Lots of documentation work.

examples/Builtin Extensions/Index.ipynb

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+     "cell_type": "markdown",
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+      "<img src=\"../images/ipython_logo.png\">"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 1,
+     "metadata": {},
+     "source": [
+      "Builtin Extensions"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Tutorials"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "* [Cython Magics](Cython Magics.ipynb): magics for compiling and running Cython code in a cell\n",
+      "* [Octave Magic](Octave Magic.ipynb): magics for running Octave code in a cell\n",
+      "* [R Magics](R Magics.ipynb): magics for running R code in a cell"
+     ]
+    }
+   ],
+   "metadata": {}
+  }
+ ]
+}
  No newline at end of file

examples/Core/Index.ipynb

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+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+  {
+   "cells": [
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "<img src=\"../images/ipython_logo.png\">"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 1,
+     "metadata": {},
+     "source": [
+      "Core Syntax and Command Line Features"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Tutorials"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "* [Cell Magics](Cell Magics.ipynb)\n",
+      "* [Script Magics](Script Magics.ipynb)"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Examples"
+     ]
+    }
+   ],
+   "metadata": {}
+  }
+ ]
+}
  No newline at end of file

examples/Customization/Index.ipynb

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+ "worksheets": []
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  No newline at end of file

examples/Embedding/Index.ipynb

@@ -0,0 +1,9 b''
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examples/Index.ipynb

@@ -0,0 +1,59 b''
+{
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+  "name": "",
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+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+  {
+   "cells": [
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "<img src=\"images/ipython_logo.png\">"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 1,
+     "metadata": {},
+     "source": [
+      "IPython Documentation"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "This directory contains IPython's notebook-based documentation. This augments our [Sphinx-based documentation](http://ipython.org/ipython-doc/stable/index.html) with notebooks that contain interactive tutorials and examples. Over time, more of our documentation will be pulled into this format."
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Topics"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "* [Core](Core/Index.ipynb): IPython's core syntax and command line features available in all of our frontends\n",
+      "* [Notebook](Notebook/Index.ipynb): The IPython Notebook frontend\n",
+      "* [Widgets](Widgets/Index.ipynb): Interactive JavaScript/HTML widgets and `interact`\n",
+      "* [Parallel](Parallel/Index.ipynb): IPython's library for interactive parallel computing\n",
+      "* [Customization](Customization/Index.ipynb): How to configure IPython and customize it with magics, extensions, etc.\n",
+      "* [Embedding](Embedding/Index.ipynb): Embedding and reusing IPython's components into other applications\n",
+      "* [Builtin Extensions](Builtin Extensions/Index.ipynb): Extensions we ship with IPython\n",
+      "* [Misc](Misc/Index.ipynb): Content that doesn't fit anywhere else"
+     ]
+    }
+   ],
+   "metadata": {}
+  }
+ ]
+}
  No newline at end of file

examples/Misc/Index.ipynb

@@ -0,0 +1,9 b''
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+ "nbformat_minor": 0,
+ "worksheets": []
+}
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examples/Notebook/Index.ipynb

@@ -0,0 +1,73 b''
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+  "name": "",
+  "signature": "sha256:ef5ecdf40e119cd6da50579d4d594dc74cb8c063a74b3f3f8f76834b783f750e"
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+  {
+   "cells": [
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "<img src=\"../images/ipython_logo.png\">"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 1,
+     "metadata": {},
+     "source": [
+      "IPython Notebook"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Tutorials"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "* [User Interface](User Interface.ipynb)\n",
+      "* [Running Code](Running Code.ipynb)\n",
+      "* [Basic Output](Basic Output.ipynb)\n",
+      "* [Plotting with Matplotlib](Plotting with Matplotlib.ipynb)\n",
+      "* [Markdown Cells](Markdown Cells.ipynb)\n",
+      "* [Typesetting Math Using MathJax](Typesetting Math Using MathJax.ipynb)\n",
+      "* [Display System](Display System.ipynb)\n",
+      "* [Custom Display Logic](Custom Display Logic.ipynb)"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Examples"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "* [Trapezoid Rule](Trapezoid Rule.ipynb)\n",
+      "* [SymPy](SymPy.ipynb)\n",
+      "* [Raw Input](Raw Input.ipynb)\n",
+      "* [Progress Bars](Progress Bars.ipynb)\n",
+      "* [Importing Notebooks](Importing Notebooks.ipynb)\n",
+      "* [Connecting with the Qt Console](Connecting with the Qt Console.ipynb)\n",
+      "* [Animations Using clear_output](Animations Using clear_output.ipynb)"
+     ]
+    }
+   ],
+   "metadata": {}
+  }
+ ]
+}
  No newline at end of file

examples/Parallel/Index.ipynb

@@ -1,7 +1,7 b''
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   "name": "",
-  "signature": "sha256:a2f4e040950648308ac7ec5f95d83948b4499ffc68e6bfd8f6fe8784955f52fb"
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  "nbformat_minor": 0,
@@ -9,18 +9,18 b''
   {
    "cells": [
     {
-     "cell_type": "heading",
-     "level": 1,
+     "cell_type": "markdown",
      "metadata": {},
      "source": [
-      "Widget Tutorials"
+      "<img src=\"../images/ipython_logo.png\">"
      ]
     },
     {
-     "cell_type": "markdown",
+     "cell_type": "heading",
+     "level": 1,
      "metadata": {},
      "source": [
-      "This directory includes a tutorials related to the IPython notebook widget framework."
+      "Parallel Computing with IPython"
      ]
     },
     {
@@ -28,14 +28,14 b''
      "level": 2,
      "metadata": {},
      "source": [
-      "Interact"
+      "Tutorials"
      ]
     },
     {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
-      "* [Using Interact](Using Interact.ipynb)"
+      "* [Data Publication API](Data Publication API.ipynb) "
      ]
     },
     {
@@ -43,19 +43,14 b''
      "level": 2,
      "metadata": {},
      "source": [
-      "Widgets"
+      "Examples"
      ]
     },
     {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
-      "- [Basics](Basics.ipynb)  \n",
-      "- [Events](Events.ipynb)  \n",
-      "- [Placement](Placement.ipynb)  \n",
-      "- [Styles](Styles.ipynb)  \n",
-      "- [Alignment](Alignment.ipynb)  \n",
-      "- [Custom Widgets](Custom Widgets.ipynb)  "
+      "*  "
      ]
     }
    ],

examples/Parallel/Parallel Decorator and map.ipynb

@@ -1,6 +1,7 b''
 {
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+  "signature": "sha256:8781781d8835d77bf0f71b535b72ee2718405543c48e87ad0408242119cdb3cc"
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  "nbformat": 3,
  "nbformat_minor": 0,
@@ -52,14 +53,7 b''
        "output_type": "stream",
        "stream": "stdout",
        "text": [
-        "Simple, default map:  "
-       ]
-      },
-      {
-       "output_type": "stream",
-       "stream": "stdout",
-       "text": [
-        "[0, 2, 4, 6, 8, 10, 12, 14, 16, 18]\n"
+        "Simple, default map:  [0, 2, 4, 6, 8, 10, 12, 14, 16, 18]\n"
        ]
       }
      ],
@@ -81,7 +75,7 b''
        "output_type": "stream",
        "stream": "stdout",
        "text": [
-        "Submitted tasks, got ids:  ['d482fcb3-f8e9-41ff-ba16-9fd4118324f1', 'e4fe38dd-8a4d-4f3a-a111-e4c9fdbea7c3', '580431f4-ac66-4517-b03e-a58aa690a87b', '19a012cf-5d9d-4cf3-9656-d56263958c0e', '012ebbb5-5def-47ad-a247-20f88d2c8980', '0dea6cdb-5b22-4bac-a1bb-7544c0ef44e6', '909d073f-7eee-42a7-8f3b-8f7aa32e7639', 'be6c7466-d541-47a0-b12d-bc408d40ad77', 'b97b5967-a5a3-45c5-95cc-44e0823fd646', '69b06902-9526-42d9-bda6-c943be19cc5a']\n",
+        "Submitted tasks, got ids:  ['b4d86123-967a-4f21-b9c5-8a77a69a3ced', '97401998-891d-4729-8288-ae1b97c28235', '1586cf7e-32c7-4864-bd0e-6aab16e07a3f', 'f6770223-59c3-4344-a69a-5d555d1dfb7f', '0ebb71da-6e16-44ac-917a-be978fd3787d', '582443c5-937e-45b0-9f13-5607c53cba60', '8d453d87-d70d-4fbd-a2c4-994ab3a8b6c7', '0a680757-1a59-4826-969c-523a45f3d76f', '63a3e983-a205-4f07-b494-ec86b2cdd004', '79b34cbb-aa93-4d11-8746-28969dbdd3ec']\n",
         "Using a mapper:  [0, 2, 4, 6, 8, 10, 12, 14, 16, 18]\n"
        ]
       }

examples/Widgets/Index.ipynb

@@ -1,7 +1,7 b''
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   "name": "",
-  "signature": "sha256:80d852710c872fd0903d077bf8002d332c0e1256e0734573233e92c67684a321"
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  "nbformat_minor": 0,
@@ -9,11 +9,39 b''
   {
    "cells": [
     {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "<img src=\"../images/ipython_logo.png\">"
+     ]
+    },
+    {
      "cell_type": "heading",
      "level": 1,
      "metadata": {},
      "source": [
-      "Widget Examples"
+      "Interactive JavaScript Widgets"
+     ]
+    },
+    {
+     "cell_type": "heading",
+     "level": 2,
+     "metadata": {},
+     "source": [
+      "Tutorials"
+     ]
+    },
+    {
+     "cell_type": "markdown",
+     "metadata": {},
+     "source": [
+      "- [Using Interact](Using Interact.ipynb)\n",
+      "- [Widgets Overview](Widgets Overview.ipynb)  \n",
+      "- [Widget Events](Widget Events.ipynb)  \n",
+      "- [Widget Placement](Widget Placement.ipynb)  \n",
+      "- [Widget Styles](Widget Styles.ipynb)  \n",
+      "- [Widget Alignment](Widget Alignment.ipynb)  \n",
+      "- [Custom Widgets](Custom Widgets.ipynb)"
      ]
     },
     {
@@ -21,7 +49,7 b''
      "level": 2,
      "metadata": {},
      "source": [
-      "Examples of how to create a custom widget:"
+      "Examples of custom widgets"
      ]
     },
     {
@@ -51,7 +79,7 b''
       "* [Factoring](Factoring.ipynb)\n",
       "* [Image Browser](Image Browser.ipynb)\n",
       "* [Image Processing](Image Processing.ipynb)\n",
-      "* [Lorenz](Lorenz.ipynb)"
+      "* [Lorenz Differential Equations](Lorenz Differential Equations.ipynb)"
      ]
     }
    ],