = {}
 
 # If false, no module index is generated.
 #html_use_modindex = True
 
 # If true, the reST sources are included in the HTML build as _sources/<name>.
 #html_copy_source = True
 
 # If true, an OpenSearch description file will be output, and all pages will
 # contain a <link> tag referring to it.  The value of this option must be the
 # base URL from which the finished HTML is served.
 #html_use_opensearch = ''
 
 # If nonempty, this is the file name suffix for HTML files (e.g. ".xhtml").
 #html_file_suffix = ''
 
 # Output file base name for HTML help builder.
 htmlhelp_basename = 'ipythondoc'
 
 
 # Options for LaTeX output
 # ------------------------
 
 # The paper size ('letter' or 'a4').
 latex_paper_size = 'letter'
 
 # The font size ('10pt', '11pt' or '12pt').
 latex_font_size = '11pt'
 
 # Grouping the document tree into LaTeX files. List of tuples
 # (source start file, target name, title, author, document class [howto/manual]).
 
 latex_documents = [
     ('index', 'ipython.tex', 'IPython Documentation',
      ur"""The IPython Development Team""", 'manual', True),
     ('parallel/winhpc_index', 'winhpc_whitepaper.tex',
      'Using IPython on Windows HPC Server 2008',
      ur"Brian E. Granger", 'manual', True)
 ]
 
 # The name of an image file (relative to this directory) to place at the top of
 # the title page.
 #latex_logo = None
 
 # For "manual" documents, if this is true, then toplevel headings are parts,
 # not chapters.
 #latex_use_parts = False
 
 # Additional stuff for the LaTeX preamble.
 #latex_preamble = ''
 
 # Documents to append as an appendix to all manuals.
 #latex_appendices = []
 
 # If false, no module index is generated.
 latex_use_modindex = True
 
 
 # Options for texinfo output
 # --------------------------
 
 texinfo_documents = [
   (master_doc, 'ipython', 'IPython Documentation',
    'The IPython Development Team',
    'IPython',
    'IPython Documentation',
    'Programming',
    1),
 ]
 
 
 # Cleanup
 # -------
 # delete release info to avoid pickling errors from sphinx
 
 del iprelease

docs/source/config/index.rst

@@ -1,16 +1,16 b''
 .. _config_index:
 
 ===============================
 Configuration and customization
 ===============================
 
 .. toctree::
    :maxdepth: 2
 
-   overview.txt
-   extensions/index.txt
-   ipython.txt
-   integrating.txt
-   editors.txt
-   inputtransforms.txt
-   old.txt
+   overview
+   extensions/index
+   ipython
+   integrating
+   editors
+   inputtransforms
+   old

docs/source/development/index.rst

@@ -1,26 +1,26 b''
 .. _developer_guide:
 
 =========================
 IPython developer's guide
 =========================
 
 This are two categories of developer focused documentation:
 
 1. Documentation for developers of *IPython itself*.
 2. Documentation for developers of third party tools and libraries
    that use IPython.
 
 This part of our documentation only contains information in the second category.
 
 Developers interested in working on IPython itself should consult
 our `developer information <https://github.com/ipython/ipython/wiki/Dev:-Index>`_ 
 on the IPython GitHub wiki.
 
 .. toctree::
    :maxdepth: 1
 
  
-   gitwash/index.txt
-   messaging.txt
-   parallel_messages.txt
-   parallel_connections.txt
+   gitwash/index
+   messaging
+   parallel_messages
+   parallel_connections

docs/source/development/messaging.rst

@@ -1,1061 +1,1061 b''
 .. _messaging:
 
 ======================
  Messaging in IPython
 ======================
 
 
 Introduction
 ============
 
 This document explains the basic communications design and messaging
 specification for how the various IPython objects interact over a network
 transport.  The current implementation uses the ZeroMQ_ library for messaging
 within and between hosts.
 
 .. Note::
 
    This document should be considered the authoritative description of the
    IPython messaging protocol, and all developers are strongly encouraged to
    keep it updated as the implementation evolves, so that we have a single
    common reference for all protocol details.
    
 The basic design is explained in the following diagram:
 
 .. image:: figs/frontend-kernel.png
    :width: 450px
    :alt: IPython kernel/frontend messaging architecture.
    :align: center
    :target: ../_images/frontend-kernel.png
 
 A single kernel can be simultaneously connected to one or more frontends.  The
 kernel has three sockets that serve the following functions:
 
 1. stdin: this ROUTER socket is connected to all frontends, and it allows
    the kernel to request input from the active frontend when :func:`raw_input` is called.
    The frontend that executed the code has a DEALER socket that acts as a 'virtual keyboard'
    for the kernel while this communication is happening (illustrated in the
    figure by the black outline around the central keyboard).  In practice,
    frontends may display such kernel requests using a special input widget or
    otherwise indicating that the user is to type input for the kernel instead
    of normal commands in the frontend.
 
 2. Shell: this single ROUTER socket allows multiple incoming connections from
    frontends, and this is the socket where requests for code execution, object
    information, prompts, etc. are made to the kernel by any frontend.  The
    communication on this socket is a sequence of request/reply actions from
    each frontend and the kernel.
 
 3. IOPub: this socket is the 'broadcast channel' where the kernel publishes all
    side effects (stdout, stderr, etc.) as well as the requests coming from any
    client over the shell socket and its own requests on the stdin socket.  There
    are a number of actions in Python which generate side effects: :func:`print`
    writes to ``sys.stdout``, errors generate tracebacks, etc.  Additionally, in
    a multi-client scenario, we want all frontends to be able to know what each
    other has sent to the kernel (this can be useful in collaborative scenarios,
    for example).  This socket allows both side effects and the information
    about communications taking place with one client over the shell channel
    to be made available to all clients in a uniform manner.
 
    All messages are tagged with enough information (details below) for clients
    to know which messages come from their own interaction with the kernel and
    which ones are from other clients, so they can display each type
    appropriately.
 
 The actual format of the messages allowed on each of these channels is
 specified below.  Messages are dicts of dicts with string keys and values that
 are reasonably representable in JSON.  Our current implementation uses JSON
 explicitly as its message format, but this shouldn't be considered a permanent
 feature.  As we've discovered that JSON has non-trivial performance issues due
 to excessive copying, we may in the future move to a pure pickle-based raw
 message format.  However, it should be possible to easily convert from the raw
 objects to JSON, since we may have non-python clients (e.g. a web frontend).
 As long as it's easy to make a JSON version of the objects that is a faithful
 representation of all the data, we can communicate with such clients.
 
 .. Note::
 
    Not all of these have yet been fully fleshed out, but the key ones are, see
    kernel and frontend files for actual implementation details.
 
 General Message Format
 ======================
 
 A message is defined by the following four-dictionary structure::
 
     {
       # The message header contains a pair of unique identifiers for the
       # originating session and the actual message id, in addition to the
       # username for the process that generated the message.  This is useful in
       # collaborative settings where multiple users may be interacting with the
       # same kernel simultaneously, so that frontends can label the various
       # messages in a meaningful way.
       'header' : {
                     'msg_id' : uuid,
                     'username' : str,
                     'session' : uuid,
                     # All recognized message type strings are listed below.
                     'msg_type' : str,
          },
 
       # In a chain of messages, the header from the parent is copied so that
       # clients can track where messages come from.
       'parent_header' : dict,
       
       # Any metadata associated with the message.
       'metadata' : dict,
       
       # The actual content of the message must be a dict, whose structure
       # depends on the message type.
       'content' : dict,
     }
 
 The Wire Protocol
 =================
 
 
 This message format exists at a high level,
 but does not describe the actual *implementation* at the wire level in zeromq.
 The canonical implementation of the message spec is our :class:`~IPython.kernel.zmq.session.Session` class.
 
 .. note::
 
     This section should only be relevant to non-Python consumers of the protocol.
     Python consumers should simply import and use IPython's own implementation of the wire protocol
     in the :class:`IPython.kernel.zmq.session.Session` object.
 
 Every message is serialized to a sequence of at least six blobs of bytes:
 
 .. sourcecode:: python
 
     [
       b'u-u-i-d',         # zmq identity(ies)
       b'<IDS|MSG>',       # delimiter
       b'baddad42',        # HMAC signature
       b'{header}',        # serialized header dict
       b'{parent_header}', # serialized parent header dict
       b'{metadata}',      # serialized metadata dict
       b'{content},        # serialized content dict
       b'blob',            # extra raw data buffer(s)
       ...
     ]
 
 The front of the message is the ZeroMQ routing prefix,
 which can be zero or more socket identities.
 This is every piece of the message prior to the delimiter key ``<IDS|MSG>``.
 In the case of IOPub, there should be just one prefix component,
 which is the topic for IOPub subscribers, e.g. ``pyout``, ``display_data``.
 
 .. note::
 
     In most cases, the IOPub topics are irrelevant and completely ignored,
     because frontends just subscribe to all topics.
     The convention used in the IPython kernel is to use the msg_type as the topic,
     and possibly extra information about the message, e.g. ``pyout`` or ``stream.stdout``
 
 After the delimiter is the `HMAC`_ signature of the message, used for authentication.
 If authentication is disabled, this should be an empty string.
 By default, the hashing function used for computing these signatures is sha256.
 
 .. _HMAC: http://en.wikipedia.org/wiki/HMAC
 
 .. note::
 
     To disable authentication and signature checking,
     set the `key` field of a connection file to an empty string.
 
 The signature is the HMAC hex digest of the concatenation of:
 
 - A shared key (typically the ``key`` field of a connection file)
 - The serialized header dict
 - The serialized parent header dict
 - The serialized metadata dict
 - The serialized content dict
 
 In Python, this is implemented via:
 
 .. sourcecode:: python
 
     # once:
     digester = HMAC(key, digestmod=hashlib.sha256)
     
     # for each message
     d = digester.copy()
     for serialized_dict in (header, parent, metadata, content):
         d.update(serialized_dict)
     signature = d.hexdigest()
 
 After the signature is the actual message, always in four frames of bytes.
 The four dictionaries that compose a message are serialized separately,
 in the order of header, parent header, metadata, and content.
 These can be serialized by any function that turns a dict into bytes.
 The default and most common serialization is JSON, but msgpack and pickle
 are common alternatives.
 
 After the serialized dicts are zero to many raw data buffers,
 which can be used by message types that support binary data (mainly apply and data_pub).
 
 
 Python functional API
 =====================
 
 As messages are dicts, they map naturally to a ``func(**kw)`` call form.  We
 should develop, at a few key points, functional forms of all the requests that
 take arguments in this manner and automatically construct the necessary dict
 for sending.
 
 In addition, the Python implementation of the message specification extends
 messages upon deserialization to the following form for convenience::
 
     {
       'header' : dict,
       # The msg's unique identifier and type are always stored in the header,
       # but the Python implementation copies them to the top level.
       'msg_id' : uuid,
       'msg_type' : str,
       'parent_header' : dict,
       'content' : dict,
       'metadata' : dict,
     }
 
 All messages sent to or received by any IPython process should have this
 extended structure.
 
 
 Messages on the shell ROUTER/DEALER sockets
 ===========================================
 
 .. _execute:
 
 Execute
 -------
 
 This message type is used by frontends to ask the kernel to execute code on
 behalf of the user, in a namespace reserved to the user's variables (and thus
 separate from the kernel's own internal code and variables).
 
 Message type: ``execute_request``::
 
     content = {
         # Source code to be executed by the kernel, one or more lines.
     'code' : str,
 
     # A boolean flag which, if True, signals the kernel to execute
     # this code as quietly as possible.  This means that the kernel
     # will compile the code with 'exec' instead of 'single' (so
     # sys.displayhook will not fire), forces store_history to be False, 
     # and will *not*:
     #   - broadcast exceptions on the PUB socket
     #   - do any logging
     #
     # The default is False.
     'silent' : bool,
 
     # A boolean flag which, if True, signals the kernel to populate history
     # The default is True if silent is False.  If silent is True, store_history
     # is forced to be False.
     'store_history' : bool,
 
     # A list of variable names from the user's namespace to be retrieved.
     # What returns is a rich representation of each variable (dict keyed by name).
     # See the display_data content for the structure of the representation data.
     'user_variables' : list,
 
     # Similarly, a dict mapping names to expressions to be evaluated in the
     # user's dict.
     'user_expressions' : dict,
 
     # Some frontends (e.g. the Notebook) do not support stdin requests. If
     # raw_input is called from code executed from such a frontend, a
     # StdinNotImplementedError will be raised.
     'allow_stdin' : True,
 
     }
 
 The ``code`` field contains a single string (possibly multiline).  The kernel
 is responsible for splitting this into one or more independent execution blocks
 and deciding whether to compile these in 'single' or 'exec' mode (see below for
 detailed execution semantics).
 
 The ``user_`` fields deserve a detailed explanation.  In the past, IPython had
 the notion of a prompt string that allowed arbitrary code to be evaluated, and
 this was put to good use by many in creating prompts that displayed system
 status, path information, and even more esoteric uses like remote instrument
 status acquired over the network.  But now that IPython has a clean separation
 between the kernel and the clients, the kernel has no prompt knowledge; prompts
 are a frontend-side feature, and it should be even possible for different
 frontends to display different prompts while interacting with the same kernel.
 
 The kernel now provides the ability to retrieve data from the user's namespace
 after the execution of the main ``code``, thanks to two fields in the
 ``execute_request`` message:
 
 - ``user_variables``: If only variables from the user's namespace are needed, a
   list of variable names can be passed and a dict with these names as keys and
   their :func:`repr()` as values will be returned.
 
 - ``user_expressions``: For more complex expressions that require function
   evaluations, a dict can be provided with string keys and arbitrary python
   expressions as values.  The return message will contain also a dict with the
   same keys and the :func:`repr()` of the evaluated expressions as value.
 
 With this information, frontends can display any status information they wish
 in the form that best suits each frontend (a status line, a popup, inline for a
 terminal, etc).
 
 .. Note::
 
    In order to obtain the current execution counter for the purposes of
    displaying input prompts, frontends simply make an execution request with an
    empty code string and ``silent=True``.
 
 Execution semantics
 ~~~~~~~~~~~~~~~~~~~
 
 When the silent flag is false, the execution of use code consists of the
 following phases (in silent mode, only the ``code`` field is executed):
 
 1. Run the ``pre_runcode_hook``.
 
 2. Execute the ``code`` field, see below for details.
 
 3. If #2 succeeds, compute ``user_variables`` and ``user_expressions`` are
    computed.  This ensures that any error in the latter don't harm the main
    code execution.
 
 4. Call any method registered with :meth:`register_post_execute`.
 
 .. warning::
 
    The API for running code before/after the main code block is likely to
    change soon.  Both the ``pre_runcode_hook`` and the
    :meth:`register_post_execute` are susceptible to modification, as we find a
    consistent model for both.
 
 To understand how the ``code`` field is executed, one must know that Python
 code can be compiled in one of three modes (controlled by the ``mode`` argument
 to the :func:`compile` builtin):
 
 *single*
   Valid for a single interactive statement (though the source can contain
   multiple lines, such as a for loop).  When compiled in this mode, the
   generated bytecode contains special instructions that trigger the calling of
   :func:`sys.displayhook` for any expression in the block that returns a value.
   This means that a single statement can actually produce multiple calls to
   :func:`sys.displayhook`, if for example it contains a loop where each
   iteration computes an unassigned expression would generate 10 calls::
 
       for i in range(10):
           i**2
 
 *exec*
   An arbitrary amount of source code, this is how modules are compiled.
   :func:`sys.displayhook` is *never* implicitly called.
 
 *eval*
   A single expression that returns a value.  :func:`sys.displayhook` is *never*
   implicitly called.
 
 
 The ``code`` field is split into individual blocks each of which is valid for
 execution in 'single' mode, and then:
 
 - If there is only a single block: it is executed in 'single' mode.
 
 - If there is more than one block:
 
   * if the last one is a single line long, run all but the last in 'exec' mode
     and the very last one in 'single' mode.  This makes it easy to type simple
     expressions at the end to see computed values.
 
   * if the last one is no more than two lines long, run all but the last in
     'exec' mode and the very last one in 'single' mode.  This makes it easy to
     type simple expressions at the end to see computed values.  - otherwise
     (last one is also multiline), run all in 'exec' mode
 
   * otherwise (last one is also multiline), run all in 'exec' mode as a single
     unit.
 
 Any error in retrieving the ``user_variables`` or evaluating the
 ``user_expressions`` will result in a simple error message in the return fields
 of the form::
 
    [ERROR] ExceptionType: Exception message
 
 The user can simply send the same variable name or expression for evaluation to
 see a regular traceback.
 
 Errors in any registered post_execute functions are also reported similarly,
 and the failing function is removed from the post_execution set so that it does
 not continue triggering failures.
 
 Upon completion of the execution request, the kernel *always* sends a reply,
 with a status code indicating what happened and additional data depending on
 the outcome.  See :ref:`below <execution_results>` for the possible return
 codes and associated data.
 
 
 Execution counter (old prompt number)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 The kernel has a single, monotonically increasing counter of all execution
 requests that are made with ``store_history=True``.  This counter is used to populate
 the ``In[n]``, ``Out[n]`` and ``_n`` variables, so clients will likely want to
 display it in some form to the user, which will typically (but not necessarily)
 be done in the prompts.  The value of this counter will be returned as the
 ``execution_count`` field of all ``execute_reply`` messages.
 
 .. _execution_results:
 
 Execution results
 ~~~~~~~~~~~~~~~~~
     
 Message type: ``execute_reply``::
 
     content = {
       # One of: 'ok' OR 'error' OR 'abort'
       'status' : str,
 
       # The global kernel counter that increases by one with each request that 
       # stores history.  This will typically be used by clients to display
       # prompt numbers to the user.  If the request did not store history, this will
       # be the current value of the counter in the kernel.
       'execution_count' : int,
     }
 
 When status is 'ok', the following extra fields are present::
 
     {
       # 'payload' will be a list of payload dicts.
       # Each execution payload is a dict with string keys that may have been
       # produced by the code being executed.  It is retrieved by the kernel at
       # the end of the execution and sent back to the front end, which can take
       # action on it as needed.  See main text for further details.
       'payload' : list(dict),
 
       # Results for the user_variables and user_expressions.
       'user_variables' : dict,
       'user_expressions' : dict,
     }
 
 .. admonition:: Execution payloads
     
    The notion of an 'execution payload' is different from a return value of a
    given set of code, which normally is just displayed on the pyout stream
    through the PUB socket.  The idea of a payload is to allow special types of
    code, typically magics, to populate a data container in the IPython kernel
    that will be shipped back to the caller via this channel.  The kernel
    has an API for this in the PayloadManager::
 
        ip.payload_manager.write_payload(payload_dict)
 
    which appends a dictionary to the list of payloads.
 
    
 When status is 'error', the following extra fields are present::
 
     {
       'ename' : str,   # Exception name, as a string
       'evalue' : str,  # Exception value, as a string
 
       # The traceback will contain a list of frames, represented each as a
       # string.  For now we'll stick to the existing design of ultraTB, which
       # controls exception level of detail statefully.  But eventually we'll
       # want to grow into a model where more information is collected and
       # packed into the traceback object, with clients deciding how little or
       # how much of it to unpack.  But for now, let's start with a simple list
       # of strings, since that requires only minimal changes to ultratb as
       # written.
       'traceback' : list,
     }
 
 
 When status is 'abort', there are for now no additional data fields.  This
 happens when the kernel was interrupted by a signal.
 
 
 Object information
 ------------------
 
 One of IPython's most used capabilities is the introspection of Python objects
 in the user's namespace, typically invoked via the ``?`` and ``??`` characters
 (which in reality are shorthands for the ``%pinfo`` magic).  This is used often
 enough that it warrants an explicit message type, especially because frontends
 may want to get object information in response to user keystrokes (like Tab or
 F1) besides from the user explicitly typing code like ``x??``.
 
 Message type: ``object_info_request``::
 
     content = {
         # The (possibly dotted) name of the object to be searched in all
         # relevant namespaces
         'oname' : str,
 
         # The level of detail desired.  The default (0) is equivalent to typing
         # 'x?' at the prompt, 1 is equivalent to 'x??'.
         'detail_level' : int,
     }
 
 The returned information will be a dictionary with keys very similar to the
 field names that IPython prints at the terminal.
     
 Message type: ``object_info_reply``::
 
     content = {
     # The name the object was requested under
     'name' : str,
     
     # Boolean flag indicating whether the named object was found or not.  If
     # it's false, all other fields will be empty.
     'found' : bool,
     
     # Flags for magics and system aliases
     'ismagic' : bool,
     'isalias' : bool,
 
     # The name of the namespace where the object was found ('builtin',
     # 'magics', 'alias', 'interactive', etc.)
     'namespace' : str,
 
     # The type name will be type.__name__ for normal Python objects, but it
     # can also be a string like 'Magic function' or 'System alias'
     'type_name' : str,
 
     # The string form of the object, possibly truncated for length if 
     # detail_level is 0
     'string_form' : str,
 
     # For objects with a __class__ attribute this will be set
     'base_class' : str,
 
     # For objects with a __len__ attribute this will be set
     'length' : int,
 
     # If the object is a function, class or method whose file we can find,
     # we give its full path
     'file' : str,
 
     # For pure Python callable objects, we can reconstruct the object
     # definition line which provides its call signature.  For convenience this
     # is returned as a single 'definition' field, but below the raw parts that
     # compose it are also returned as the argspec field.
     'definition' : str,
 
     # The individual parts that together form the definition string.  Clients
     # with rich display capabilities may use this to provide a richer and more
     # precise representation of the definition line (e.g. by highlighting
     # arguments based on the user's cursor position).  For non-callable
     # objects, this field is empty.
     'argspec' : { # The names of all the arguments
                   args : list,
         # The name of the varargs (*args), if any
                       varargs : str,
         # The name of the varkw (**kw), if any
         varkw : str,
         # The values (as strings) of all default arguments.  Note
         # that these must be matched *in reverse* with the 'args'
         # list above, since the first positional args have no default
         # value at all.
         defaults : list,
     },
 
     # For instances, provide the constructor signature (the definition of
     # the __init__ method):
     'init_definition' : str,
     
     # Docstrings: for any object (function, method, module, package) with a
     # docstring, we show it.  But in addition, we may provide additional
     # docstrings.  For example, for instances we will show the constructor
     # and class docstrings as well, if available.
     'docstring' : str,
 
     # For instances, provide the constructor and class docstrings
     'init_docstring' : str,
     'class_docstring' : str,
     
     # If it's a callable object whose call method has a separate docstring and
     # definition line:
     'call_def' : str,
     'call_docstring' : str,
     
     # If detail_level was 1, we also try to find the source code that
     # defines the object, if possible.  The string 'None' will indicate
     # that no source was found.
     'source' : str,
     }
 
     
 Complete
 --------
 
 Message type: ``complete_request``::
 
     content = {
         # The text to be completed, such as 'a.is'
         # this may be an empty string if the frontend does not do any lexing,
         # in which case the kernel must figure out the completion
         # based on 'line' and 'cursor_pos'.
         'text' : str,
 
         # The full line, such as 'print a.is'.  This allows completers to
         # make decisions that may require information about more than just the
         # current word.
         'line' : str,
 
         # The entire block of text where the line is.  This may be useful in the
         # case of multiline completions where more context may be needed.  Note: if
         # in practice this field proves unnecessary, remove it to lighten the
         # messages.
     
         'block' : str or null/None,
 
         # The position of the cursor where the user hit 'TAB' on the line.
         'cursor_pos' : int,
     }
 
 Message type: ``complete_reply``::
 
     content = {
     # The list of all matches to the completion request, such as
     # ['a.isalnum', 'a.isalpha'] for the above example.
     'matches' : list,
     
     # the substring of the matched text
     # this is typically the common prefix of the matches,
     # and the text that is already in the block that would be replaced by the full completion.
     # This would be 'a.is' in the above example.
     'text' : str,
     
     # status should be 'ok' unless an exception was raised during the request,
     # in which case it should be 'error', along with the usual error message content
     # in other messages.
     'status' : 'ok'
     }
 
     
 History
 -------
 
 For clients to explicitly request history from a kernel.  The kernel has all
 the actual execution history stored in a single location, so clients can
 request it from the kernel when needed.
 
 Message type: ``history_request``::
 
     content = {
     
       # If True, also return output history in the resulting dict.
       'output' : bool,
 
       # If True, return the raw input history, else the transformed input.
       'raw' : bool,
 
       # So far, this can be 'range', 'tail' or 'search'.
       'hist_access_type' : str,
       
       # If hist_access_type is 'range', get a range of input cells. session can
       # be a positive session number, or a negative number to count back from
       # the current session.
       'session' : int,
       # start and stop are line numbers within that session.
       'start' : int,
       'stop' : int,
       
       # If hist_access_type is 'tail' or 'search', get the last n cells.
       'n' : int,
       
       # If hist_access_type is 'search', get cells matching the specified glob
       # pattern (with * and ? as wildcards).
       'pattern' : str,
 
       # If hist_access_type is 'search' and unique is true, do not
       # include duplicated history.  Default is false.
       'unique' : bool,
       
     }
 
 .. versionadded:: 4.0
    The key ``unique`` for ``history_request``.
 
 Message type: ``history_reply``::
 
     content = {
       # A list of 3 tuples, either:
       # (session, line_number, input) or
       # (session, line_number, (input, output)),
       # depending on whether output was False or True, respectively.
       'history' : list,
     }
 
 
 Connect
 -------
 
 When a client connects to the request/reply socket of the kernel, it can issue
 a connect request to get basic information about the kernel, such as the ports
 the other ZeroMQ sockets are listening on. This allows clients to only have
 to know about a single port (the shell channel) to connect to a kernel.
 
 Message type: ``connect_request``::
 
     content = {
     }
 
 Message type: ``connect_reply``::
 
     content = {
         'shell_port' : int,   # The port the shell ROUTER socket is listening on.
         'iopub_port' : int,   # The port the PUB socket is listening on.
         'stdin_port' : int,   # The port the stdin ROUTER socket is listening on.
         'hb_port' : int,      # The port the heartbeat socket is listening on.
     }
 
 
 Kernel info
 -----------
 
 If a client needs to know information about the kernel, it can
 make a request of the kernel's information.
 This message can be used to fetch core information of the
 kernel, including language (e.g., Python), language version number and
 IPython version number, and the IPython message spec version number.
 
 Message type: ``kernel_info_request``::
 
     content = {
     }
 
 Message type: ``kernel_info_reply``::
 
     content = {
         # Version of messaging protocol (mandatory).
         # The first integer indicates major version.  It is incremented when
         # there is any backward incompatible change.
         # The second integer indicates minor version.  It is incremented when
         # there is any backward compatible change.
         'protocol_version': [int, int],
 
         # IPython version number (optional).
         # Non-python kernel backend may not have this version number.
         # The last component is an extra field, which may be 'dev' or
         # 'rc1' in development version.  It is an empty string for
         # released version.
         'ipython_version': [int, int, int, str],
 
         # Language version number (mandatory).
         # It is Python version number (e.g., [2, 7, 3]) for the kernel
         # included in IPython.
         'language_version': [int, ...],
 
         # Programming language in which kernel is implemented (mandatory).
         # Kernel included in IPython returns 'python'.
         'language': str,
     }
 
 
 Kernel shutdown
 ---------------
 
 The clients can request the kernel to shut itself down; this is used in
 multiple cases:
 
 - when the user chooses to close the client application via a menu or window
   control.
 - when the user types 'exit' or 'quit' (or their uppercase magic equivalents).
 - when the user chooses a GUI method (like the 'Ctrl-C' shortcut in the
   IPythonQt client) to force a kernel restart to get a clean kernel without
   losing client-side state like history or inlined figures.
 
 The client sends a shutdown request to the kernel, and once it receives the
 reply message (which is otherwise empty), it can assume that the kernel has
 completed shutdown safely.
 
 Upon their own shutdown, client applications will typically execute a last
 minute sanity check and forcefully terminate any kernel that is still alive, to
 avoid leaving stray processes in the user's machine.
 
 Message type: ``shutdown_request``::
 
     content = {
         'restart' : bool # whether the shutdown is final, or precedes a restart
     }
 
 Message type: ``shutdown_reply``::
 
     content = {
         'restart' : bool # whether the shutdown is final, or precedes a restart
     }
 
 .. Note::
 
    When the clients detect a dead kernel thanks to inactivity on the heartbeat
    socket, they simply send a forceful process termination signal, since a dead
    process is unlikely to respond in any useful way to messages.
     
 
 Messages on the PUB/SUB socket
 ==============================
 
 Streams (stdout,  stderr, etc)
 ------------------------------
 
 Message type: ``stream``::
 
     content = {
         # The name of the stream is one of 'stdout', 'stderr'
         'name' : str,
     
         # The data is an arbitrary string to be written to that stream
         'data' : str,
     }
 
 Display Data
 ------------
 
 This type of message is used to bring back data that should be diplayed (text,
 html, svg, etc.) in the frontends. This data is published to all frontends.
 Each message can have multiple representations of the data; it is up to the
 frontend to decide which to use and how. A single message should contain all
 possible representations of the same information. Each representation should
 be a JSON'able data structure, and should be a valid MIME type.
 
 Some questions remain about this design:
 
 * Do we use this message type for pyout/displayhook? Probably not, because
   the displayhook also has to handle the Out prompt display. On the other hand
   we could put that information into the metadata secion.
 
 Message type: ``display_data``::
 
     content = {
 
         # Who create the data
         'source' : str,
 
         # The data dict contains key/value pairs, where the kids are MIME
         # types and the values are the raw data of the representation in that
         # format.
         'data' : dict,
 
         # Any metadata that describes the data
         'metadata' : dict
     }
 
 
 The ``metadata`` contains any metadata that describes the output.
 Global keys are assumed to apply to the output as a whole.
 The ``metadata`` dict can also contain mime-type keys, which will be sub-dictionaries,
 which are interpreted as applying only to output of that type.
 Third parties should put any data they write into a single dict
 with a reasonably unique name to avoid conflicts.
 
 The only metadata keys currently defined in IPython are the width and height
 of images::
 
     'metadata' : {
       'image/png' : {
         'width': 640,
         'height': 480
       }
     }
 
 
 Raw Data Publication
 --------------------
 
 ``display_data`` lets you publish *representations* of data, such as images and html.
 This ``data_pub`` message lets you publish *actual raw data*, sent via message buffers.
 
 data_pub messages are constructed via the :func:`IPython.lib.datapub.publish_data` function:
 
 .. sourcecode:: python
 
     from IPython.kernel.zmq.datapub import publish_data
     ns = dict(x=my_array)
     publish_data(ns)
 
 
 Message type: ``data_pub``::
 
     content = {
         # the keys of the data dict, after it has been unserialized
         keys = ['a', 'b']
     }
     # the namespace dict will be serialized in the message buffers,
     # which will have a length of at least one
     buffers = ['pdict', ...]
 
 
 The interpretation of a sequence of data_pub messages for a given parent request should be
 to update a single namespace with subsequent results.
 
 .. note::
 
     No frontends directly handle data_pub messages at this time.
     It is currently only used by the client/engines in :mod:`IPython.parallel`,
     where engines may publish *data* to the Client,
     of which the Client can then publish *representations* via ``display_data``
     to various frontends.
 
 Python inputs
 -------------
 
 These messages are the re-broadcast of the ``execute_request``.
 
 Message type: ``pyin``::
 
     content = {
         'code' : str,  # Source code to be executed, one or more lines
 
         # The counter for this execution is also provided so that clients can
         # display it, since IPython automatically creates variables called _iN
         # (for input prompt In[N]).
         'execution_count' : int
     }
 
 Python outputs
 --------------
 
 When Python produces output from code that has been compiled in with the
 'single' flag to :func:`compile`, any expression that produces a value (such as
 ``1+1``) is passed to ``sys.displayhook``, which is a callable that can do with
 this value whatever it wants.  The default behavior of ``sys.displayhook`` in
 the Python interactive prompt is to print to ``sys.stdout`` the :func:`repr` of
 the value as long as it is not ``None`` (which isn't printed at all).  In our
 case, the kernel instantiates as ``sys.displayhook`` an object which has
 similar behavior, but which instead of printing to stdout, broadcasts these
 values as ``pyout`` messages for clients to display appropriately.
 
 IPython's displayhook can handle multiple simultaneous formats depending on its
 configuration. The default pretty-printed repr text is always given with the
 ``data`` entry in this message. Any other formats are provided in the
 ``extra_formats`` list. Frontends are free to display any or all of these
 according to its capabilities. ``extra_formats`` list contains 3-tuples of an ID
 string, a type string, and the data. The ID is unique to the formatter
 implementation that created the data. Frontends will typically ignore the ID
 unless if it has requested a particular formatter. The type string tells the
 frontend how to interpret the data. It is often, but not always a MIME type.
 Frontends should ignore types that it does not understand. The data itself is
 any JSON object and depends on the format. It is often, but not always a string.
 
 Message type: ``pyout``::
 
     content = {
 
         # The counter for this execution is also provided so that clients can
         # display it, since IPython automatically creates variables called _N
         # (for prompt N).
         'execution_count' : int,
         
         # The data dict contains key/value pairs, where the kids are MIME
         # types and the values are the raw data of the representation in that
         # format. The data dict must minimally contain the ``text/plain``
         # MIME type which is used as a backup representation.
         'data' : dict,
 
     }
     
 Python errors
 -------------
 
 When an error occurs during code execution
 
 Message type: ``pyerr``::
 
     content = {
        # Similar content to the execute_reply messages for the 'error' case,
        # except the 'status' field is omitted.
     }
 
 Kernel status
 -------------
 
 This message type is used by frontends to monitor the status of the kernel.
 
 Message type: ``status``::
 
     content = {
         # When the kernel starts to execute code, it will enter the 'busy'
         # state and when it finishes, it will enter the 'idle' state.
         # The kernel will publish state 'starting' exactly once at process startup.
         execution_state : ('busy', 'idle', 'starting')
     }
 
 
 Messages on the stdin ROUTER/DEALER sockets
 ===========================================
 
 This is a socket where the request/reply pattern goes in the opposite direction:
 from the kernel to a *single* frontend, and its purpose is to allow
 ``raw_input`` and similar operations that read from ``sys.stdin`` on the kernel
 to be fulfilled by the client. The request should be made to the frontend that
 made the execution request that prompted ``raw_input`` to be called. For now we
 will keep these messages as simple as possible, since they only mean to convey
 the ``raw_input(prompt)`` call.
 
 Message type: ``input_request``::
 
     content = { 'prompt' : str }
 
 Message type: ``input_reply``::
 
     content = { 'value' : str }
     
 .. Note::
 
    We do not explicitly try to forward the raw ``sys.stdin`` object, because in
    practice the kernel should behave like an interactive program.  When a
    program is opened on the console, the keyboard effectively takes over the
    ``stdin`` file descriptor, and it can't be used for raw reading anymore.
    Since the IPython kernel effectively behaves like a console program (albeit
    one whose "keyboard" is actually living in a separate process and
    transported over the zmq connection), raw ``stdin`` isn't expected to be
    available.
 
    
 Heartbeat for kernels
 =====================
 
 Initially we had considered using messages like those above over ZMQ for a
 kernel 'heartbeat' (a way to detect quickly and reliably whether a kernel is
 alive at all, even if it may be busy executing user code).  But this has the
 problem that if the kernel is locked inside extension code, it wouldn't execute
 the python heartbeat code.  But it turns out that we can implement a basic
 heartbeat with pure ZMQ, without using any Python messaging at all.
 
 The monitor sends out a single zmq message (right now, it is a str of the
 monitor's lifetime in seconds), and gets the same message right back, prefixed
 with the zmq identity of the DEALER socket in the heartbeat process. This can be
 a uuid, or even a full message, but there doesn't seem to be a need for packing
 up a message when the sender and receiver are the exact same Python object.
 
 The model is this::
 
     monitor.send(str(self.lifetime)) # '1.2345678910'
 
 and the monitor receives some number of messages of the form::
 
     ['uuid-abcd-dead-beef', '1.2345678910']
 
 where the first part is the zmq.IDENTITY of the heart's DEALER on the engine, and
 the rest is the message sent by the monitor.  No Python code ever has any
 access to the message between the monitor's send, and the monitor's recv.
 
 
 ToDo
 ====
 
 Missing things include:
 
 * Important: finish thinking through the payload concept and API.
 
 * Important: ensure that we have a good solution for magics like %edit.  It's
   likely that with the payload concept we can build a full solution, but not
   100% clear yet.
 
 * Finishing the details of the heartbeat protocol.
 
 * Signal handling: specify what kind of information kernel should broadcast (or
   not) when it receives signals.
 
-.. include:: ../links.rst
+.. include:: ../links.txt

docs/source/index.rst

@@ -1,38 +1,38 b''
 =====================
 IPython Documentation
 =====================
 
 .. htmlonly::
 
    :Release: |release|
    :Date: |today|
 
 .. only:: not rtd
 
     Welcome to the official IPython documentation.
 
 .. only:: rtd
 
     This is a partial copy of IPython documentation, please visit `IPython official documentation <http://ipython.org/documentation.html>`_.
 
 Contents
 ========
 
 .. toctree::
    :maxdepth: 1
 
-   overview.txt
-   whatsnew/index.txt
-   install/index.txt
-   interactive/index.txt
-   parallel/index.txt
-   config/index.txt
-   development/index.txt
-   api/index.txt
-   about/index.txt
+   overview
+   whatsnew/index
+   install/index
+   interactive/index
+   parallel/index
+   config/index
+   development/index
+   api/index
+   about/index
 
 .. htmlonly::
    * :ref:`genindex`
    * :ref:`modindex`
    * :ref:`search`
 

docs/source/install/index.rst

@@ -1,11 +1,11 b''
 .. _install_index:
 
 ============
 Installation
 ============
 
 .. toctree::
    :maxdepth: 2
 
-   install.txt
+   install
 

docs/source/interactive/index.rst

@@ -1,15 +1,15 b''
 ==================================
 Using IPython for interactive work
 ==================================
 
 .. toctree::
    :maxdepth: 2
 
-   tutorial.txt
-   tips.txt
-   reference.txt
-   shell.txt
-   qtconsole.txt
-   htmlnotebook.txt
+   tutorial
+   tips
+   reference
+   shell
+   qtconsole
+   htmlnotebook
 
 

docs/source/parallel/index.rst

@@ -1,25 +1,25 b''
 .. _parallel_index:
 
 ====================================
 Using IPython for parallel computing
 ====================================
 
 .. toctree::
    :maxdepth: 2
 
-   parallel_intro.txt
-   parallel_process.txt
-   parallel_multiengine.txt
-   magics.txt
-   parallel_task.txt
-   asyncresult.txt
-   parallel_mpi.txt
-   parallel_db.txt
-   parallel_security.txt
-   parallel_winhpc.txt
-   parallel_demos.txt
-   dag_dependencies.txt
-   parallel_details.txt
-   parallel_transition.txt
+   parallel_intro
+   parallel_process
+   parallel_multiengine
+   magics
+   parallel_task
+   asyncresult
+   parallel_mpi
+   parallel_db
+   parallel_security
+   parallel_winhpc
+   parallel_demos
+   dag_dependencies
+   parallel_details
+   parallel_transition
 
 

docs/source/parallel/winhpc_index.rst

@@ -1,14 +1,14 b''
 ========================================
 Using IPython on Windows HPC Server 2008
 ========================================
 
 
 Contents
 ========
 
 .. toctree::
    :maxdepth: 1
 
-   parallel_winhpc.txt
-   parallel_demos.txt
+   parallel_winhpc
+   parallel_demos