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Massive amount of work to improve the test suite, restores doctests....
Massive amount of work to improve the test suite, restores doctests. After Brian's comments, I realized that our test machinery was NOT in reality running all the ipython-syntax doctests we have. This is now fixed. The test suite isn't completely passing, but this commit is for the underlying machinery. I will now work on fixing as many broken tests as I can. Fixes https://bugs.launchpad.net/ipython/+bug/505071

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================================================
Development version
================================================
Main `ipython` branch
=====================
As of the 0.11 version of IPython, a signifiant portion of the core has been
refactored. This refactoring is founded on a number of new abstractions.
The main new classes that implement these abstractions are:
* :class:`IPython.utils.traitlets.HasTraitlets`.
* :class:`IPython.core.component.Component`.
* :class:`IPython.core.application.Application`.
* :class:`IPython.config.loader.ConfigLoader`.
* :class:`IPython.config.loader.Config`
We are still in the process of writing developer focused documentation about
these classes, but for now our :ref:`configuration documentation
<config_overview>` contains a high level overview of the concepts that these
classes express.
The changes listed here are a brief summary of the recent work on IPython.
For more details, please consult the actual source.
New features
------------
* The :mod:`IPython.extensions.pretty` extension has been moved out of
quarantine and fully updated to the new extension API.
* New magics for loading/unloading/reloading extensions have been added:
``%load_ext``, ``%unload_ext`` and ``%reload_ext``.
* The configuration system and configuration files are brand new. See the
configuration system :ref:`documentation <config_index>` for more details.
* The :class:`~IPython.core.iplib.InteractiveShell` class is now a
:class:`~IPython.core.component.Component` subclass and has traitlets that
determine the defaults and runtime environment. The ``__init__`` method has
also been refactored so this class can be instantiated and run without the
old :mod:`ipmaker` module.
* The methods of :class:`~IPython.core.iplib.InteractiveShell` have
been organized into sections to make it easier to turn more sections
of functionality into componenets.
* The embedded shell has been refactored into a truly standalone subclass of
:class:`InteractiveShell` called :class:`InteractiveShellEmbed`. All
embedding logic has been taken out of the base class and put into the
embedded subclass.
* I have created methods of :class:`~IPython.core.iplib.InteractiveShell` to
help it cleanup after itself. The :meth:`cleanup` method controls this. We
couldn't do this in :meth:`__del__` because we have cycles in our object
graph that prevent it from being called.
* Created a new module :mod:`IPython.utils.importstring` for resolving
strings like ``foo.bar.Bar`` to the actual class.
* Completely refactored the :mod:`IPython.core.prefilter` module into
:class:`~IPython.core.component.Component` subclasses. Added a new layer
into the prefilter system, called "transformations" that all new prefilter
logic should use (rather than the older "checker/handler" approach).
* Aliases are now components (:mod:`IPython.core.alias`).
* We are now using an internally shipped version of
:mod:`~IPython.external.argparse` to parse command line options for
:command:`ipython`.
* New top level :func:`~IPython.core.embed.embed` function that can be called
to embed IPython at any place in user's code. One the first call it will
create an :class:`~IPython.core.embed.InteractiveShellEmbed` instance and
call it. In later calls, it just calls the previously created
:class:`~IPython.core.embed.InteractiveShellEmbed`.
* Created a component system (:mod:`IPython.core.component`) that is based on
:mod:`IPython.utils.traitlets`. Components are arranged into a runtime
containment tree (not inheritance) that i) automatically propagates
configuration information and ii) allows components to discover each other
in a loosely coupled manner. In the future all parts of IPython will be
subclasses of :class:`~IPython.core.component.Component`. All IPython
developers should become familiar with the component system.
* Created a new :class:`~IPython.config.loader.Config` for holding
configuration information. This is a dict like class with a few extras: i)
it supports attribute style access, ii) it has a merge function that merges
two :class:`~IPython.config.loader.Config` instances recursively and iii) it
will automatically create sub-:class:`~IPython.config.loader.Config`
instances for attributes that start with an uppercase character.
* Created new configuration loaders in :mod:`IPython.config.loader`. These
loaders provide a unified loading interface for all configuration
information including command line arguments and configuration files. We
have two default implementations based on :mod:`argparse` and plain python
files. These are used to implement the new configuration system.
* Created a top-level :class:`Application` class in
:mod:`IPython.core.application` that is designed to encapsulate the starting
of any IPython process. An application loads and merges all the
configuration objects, constructs the main application :class:`Component`
instances and then starts the application running. The default
:class:`Application` class has built-in logic for handling the IPython
directory as well as profiles.
* The :class:`Type` and :class:`Instance` traitlets now handle classes given
as strings, like ``foo.bar.Bar``. This is needed for forward declarations.
But, this was implemented in a careful way so that string to class
resolution is done at a single point, when the parent
:class:`~IPython.utils.traitlets.HasTraitlets` is instantiated.
* :mod:`IPython.utils.ipstruct` has been refactored to be a subclass of
dict. It also now has full docstrings and doctests.
* Created a Trait's like implementation in :mod:`IPython.utils.traitlets`.
This is a pure Python, lightweight version of a library that is similar to
:mod:`enthought.traits`. We are using this for validation, defaults and
notification in our new component system. Although it is not API compatible
with :mod:`enthought.traits`, we plan on moving in this direction so that
eventually our implementation could be replaced by a (yet to exist) pure
Python version of :mod:`enthought.traits`.
* Added a new module :mod:`IPython.lib.inputhook` to manage the integration
with GUI event loops using `PyOS_InputHook`. See the docstrings in this
module or the main IPython docs for details.
* For users, GUI event loop integration is now handled through the new
:command:`%gui` magic command. Type ``%gui?`` at an IPython prompt for
documentation.
* The command line options ``-wthread``, ``-qthread`` and
``-gthread`` just call the appropriate :mod:`IPython.lib.inputhook`
functions.
* For developers :mod:`IPython.lib.inputhook` provides a simple interface
for managing the event loops in their interactive GUI applications.
Examples can be found in our :file:`docs/examples/lib` directory.
Bug fixes
---------
* Previously, the latex Sphinx docs were in a single chapter. This has been
fixed by adding a sixth argument of True to the ``latex_documents``
attribute of :file:`conf.py`.
* The ``psum`` example in the MPI documentation has been updated to mpi4py
version 1.1.0. Thanks to J. Thomas for this fix.
* The top-level, zero-install :file:`ipython.py` script has been updated to
the new application launching API.
* Keyboard interrupts now work with GUI support enabled across all platforms
and all GUI toolkits reliably.
Backwards incompatible changes
------------------------------
* The extension loading functions have been renamed to
:func:`load_ipython_extension` and :func:`unload_ipython_extension`.
* :class:`~IPython.core.iplib.InteractiveShell` no longer takes an
``embedded`` argument. Instead just use the
:class:`~IPython.core.iplib.InteractiveShellEmbed` class.
* ``__IPYTHON__`` is no longer injected into ``__builtin__``.
* :meth:`Struct.__init__` no longer takes `None` as its first argument. It
must be a :class:`dict` or :class:`Struct`.
* :meth:`~IPython.core.iplib.InteractiveShell.ipmagic` has been renamed
:meth:`~IPython.core.iplib.InteractiveShell.magic.`
* The functions :func:`ipmagic` and :func:`ipalias` have been removed from
:mod:`__builtins__`.
* The references to the global :class:`~IPython.core.iplib.InteractiveShell`
instance (``_ip``, and ``__IP``) have been removed from the user's
namespace. They are replaced by a new function called :func:`get_ipython`
that returns the current :class:`~IPython.core.iplib.InteractiveShell`
instance. This function is injected into the user's namespace and is now the
main way of accessing IPython's API.
* Old style configuration files :file:`ipythonrc` and :file:`ipy_user_conf.py`
are no longer supported. Users should migrate there configuration files to
the new format described :ref:`here <config_overview>` and :ref:`here
<configuring_ipython>`.
* The old IPython extension API that relied on :func:`ipapi` has been
completely removed. The new extension API is described :ref:`here
<configuring_ipython>`.
* Support for ``qt3`` has been dropped. User's who need this should use
previous versions of IPython.
* Removed :mod:`shellglobals` as it was obsolete.
* Removed all the threaded shells in :mod:`IPython.core.shell`. These are no
longer needed because of the new capabilities in
:mod:`IPython.lib.inputhook`.
* The ``-pylab`` command line flag has been disabled until matplotlib adds
support for the new :mod:`IPython.lib.inputhook` approach. The new stuff
does work with matplotlib, but you have to set everything up by hand.
* New top-level sub-packages have been created: :mod:`IPython.core`,
:mod:`IPython.lib`, :mod:`IPython.utils`, :mod:`IPython.deathrow`,
:mod:`IPython.quarantine`. All existing top-level modules have been
moved to appropriate sub-packages. All internal import statements
have been updated and tests have been added. The build system (setup.py
and friends) have been updated. See :ref:`this section <module_reorg>` of the
documentation for descriptions of these new sub-packages.
* Compatability modules have been created for :mod:`IPython.Shell`,
:mod:`IPython.ipapi` and :mod:`IPython.iplib` that display warnings
and then load the actual implementation from :mod:`IPython.core`.
* :mod:`Extensions` has been moved to :mod:`extensions` and all existing
extensions have been moved to either :mod:`IPython.quarantine` or
:mod:`IPython.deathrow`. :mod:`IPython.quarantine` contains modules that we
plan on keeping but that need to be updated. :mod:`IPython.deathrow`
contains modules that are either dead or that should be maintained as third
party libraries. More details about this can be found :ref:`here
<module_reorg>`.
* The IPython GUIs in :mod:`IPython.frontend` and :mod:`IPython.gui` are likely
broken because of the refactoring in the core. With proper updates, these
should still work. We probably want to get these so they are not using
:mod:`IPython.kernel.core` (which is being phased out).