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/ docs / source / parallel / parallel_multiengine.txt
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r3618 ==========================
IPython's Direct interface
==========================
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r3618 The direct, or multiengine, interface represents one possible way of working with a set of
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r3586 IPython engines. The basic idea behind the multiengine interface is that the
capabilities of each engine are directly and explicitly exposed to the user.
Thus, in the multiengine interface, each engine is given an id that is used to
identify the engine and give it work to do. This interface is very intuitive
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r3664 and is designed with interactive usage in mind, and is the best place for
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r3586 new users of IPython to begin.
Starting the IPython controller and engines
===========================================
To follow along with this tutorial, you will need to start the IPython
controller and four IPython engines. The simplest way of doing this is to use
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r3672 the :command:`ipcluster` command::
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r4608 $ ipcluster start -n 4
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r3591
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r3586 For more detailed information about starting the controller and engines, see
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r4435 our :ref:`introduction <parallel_overview>` to using IPython for parallel computing.
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r5169 Creating a ``DirectView`` instance
==================================
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r3666 The first step is to import the IPython :mod:`IPython.parallel`
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r3591 module and then create a :class:`.Client` instance:
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.. sourcecode:: ipython
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r3666 In [1]: from IPython.parallel import Client
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r3666 In [2]: rc = Client()
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r3618 This form assumes that the default connection information (stored in
Bradley M. Froehle
IPYTHON_DIR -> IPYTHONDIR in comments and documentation
r6696 :file:`ipcontroller-client.json` found in :file:`IPYTHONDIR/profile_default/security`) is
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r3618 accurate. If the controller was started on a remote machine, you must copy that connection
file to the client machine, or enter its contents as arguments to the Client constructor:
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.. sourcecode:: ipython
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r3618 # If you have copied the json connector file from the controller:
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r3666 In [2]: rc = Client('/path/to/ipcontroller-client.json')
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r3663 # or to connect with a specific profile you have set up:
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r3666 In [3]: rc = Client(profile='mpi')
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r3635 To make sure there are engines connected to the controller, users can get a list
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.. sourcecode:: ipython
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r3591 In [3]: rc.ids
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r3635 Out[3]: [0, 1, 2, 3]
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Here we see that there are four engines ready to do work for us.
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r3639 For direct execution, we will make use of a :class:`DirectView` object, which can be
constructed via list-access to the client:
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r3663 .. sourcecode:: ipython
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In [4]: dview = rc[:] # use all engines
.. seealso::
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r3655 For more information, see the in-depth explanation of :ref:`Views <parallel_details>`.
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r3639
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r3586 Quick and easy parallelism
==========================
In many cases, you simply want to apply a Python function to a sequence of
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r3591 objects, but *in parallel*. The client interface provides a simple way
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r3639 of accomplishing this: using the DirectView's :meth:`~DirectView.map` method.
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Parallel map
------------
Python's builtin :func:`map` functions allows a function to be applied to a
sequence element-by-element. This type of code is typically trivial to
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r3594 parallelize. In fact, since IPython's interface is all about functions anyway,
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r3635 you can just use the builtin :func:`map` with a :class:`RemoteFunction`, or a
DirectView's :meth:`map` method:
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.. sourcecode:: ipython
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r3591 In [62]: serial_result = map(lambda x:x**10, range(32))
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r3639
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r3664 In [63]: parallel_result = dview.map_sync(lambda x: x**10, range(32))
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r3639 In [67]: serial_result==parallel_result
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r3591 Out[67]: True
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.. note::
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r3635 The :class:`DirectView`'s version of :meth:`map` does
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r3639 not do dynamic load balancing. For a load balanced version, use a
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r3664 :class:`LoadBalancedView`.
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.. seealso::
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r3639 :meth:`map` is implemented via :class:`ParallelFunction`.
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r3639 Remote function decorators
--------------------------
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r3591 Remote functions are just like normal functions, but when they are called,
they execute on one or more engines, rather than locally. IPython provides
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r3639 two decorators:
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.. sourcecode:: ipython
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r3664 In [10]: @dview.remote(block=True)
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r5169 ....: def getpid():
....: import os
....: return os.getpid()
....:
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In [11]: getpid()
Out[11]: [12345, 12346, 12347, 12348]
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r3664 The ``@parallel`` decorator creates parallel functions, that break up an element-wise
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r3639 operations and distribute them, reconstructing the result.
.. sourcecode:: ipython
In [12]: import numpy as np
In [13]: A = np.random.random((64,48))
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r3664 In [14]: @dview.parallel(block=True)
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r5169 ....: def pmul(A,B):
....: return A*B
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In [15]: C_local = A*A
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r3664 In [16]: C_remote = pmul(A,A)
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In [17]: (C_local == C_remote).all()
Out[17]: True
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r5634 Calling a ``@parallel`` function *does not* correspond to map. It is used for splitting
element-wise operations that operate on a sequence or array. For ``map`` behavior,
parallel functions do have a map method.
==================== ============================ =============================
call pfunc(seq) pfunc.map(seq)
==================== ============================ =============================
# of tasks # of engines (1 per engine) # of engines (1 per engine)
# of remote calls # of engines (1 per engine) ``len(seq)``
argument to remote ``seq[i:j]`` (sub-sequence) ``seq[i]`` (single element)
==================== ============================ =============================
A quick example to illustrate the difference in arguments for the two modes:
.. sourcecode:: ipython
In [16]: @dview.parallel(block=True)
....: def echo(x):
....: return str(x)
....:
In [17]: echo(range(5))
Out[17]: ['[0, 1]', '[2]', '[3]', '[4]']
In [18]: echo.map(range(5))
Out[18]: ['0', '1', '2', '3', '4']
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r3635 .. seealso::
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r5634 See the :func:`~.remotefunction.parallel` and :func:`~.remotefunction.remote`
decorators for options.
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r3591 Calling Python functions
========================
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The most basic type of operation that can be performed on the engines is to
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r3591 execute Python code or call Python functions. Executing Python code can be
done in blocking or non-blocking mode (non-blocking is default) using the
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r3664 :meth:`.View.execute` method, and calling functions can be done via the
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r3591 :meth:`.View.apply` method.
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r3594 apply
-----
The main method for doing remote execution (in fact, all methods that
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r3664 communicate with the engines are built on top of it), is :meth:`View.apply`.
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r3594
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r3664 We strive to provide the cleanest interface we can, so `apply` has the following
signature:
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r3664 .. sourcecode:: python
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r3664 view.apply(f, *args, **kwargs)
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r3664 There are various ways to call functions with IPython, and these flags are set as
attributes of the View. The ``DirectView`` has just two of these flags:
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r3664 dv.block : bool
whether to wait for the result, or return an :class:`AsyncResult` object
immediately
dv.track : bool
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r5167 whether to instruct pyzmq to track when zeromq is done sending the message.
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r3664 This is primarily useful for non-copying sends of numpy arrays that you plan to
edit in-place. You need to know when it becomes safe to edit the buffer
without corrupting the message.
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r5169 dv.targets : int, list of ints
which targets this view is associated with.
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r3664 Creating a view is simple: index-access on a client creates a :class:`.DirectView`.
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.. sourcecode:: ipython
In [4]: view = rc[1:3]
Out[4]: <DirectView [1, 2]>
In [5]: view.apply<tab>
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r3670 view.apply view.apply_async view.apply_sync
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r3664 For convenience, you can set block temporarily for a single call with the extra sync/async methods.
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r3586 Blocking execution
------------------
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r3591 In blocking mode, the :class:`.DirectView` object (called ``dview`` in
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r3586 these examples) submits the command to the controller, which places the
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r3591 command in the engines' queues for execution. The :meth:`apply` call then
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r3586 blocks until the engines are done executing the command:
.. sourcecode:: ipython
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r3639 In [2]: dview = rc[:] # A DirectView of all engines
In [3]: dview.block=True
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r3591 In [4]: dview['a'] = 5
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r3591 In [5]: dview['b'] = 10
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r3664 In [6]: dview.apply(lambda x: a+b+x, 27)
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r3655 Out[6]: [42, 42, 42, 42]
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r3664 You can also select blocking execution on a call-by-call basis with the :meth:`apply_sync`
method:
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r3664 In [7]: dview.block=False
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r3664 In [8]: dview.apply_sync(lambda x: a+b+x, 27)
Out[8]: [42, 42, 42, 42]
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r3664 Python commands can be executed as strings on specific engines by using a View's ``execute``
method:
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r3664 .. sourcecode:: ipython
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r3664 In [6]: rc[::2].execute('c=a+b')
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r3664 In [7]: rc[1::2].execute('c=a-b')
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r3670 In [8]: dview['c'] # shorthand for dview.pull('c', block=True)
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r3664 Out[8]: [15, -5, 15, -5]
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Non-blocking execution
----------------------
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then returns a :class:`AsyncResult` object immediately. The
:class:`AsyncResult` object gives you a way of getting a result at a later
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r3639 time through its :meth:`get` method.
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r6472 .. seealso::
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r6472 Docs on the :ref:`AsyncResult <parallel_asyncresult>` object.
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r3591
This allows you to quickly submit long running commands without blocking your
local Python/IPython session:
.. sourcecode:: ipython
# define our function
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r3624 In [6]: def wait(t):
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r5169 ....: import time
....: tic = time.time()
....: time.sleep(t)
....: return time.time()-tic
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# In non-blocking mode
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r3639 In [7]: ar = dview.apply_async(wait, 2)
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# Now block for the result
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r3639 In [8]: ar.get()
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r3591 Out[8]: [2.0006198883056641, 1.9997570514678955, 1.9996809959411621, 2.0003249645233154]
# Again in non-blocking mode
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r3639 In [9]: ar = dview.apply_async(wait, 10)
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# Poll to see if the result is ready
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r3639 In [10]: ar.ready()
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r3591 Out[10]: False
# ask for the result, but wait a maximum of 1 second:
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r3639 In [45]: ar.get(1)
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r3591 ---------------------------------------------------------------------------
TimeoutError Traceback (most recent call last)
/home/you/<ipython-input-45-7cd858bbb8e0> in <module>()
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r3639 ----> 1 ar.get(1)
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r3666 /path/to/site-packages/IPython/parallel/asyncresult.pyc in get(self, timeout)
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r3591 62 raise self._exception
63 else:
---> 64 raise error.TimeoutError("Result not ready.")
65
66 def ready(self):
TimeoutError: Result not ready.
.. Note::
Note the import inside the function. This is a common model, to ensure
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r3664 that the appropriate modules are imported where the task is run. You can
also manually import modules into the engine(s) namespace(s) via
:meth:`view.execute('import numpy')`.
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r3591
Often, it is desirable to wait until a set of :class:`AsyncResult` objects
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r3664 are done. For this, there is a the method :meth:`wait`. This method takes a
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r3639 tuple of :class:`AsyncResult` objects (or `msg_ids` or indices to the client's History),
and blocks until all of the associated results are ready:
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.. sourcecode:: ipython
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r3664 In [72]: dview.block=False
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r3591 # A trivial list of AsyncResults objects
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r3635 In [73]: pr_list = [dview.apply_async(wait, 3) for i in range(10)]
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r3591 # Wait until all of them are done
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r3664 In [74]: dview.wait(pr_list)
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r3624 # Then, their results are ready using get() or the `.r` attribute
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r3591 In [75]: pr_list[0].get()
Out[75]: [2.9982571601867676, 2.9982588291168213, 2.9987530708312988, 2.9990990161895752]
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r3666 The ``block`` and ``targets`` keyword arguments and attributes
--------------------------------------------------------------
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r5169 Most DirectView methods (excluding :meth:`apply`) accept ``block`` and
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r3666 ``targets`` as keyword arguments. As we have seen above, these keyword arguments control the
blocking mode and which engines the command is applied to. The :class:`View` class also has
:attr:`block` and :attr:`targets` attributes that control the default behavior when the keyword
arguments are not provided. Thus the following logic is used for :attr:`block` and :attr:`targets`:
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* If no keyword argument is provided, the instance attributes are used.
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r7072 * The Keyword arguments, if provided overrides the instance attributes for
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r3635 the duration of a single call.
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r3639
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r3586 The following examples demonstrate how to use the instance attributes:
.. sourcecode:: ipython
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r3666 In [16]: dview.targets = [0,2]
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r3664 In [17]: dview.block = False
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r3664 In [18]: ar = dview.apply(lambda : 10)
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r3635 In [19]: ar.get()
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r3666 Out[19]: [10, 10]
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r7073 In [20]: dview.targets = v.client.ids # all engines (4)
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r3664 In [21]: dview.block = True
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r3664 In [22]: dview.apply(lambda : 42)
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r3635 Out[22]: [42, 42, 42, 42]
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r3664 The :attr:`block` and :attr:`targets` instance attributes of the
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r3635 :class:`.DirectView` also determine the behavior of the parallel magic commands.
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r7057 .. seealso::
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r7479 See the documentation of the :ref:`Parallel Magics <parallel_magics>`.
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r3586 Moving Python objects around
============================
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r3591 In addition to calling functions and executing code on engines, you can
transfer Python objects to and from your IPython session and the engines. In
IPython, these operations are called :meth:`push` (sending an object to the
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Basic push and pull
-------------------
Here are some examples of how you use :meth:`push` and :meth:`pull`:
.. sourcecode:: ipython
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r3664 In [38]: dview.push(dict(a=1.03234,b=3453))
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r3597 Out[38]: [None,None,None,None]
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r3664 In [39]: dview.pull('a')
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r3597 Out[39]: [ 1.03234, 1.03234, 1.03234, 1.03234]
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r3670 In [40]: dview.pull('b', targets=0)
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r3591 Out[40]: 3453
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r3664 In [41]: dview.pull(('a','b'))
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r3597 Out[41]: [ [1.03234, 3453], [1.03234, 3453], [1.03234, 3453], [1.03234, 3453] ]
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there is no empty Out in the scatter/gather example bit.
r7074 In [42]: dview.push(dict(c='speed'))
Out[42]: [None,None,None,None]
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In non-blocking mode :meth:`push` and :meth:`pull` also return
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.. sourcecode:: ipython
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r3664 In [48]: ar = dview.pull('a', block=False)
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r3639 In [49]: ar.get()
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r3591 Out[49]: [1.03234, 1.03234, 1.03234, 1.03234]
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Dictionary interface
--------------------
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:meth:`update` for convenience. This make the remote namespaces of the engines
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r3642 appear as a local dictionary. Underneath, these methods call :meth:`apply`:
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.. sourcecode:: ipython
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r3635 In [51]: dview['a']=['foo','bar']
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r3635 In [52]: dview['a']
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r3597 Out[52]: [ ['foo', 'bar'], ['foo', 'bar'], ['foo', 'bar'], ['foo', 'bar'] ]
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Scatter and gather
------------------
Sometimes it is useful to partition a sequence and push the partitions to
different engines. In MPI language, this is know as scatter/gather and we
follow that terminology. However, it is important to remember that in
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r3586 interactive IPython session to the engines and :meth:`gather` is from the
engines back to the interactive IPython session. For scatter/gather operations
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r5169 between engines, MPI, pyzmq, or some other direct interconnect should be used.
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.. sourcecode:: ipython
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r3635 In [58]: dview.scatter('a',range(16))
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r3597 Out[58]: [None,None,None,None]
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r3635 In [59]: dview['a']
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r3597 Out[59]: [ [0, 1, 2, 3], [4, 5, 6, 7], [8, 9, 10, 11], [12, 13, 14, 15] ]
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r3635 In [60]: dview.gather('a')
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r3591 Out[60]: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
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Other things to look at
=======================
How to do parallel list comprehensions
--------------------------------------
In many cases list comprehensions are nicer than using the map function. While
we don't have fully parallel list comprehensions, it is simple to get the
basic effect using :meth:`scatter` and :meth:`gather`:
.. sourcecode:: ipython
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r3635 In [66]: dview.scatter('x',range(64))
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r3664 In [67]: %px y = [i**10 for i in x]
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r3600 Parallel execution on engines: [0, 1, 2, 3]
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r3635 In [68]: y = dview.gather('y')
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r3591 In [69]: print y
[0, 1, 1024, 59049, 1048576, 9765625, 60466176, 282475249, 1073741824,...]
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r3670 Remote imports
--------------
Sometimes you will want to import packages both in your interactive session
and on your remote engines. This can be done with the :class:`ContextManager`
created by a DirectView's :meth:`sync_imports` method:
.. sourcecode:: ipython
In [69]: with dview.sync_imports():
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r5169 ....: import numpy
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r3670 importing numpy on engine(s)
Any imports made inside the block will also be performed on the view's engines.
sync_imports also takes a `local` boolean flag that defaults to True, which specifies
whether the local imports should also be performed. However, support for `local=False`
has not been implemented, so only packages that can be imported locally will work
this way.
You can also specify imports via the ``@require`` decorator. This is a decorator
designed for use in Dependencies, but can be used to handle remote imports as well.
Modules or module names passed to ``@require`` will be imported before the decorated
function is called. If they cannot be imported, the decorated function will never
timo
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r7108 execute and will fail with an UnmetDependencyError. Failures of single Engines will
be collected and raise a CompositeError, as demonstrated in the next section.
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.. sourcecode:: ipython
In [69]: from IPython.parallel import require
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r4271 In [70]: @require('re'):
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r5169 ....: def findall(pat, x):
....: # re is guaranteed to be available
....: return re.findall(pat, x)
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# you can also pass modules themselves, that you already have locally:
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r4271 In [71]: @require(time):
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r5169 ....: def wait(t):
....: time.sleep(t)
....: return t
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r3670
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r7478 .. note::
:func:`sync_imports` does not allow ``import foo as bar`` syntax,
because the assignment represented by the ``as bar`` part is not
available to the import hook.
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r4109 .. _parallel_exceptions:
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r3670
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r3586 Parallel exceptions
-------------------
In the multiengine interface, parallel commands can raise Python exceptions,
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r7470 just like serial commands. But it is a little subtle, because a single
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r3586 :exc:`CompositeError` exception class that will be raised in most cases. The
:exc:`CompositeError` class is a special type of exception that wraps one or
more other types of exceptions. Here is how it works:
.. sourcecode:: ipython
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r7470 In [78]: dview.block = True
In [79]: dview.execute("1/0")
[0:execute]:
---------------------------------------------------------------------------
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r9724 ZeroDivisionError Traceback (most recent call last)
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r7470 ----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[1:execute]:
---------------------------------------------------------------------------
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r9724 ZeroDivisionError Traceback (most recent call last)
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r7470 ----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
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r7470 [2:execute]:
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r3591 ---------------------------------------------------------------------------
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r7470 ----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
[3:execute]:
---------------------------------------------------------------------------
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r7470 ----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
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Notice how the error message printed when :exc:`CompositeError` is raised has
information about the individual exceptions that were raised on each engine.
If you want, you can even raise one of these original exceptions:
.. sourcecode:: ipython
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r3591 In [80]: try:
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r7470 ....: dview.execute('1/0', block=True)
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r4109 ....: except parallel.error.CompositeError, e:
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r3591 ....: e.raise_exception()
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r7470 ....:
....:
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r3591 ---------------------------------------------------------------------------
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r9724 ZeroDivisionError Traceback (most recent call last)
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r7470 ----> 1 1/0
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If you are working in IPython, you can simple type ``%debug`` after one of
these :exc:`CompositeError` exceptions is raised, and inspect the exception
instance:
.. sourcecode:: ipython
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r3664 In [81]: dview.execute('1/0')
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r7470 [0:execute]:
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r3591 ---------------------------------------------------------------------------
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r9724 ZeroDivisionError Traceback (most recent call last)
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r7470 ----> 1 1/0
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r3591 ZeroDivisionError: integer division or modulo by zero
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r7470 [1:execute]:
---------------------------------------------------------------------------
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r7470 ----> 1 1/0
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r3591 ZeroDivisionError: integer division or modulo by zero
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r7470 [2:execute]:
---------------------------------------------------------------------------
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r7470 ----> 1 1/0
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r3591 ZeroDivisionError: integer division or modulo by zero
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r7470 [3:execute]:
---------------------------------------------------------------------------
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r7470 ----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
In [82]: %debug
> /.../site-packages/IPython/parallel/client/asyncresult.py(125)get()
124 else:
--> 125 raise self._exception
126 else:
# Here, self._exception is the CompositeError instance:
ipdb> e = self._exception
ipdb> e
CompositeError(4)
# we can tab-complete on e to see available methods:
ipdb> e.<TAB>
e.args e.message e.traceback
e.elist e.msg
e.ename e.print_traceback
e.engine_info e.raise_exception
e.evalue e.render_traceback
# We can then display the individual tracebacks, if we want:
ipdb> e.print_traceback(1)
[1:execute]:
---------------------------------------------------------------------------
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r7470 ----> 1 1/0
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r3664
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r9724 Since you might have 100 engines, you probably don't want to see 100 tracebacks
for a simple NameError because of a typo.
For this reason, CompositeError truncates the list of exceptions it will print
to :attr:`CompositeError.tb_limit` (default is five).
You can change this limit to suit your needs with:
.. sourcecode:: ipython
In [20]: from IPython.parallel import CompositeError
In [21]: CompositeError.tb_limit = 1
In [22]: %px a=b
[0:execute]:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
----> 1 a=b
NameError: name 'b' is not defined
... 3 more exceptions ...
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r3586 All of this same error handling magic even works in non-blocking mode:
.. sourcecode:: ipython
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r3664 In [83]: dview.block=False
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r3591
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r3664 In [84]: ar = dview.execute('1/0')
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r3591
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r3639 In [85]: ar.get()
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r7470 [0:execute]:
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r3591 ---------------------------------------------------------------------------
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r9724 ZeroDivisionError Traceback (most recent call last)
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r7470 ----> 1 1/0
ZeroDivisionError: integer division or modulo by zero
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r9724
... 3 more exceptions ...